FFCP PHASE1:Hg19::chr15:79603479..79603529,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23423 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28889 | |||
|TSSclassifier=strong | |||
|UniProt=B4DN05,F5H4M7,G3V1J9,Q9Y3Q3 | |||
|association_with_transcript=0bp_to_ENST00000424155,ENST00000536821,ENST00000543455,NM_007364,uc002beu.2,uc002bev.2,uc010unj.1_5end | |||
|description=CAGE_peak_1_at_TMED3_5end | |||
|id=chr15:79603479..79603529,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.18e-29!679;CL:0000004!2.18e-29!679;CL:0000255!2.18e-29!679;CL:0000012!2.32e-29!682;CL:0000222!5.07e-27!119;CL:0000055!3.81e-26!180;CL:0000144!1.06e-23!625;CL:0002371!2.34e-21!591;CL:0000220!2.89e-21!246;CL:0002321!4.45e-21!248;CL:0000183!2.89e-20!59;CL:0000192!6.30e-20!42;CL:0000514!6.30e-20!42;CL:0000680!7.63e-20!57;CL:0000056!7.63e-20!57;CL:0000355!7.63e-20!57;CL:0000187!1.39e-18!54;CL:0000359!6.97e-17!32;CL:0000003!2.23e-16!722;CL:0000393!7.75e-16!60;CL:0000211!7.75e-16!60;CL:0000066!1.01e-10!254;CL:0000057!8.86e-10!75;CL:0000063!1.39e-08!578;CL:0000213!3.13e-08!57;CL:0000215!3.13e-08!57;CL:0002078!7.07e-08!44;CL:0000115!8.37e-08!35;CL:0002139!3.13e-07!24;CL:0000071!3.84e-07!18;CL:0002546!3.84e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.83e-16;32!CL:0000192;4.33e-14;43!CL:0000187;3.06e-10;55!CL:0000134;1.29e-08;55!CL:0000393;8.39e-08;61!CL:0000211;8.39e-08;61!CL:0000723;1.08e-07;61!CL:0000048;2.30e-07;58!CL:0002139;3.18e-07;24!CL:0000071;3.89e-07;18!CL:0000349;4.02e-07;19!CL:0000115;6.82e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.79e-27,121;CL:0002321,2.15e-21,250;CL:0000680,1.41e-19,58;CL:0000056,1.41e-19,58;CL:0000355,1.41e-19,58;CL:0000192,1.49e-19,43;CL:0000514,1.49e-19,43;CL:0000187,2.54e-18,55;CL:0000359,6.97e-17,32;CL:0000393,1.21e-15,61;CL:0000211,1.21e-15,61;CL:0000066,9.80e-11,253;CL:0000057,4.12e-10,76;CL:0000213,1.49e-08,58;CL:0000215,1.49e-08,58;CL:0002078,3.24e-08,45;CL:0000115,3.69e-08,36;CL:0002139,3.13e-07,24;CL:0000349,3.77e-07,19;CL:0000071,3.84e-07,18;CL:0002546,3.84e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000514;4.33e-14;43!CL:0000355;3.71e-10;58!CL:0000222;2.67e-07;121!CL:0002546;3.89e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.27e-22!79;UBERON:0007798!1.27e-22!79;UBERON:0000055!1.77e-20!69;UBERON:0004872!3.17e-19!84;UBERON:0001637!5.15e-19!42;UBERON:0003509!5.15e-19!42;UBERON:0004572!5.15e-19!42;UBERON:0001981!5.49e-19!60;UBERON:0007500!5.49e-19!60;UBERON:0004537!5.49e-19!60;UBERON:0006965!5.49e-19!60;UBERON:0000486!3.55e-18!82;UBERON:0000914!3.62e-18!83;UBERON:0002329!3.62e-18!83;UBERON:0003077!3.62e-18!83;UBERON:0003059!3.62e-18!83;UBERON:0007282!3.62e-18!83;UBERON:0009618!3.62e-18!83;UBERON:0007285!3.62e-18!