FFCP PHASE1:Hg19::chr16:2034183..2034223,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2671 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4236 | |||
|TSSclassifier=strong | |||
|UniProt=P55789 | |||
|association_with_transcript=33bp_to_ENST00000248114,NM_005262,uc002cob.2_5end | |||
|coexpression_cluster_id=C534 | |||
|description=CAGE_peak_1_at_GFER_5end | |||
|id=chr16:2034183..2034223,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.53e-22!254;CL:0002321!8.20e-22!248;CL:0000220!2.61e-21!246;CL:0000548!3.13e-19!679;CL:0000004!3.13e-19!679;CL:0000255!3.13e-19!679;CL:0000012!1.42e-18!682;CL:0000222!1.95e-18!119;CL:0000183!7.83e-11!59;CL:0000213!1.09e-10!57;CL:0000215!1.09e-10!57;CL:0002078!1.82e-10!44;CL:0000055!1.54e-09!180;CL:0000144!2.11e-09!625;CL:0000115!5.04e-09!35;CL:0000192!5.49e-09!42;CL:0000514!5.49e-09!42;CL:0000393!7.45e-09!60;CL:0000211!7.45e-09!60;CL:0000187!1.07e-08!54;CL:0000359!6.73e-08!32;CL:1000449!1.09e-07!16;CL:0000680!1.62e-07!57;CL:0000056!1.62e-07!57;CL:0000355!1.62e-07!57;CL:0000071!1.86e-07!18;CL:0002546!1.86e-07!18;CL:0000076!2.81e-07!62;CL:1000497!3.16e-07!18;CL:0002518!3.16e-07!18;CL:0002139!6.96e-07!24;CL:0000003!8.74e-07!722;CL:0002371!9.49e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000115;5.26e-08;36!CL:1000449;9.99e-08;15!CL:0000071;1.89e-07;18!CL:0002078;2.19e-07;45!CL:0000359;2.77e-07;32!CL:1000497;3.11e-07;17!CL:0002518;3.11e-07;17!CL:0000192;5.94e-07;43!CL:0002139;6.71e-07;24!CL:0002681;9.75e-07;12!CL:0002584;9.75e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.92e-22,250;CL:0000066,3.37e-22,253;CL:0000222,7.42e-19,121;CL:0000213,5.26e-11,58;CL:0000215,5.26e-11,58;CL:0002078,8.59e-11,45;CL:0000115,2.38e-09,36;CL:0000192,4.82e-09,43;CL:0000514,4.82e-09,43;CL:0000393,6.26e-09,61;CL:0000211,6.26e-09,61;CL:0000187,9.09e-09,55;CL:0000359,6.73e-08,32;CL:1000449,9.59e-08,15;CL:0000680,1.36e-07,58;CL:0000056,1.36e-07,58;CL:0000355,1.36e-07,58;CL:0000071,1.86e-07,18;CL:0002546,1.86e-07,18;CL:0000076,2.29e-07,63;CL:1000497,3.04e-07,17;CL:0002518,3.04e-07,17;CL:0002139,6.96e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002546;1.89e-07;18!CL:0000514;5.94e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!1.44e-17!238;UBERON:0009142!1.44e-17!238;UBERON:0003914!1.76e-17!118;UBERON:0002100!3.49e-17!216;UBERON:0005256!1.07e-15!143;UBERON:0000490!1.67e-15!138;UBERON:0000055!8.53e-13!69;UBERON:0001981!7.67e-12!60;UBERON:0007500!7.67e-12!60;UBERON:0004537!7.67e-12!60;UBERON:0006965!7.67e-12!60;UBERON:0002049!1.23e-11!79;UBERON:0007798!1.23e-11!79;UBERON:0004872!3.71e-11!84;UBERON:0009569!9.48e-11!113;UBERON:0001637!1.83e-10!42;UBERON:0003509!1.83e-10!42;UBERON:0004572!1.83e-10!42;UBERON:0005177!6.65e-10!107;UBERON:0000486!1.86e-09!82;UBERON:0004290!2.97e-09!70;UBERON:0000914!6.28e-09!83;UBERON:0002329!6.28e-09!83;UBERON:0003077!6.28