FFCP PHASE1:Hg19::chr15:41523417..41523529,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11261 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt=F5GX29,Q99653 | |||
|association_with_transcript=0bp_to_ENST00000392151,ENST00000560397,ENST00000560784,ENST00000561280,NM_007236,uc001znl.2_5end | |||
|description=CAGE_peak_1_at_CHP_5end | |||
|id=chr15:41523417..41523529,+ | |||
|ontology_enrichment_celltype=CL:0000766!6.93e-16!76;CL:0000860!8.61e-16!45;CL:0002057!4.73e-15!42;CL:0002009!1.75e-13!65;CL:0002194!4.58e-13!63;CL:0000576!4.58e-13!63;CL:0000040!4.58e-13!63;CL:0000559!4.58e-13!63;CL:0000557!6.82e-12!71;CL:0000839!6.45e-11!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.28e-16;33!CL:0002057;8.28e-16;33!CL:0000473;5.08e-13;39!CL:0000234;5.08e-13;39!CL:0000576;1.30e-08;48!CL:0000766;2.84e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.73e-15,42;CL:0002057,4.73e-15,42;CL:0000766,5.82e-15,72;CL:0000473,6.65e-15,48;CL:0000234,6.65e-15,48;CL:0002009,1.39e-12,61;CL:0002194,3.62e-12,59;CL:0000576,3.62e-12,59;CL:0000040,3.62e-12,59;CL:0000559,3.62e-12,59;CL:0000557,5.13e-11,67;CL:0000839,4.67e-10,66 | |||
|ontology_enrichment_development_v019=CL:0002057;2.82e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005423,4.98e-17,581;UBERON:0000922,2.77e-16,592;UBERON:0002050,1.12e-15,564;UBERON:0000923,2.25e-15,560;UBERON:0010316,2.25e-15,560;UBERON:0005291,2.25e-15,560;UBERON:0006598,2.25e-15,560;UBERON:0010317,2.25e-15,560;UBERON:0002532,2.25e-15,560;UBERON:0002204,1.99e-11,167;UBERON:0004765,1.02e-09,90;UBERON:0002371,1.47e-09,76;UBERON:0001434,4.56e-09,100;UBERON:0001474,2.46e-08,82;UBERON:0000926,2.71e-08,315;UBERON:0004120,2.71e-08,315;UBERON:0006603,2.71e-08,315;UBERON:0004111,2.91e-08,240;UBERON:0003104,9.59e-08,160;UBERON:0009142,9.59e-08,160;UBERON:0003081,1.17e-07,203;UBERON:0003914,1.28e-07,117;UBERON:0002405,2.26e-07,93;UBERON:0002100,4.09e-07,199;UBERON:0005256,6.31e-07,122 | |||
|phase1_expression=89.9307977389255,238.936184662337,132.638094254309,98.0718323860678,139.898822555741,90.7232065064383,326.756842837121,166.774046584683,531.773939014871,104.682656949643,147.933847610155,125.166906230589,161.689157654042,152.232614140857,179.285980268802,120.346201214868,118.730822020723,113.92837410043,119.055602904884,116.965005172949,133.212451382497,131.337528299319,61.2545012460461,67.2053427107861,69.5506223355208,40.5755184521621,41.4607976722226,38.4108612810755,225.791094911271,156.98622382176,205.286179517117,79.9896465296667,173.494609216272,208.541261734068,15.5709073166406,41.0869081888648,38.7552579921998,152.902732754798,184.30034722506,139.972011611724,96.7314848716473,93.2813758134661,130.590812790533,242.524262284314,193.47248316867,160.590648506334,293.325444574974,214.218469659371,182.726758828111,270.143156390499,234.643207180656,158.443094025352,269.935868016772,211.718976215495,171.991637974814,281.987024634822,197.856958791938,128.092386133698,304.553472909048,218.231738411744,200.1125203751,260.912378447692,198.06741201828,179.014395223732,303.26865436687,226.954089876456,202.417230923562,253.509903244054,181.47605561023,161.154122771197,240.949002048081,226.122468496365,175.003700254809,93.7973471225022,106.939962882417,78.8316507111493,160.854599801781,160.689275340412,187.566759675493,82.9387084287033,101.845338725934,79.2762427338511,26.3994366691984,20.2071286166989,21.3482220927253,28.590924911956,22.4221752740167,25.8638597979517,17.1871666924064,16.2189138271012,18.7840279806118,38.757654498482,34.7868637593958,50.2251048600298,62.2164504909505,39.2442286314865,24.785431034343,23.1876350022007,30.6346233509269,50.9918810941568,14.0146574652444,15.6237775892462,15.5861382726329,47.2380337193136,26.8091375802102,26.3625334554509,24.1015438750864,66.6074862573511,53.0642138044303,56.4022012790609,39.5180525433763,48.9767214892239,13.1975041214234,15.7849088572931,14.6349733326968,49.9694201296267,19.544245173698,18.2122546105794,21.0006344376187,22.2995790026868,18.2303367079797,16.1576847556224,34.3311271497322,40.6997423471051,31.2326816380865,31.2545972698102,34.487375870684,34.4747530914292,33.1625842771549,25.199446275607,231.616522998264,99.2637272361382,102.417912036668,100.480084362909,128.843843033424,129.492787950976,139.175040733942,83.2145628217507,91.6042378319817,90.2438647672635,96.9696034052112,88.9347922629469,210.198381344797,164.628292596287,138.58173709055