83;UBERON:0003914!6.03e-18!118;UBERON:0004290!8.13e-18!70;UBERON:0000490!1.89e-17!138;UBERON:0002100!4.05e-17!216;UBERON:0005256!1.18e-16!143;UBERON:0001134!1.61e-16!61;UBERON:0002036!1.61e-16!61;UBERON:0003082!1.61e-16!61;UBERON:0003104!1.87e-15!238;UBERON:0009142!1.87e-15!238;UBERON:0004573!7.49e-15!33;UBERON:0004571!7.49e-15!33;UBERON:0002385!8.67e-15!63;UBERON:0001015!8.67e-15!63;UBERON:0000383!8.67e-15!63;UBERON:0004535!1.83e-14!110;UBERON:0001009!3.80e-13!113;UBERON:0000926!2.65e-08!448;UBERON:0004120!2.65e-08!448;UBERON:0006603!2.65e-08!448;UBERON:0000947!7.74e-08!21;UBERON:0010191!7.74e-08!21;UBERON:0000475!1.66e-07!365;UBERON:0000487!2.11e-07!22;UBERON:0006914!3.05e-07!25;UBERON:0001986!3.84e-07!18;UBERON:0004638!3.84e-07!18;UBERON:0004852!3.84e-07!18;UBERON:0009569!5.28e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.40e-13;42!UBERON:0003509;1.40e-13;42!UBERON:0004572;1.40e-13;42!UBERON:0004573;1.56e-13;33!UBERON:0004571;1.56e-13;33!UBERON:0007500;6.74e-12;56!UBERON:0001981;6.74e-12;56!UBERON:0004537;6.74e-12;56!UBERON:0000055;2.50e-10;65!UBERON:0003914;2.53e-10;74!UBERON:0002049;5.94e-10;75!UBERON:0007798;5.94e-10;75!UBERON:0000947;7.37e-08;21!UBERON:0010191;7.37e-08;21!UBERON:0000487;2.13e-07;22!UBERON:0006914;3.01e-07;25!UBERON:0000025;3.47e-07;93!UBERON:0004638;3.89e-07;18!UBERON:0001986;3.89e-07;18!UBERON:0004852;3.89e-07;18!UBERON:0000490;6.00e-07;33 | |||
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| |||
|short_description=p1@TMED3 | |||
}} |
Revision as of 00:47, 12 January 2014
Short description: | p1@TMED3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMED3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000424155, ENST00000536821, ENST00000543455, NM_007364, uc002beu.2, uc002bev.2, uc010unj.1_5end |
EntrezGene: | TMED3 |
HGNC: | 28889 |
UniProt: | B4DN05F5H4M7G3V1J9Q9Y3Q3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.79e-27 | 121 |
embryonic cell | 2.15e-21 | 250 |
muscle precursor cell | 1.41e-19 | 58 |
myoblast | 1.41e-19 | 58 |
multi-potent skeletal muscle stem cell | 1.41e-19 | 58 |
smooth muscle cell | 1.49e-19 | 43 |
smooth muscle myoblast | 1.49e-19 | 43 |
muscle cell | 2.54e-18 | 55 |
vascular associated smooth muscle cell | 6.97e-17 | 32 |
electrically responsive cell | 1.21e-15 | 61 |
electrically active cell | 1.21e-15 | 61 |
epithelial cell | 9.80e-11 | 253 |
fibroblast | 4.12e-10 | 76 |
lining cell | 1.49e-08 | 58 |
barrier cell | 1.49e-08 | 58 |
meso-epithelial cell | 3.24e-08 | 45 |
endothelial cell | 3.69e-08 | 36 |
endothelial cell of vascular tree | 3.13e-07 | 24 |
extraembryonic cell | 3.77e-07 | 19 |
blood vessel endothelial cell | 3.84e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.84e-07 | 18 |