,146.268979331384,112.615392559479,55.80680608745,38.3236590222686,48.660932674173,162.786411633331,121.293077909964,131.566250109278,156.024991971027,140.532311130318,95.7410785951435,125.605974888623,116.287541626198,99.9703198149656,116.81749385487,118.431819230089,111.759999540621,119.102284083507,116.54919646964,85.0649045275848,123.948022858303,107.325040115309,105.967403134806,113.454311724754,135.744989318242,104.791397528193,337.357868636322,352.880040374976,208.889050976274,132.194539150955,97.2522329583973,45.8135765613737,37.2887606973458,97.5338051045482,118.863651230169,115.288915388081,112.233734529808,154.360673558284,107.094984295402,95.9521371276003,206.602888735331,148.65338851584,91.8540012788483,123.615390424807,98.6916251271897,140.033413677038,103.107489809226,79.965234517857,89.6076146760345,187.821837554502,92.0029036665142,185.676428772851,87.912211438872,86.5434252474949,295.802442629859,223.49024210485,79.2863096723652,113.732734563615,165.407276944057,117.646002396065,85.2036072321275,103.213546468832,57.8504134116107,33.7252515095061,83.5009390280599,79.2625310336761,33.3101116653687,105.938000057115,33.7509107459774,114.647983500259,28.1856474842915,98.2165012024882,33.8261257487113,108.434780600629,133.842935045976,39.7610743618608,95.3114849233477,72.4023729165782,133.349988682675,129.008915039465,155.161286105451,88.918831768475,71.4335451252806,79.0118811512725,82.9288440122964,98.9097735432463,71.9005397379385,65.7088035785227,97.7726226053186,113.270635509034,144.418425617945,162.422883375657,119.489868040242,111.097310761469,99.2965443119946,116.249847259943,105.235771496632,104.873613647105,123.505478274711,121.264865447464,106.57496247415,171.990220927543,131.827267375239,165.041178543891,158.769408296385,231.96171372395,126.784710951414,173.692232564333,10.5951143859516,109.828675619,82.5241167535908,243.096882180106,158.486472093244,97.6136322116936,151.845050059989,47.2422042699971,127.911978589388,54.8459099696038,107.931207031797,132.554415792243,104.521308179017,102.319798279431,103.688512967856,57.6849210510271,47.216738915218,95.5321983619102,101.32384680529,109.689797769081,89.0471422874381,149.840058353383,125.754511253997,99.4995187228645,97.3623694021773,136.86761646198,389.203957937795,112.085656498837,69.4549187061586,66.8716583854701,68.9283686508034,201.732810166221,291.839157126524,317.659281939227,287.401709318145,110.128244685259,173.898630491628,257.815442232782,147.67663808284,147.790463334482,90.4261064172314,124.876477422013,2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| |||
|short_description=p1@CHP | |||
}} |
Revision as of 23:04, 11 January 2014
Short description: | p1@CHP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CHP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000392151, ENST00000560397, ENST00000560784, ENST00000561280, NM_007236, uc001znl.2_5end |
EntrezGene: | CHP |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.73e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.73e-15 | 42 |
myeloid leukocyte | 5.82e-15 | 72 |
defensive cell | 6.65e-15 | 48 |
phagocyte | 6.65e-15 | 48 |
macrophage dendritic cell progenitor | 1.39e-12 | 61 |
monopoietic cell | 3.62e-12 | 59 |
monocyte | 3.62e-12 | 59 |
monoblast | 3.62e-12 | 59 |
promonocyte | 3.62e-12 | 59 |
granulocyte monocyte progenitor cell | 5.13e-11 | 67 |
myeloid lineage restricted progenitor cell | 4.67e-10 | 66 |
Ontology term | p-value | n |
---|---|---|
developing anatomical structure | 4.98e-17 | 581 |
embryo | 2.77e-16 | 592 |
embryonic structure | 1.12e-15 | 564 |
germ layer | 2.25e-15 | 560 |
germ layer / neural crest | 2.25e-15 | 560 |
embryonic tissue | 2.25e-15 | 560 |
presumptive structure | 2.25e-15 | 560 |
germ layer / neural crest derived structure | 2.25e-15 | 560 |
epiblast (generic) | 2.25e-15 | 560 |
musculoskeletal system | 1.99e-11 | 167 |
skeletal element | 1.02e-09 | 90 |
bone marrow | 1.47e-09 | 76 |
skeletal system | 4.56e-09 | 100 |
bone element | 2.46e-08 | 82 |
mesoderm | 2.71e-08 | 315 |
mesoderm-derived structure | 2.71e-08 | 315 |
presumptive mesoderm | 2.71e-08 | 315 |
anatomical conduit | 2.91e-08 | 240 |
mesenchyme | 9.59e-08 | 160 |
entire embryonic mesenchyme | 9.59e-08 | 160 |
lateral plate mesoderm | 1.17e-07 | 203 |
epithelial tube | 1.28e-07 | 117 |
immune system | 2.26e-07 | 93 |
trunk | 4.09e-07 | 199 |
trunk mesenchyme | 6.31e-07 | 122 |