e-09!83;UBERON:0003059!6.28e-09!83;UBERON:0007282!6.28e-09!83;UBERON:0009618!6.28e-09!83;UBERON:0007285!6.28e-09!83;UBERON:0000926!1.93e-08!448;UBERON:0004120!1.93e-08!448;UBERON:0006603!1.93e-08!448;UBERON:0005172!7.40e-08!55;UBERON:0005173!7.40e-08!55;UBERON:0001134!7.56e-08!61;UBERON:0002036!7.56e-08!61;UBERON:0003082!7.56e-08!61;UBERON:0000481!1.02e-07!347;UBERON:0004211!1.09e-07!16;UBERON:0001285!1.09e-07!16;UBERON:0007684!1.09e-07!16;UBERON:0003220!1.09e-07!16;UBERON:0004208!1.09e-07!16;UBERON:0002385!1.72e-07!63;UBERON:0001015!1.72e-07!63;UBERON:0000383!1.72e-07!63;UBERON:0001986!1.86e-07!18;UBERON:0004638!1.86e-07!18;UBERON:0004852!1.86e-07!18;UBERON:0000487!2.06e-07!22;UBERON:0001851!2.47e-07!16;UBERON:0006914!2.56e-07!25;UBERON:0000466!3.27e-07!126;UBERON:0004573!3.77e-07!33;UBERON:0004571!3.77e-07!33;UBERON:0001009!4.92e-07!113;UBERON:0004535!5.92e-07!110;UBERON:0006555!7.09e-07!17;UBERON:0005103!7.09e-07!17;UBERON:0000083!7.09e-07!17;UBERON:0009201!7.09e-07!17;UBERON:0004819!7.09e-07!17;UBERON:0006553!7.09e-07!17;UBERON:0003074!7.09e-07!17;UBERON:0003060!7.09e-07!17;UBERON:0000119!8.55e-07!312;UBERON:0000353!9.57e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;6.87e-09;74!UBERON:0000490;1.61e-08;33!UBERON:0000025;9.16e-08;93!UBERON:0006555;9.99e-08;15!UBERON:0004819;9.99e-08;15!UBERON:0001285;9.99e-08;15!UBERON:0007684;9.99e-08;15!UBERON:0007500;1.25e-07;56!UBERON:0001981;1.25e-07;56!UBERON:0004537;1.25e-07;56!UBERON:0001637;1.28e-07;42!UBERON:0003509;1.28e-07;42!UBERON:0004572;1.28e-07;42!UBERON:0002113;1.64e-07;24!UBERON:0011143;1.64e-07;24!UBERON:0004638;1.89e-07;18!UBERON:0001986;1.89e-07;18!UBERON:0004852;1.89e-07;18!UBERON:0001851;2.07e-07;15!UBERON:0000487;2.21e-07;22!UBERON:0006914;2.87e-07;25!UBERON:0000353;3.03e-07;15!UBERON:0000055;7.72e-07;65!UBERON:0001225;9.75e-07;12!UBERON:0008987;9.75e-07;12 | |||
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| |||
|short_description=p1@GFER | |||
}} |
Revision as of 01:50, 12 January 2014
Short description: | p1@GFER |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GFER_5end |
Coexpression cluster: | C534_Mesenchymal_Alveolar_Renal_Placental_Fibroblast_Smooth_Tracheal |
Association with transcript: | 33bp_to_ENST00000248114, NM_005262, uc002cob.2_5end |
EntrezGene: | GFER |
HGNC: | 4236 |
UniProt: | P55789 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.92e-22 | 250 |
epithelial cell | 3.37e-22 | 253 |
mesodermal cell | 7.42e-19 | 121 |
lining cell | 5.26e-11 | 58 |
barrier cell | 5.26e-11 | 58 |
meso-epithelial cell | 8.59e-11 | 45 |
endothelial cell | 2.38e-09 | 36 |
smooth muscle cell | 4.82e-09 | 43 |
smooth muscle myoblast | 4.82e-09 | 43 |
electrically responsive cell | 6.26e-09 | 61 |
electrically active cell | 6.26e-09 | 61 |
muscle cell | 9.09e-09 | 55 |
vascular associated smooth muscle cell | 6.73e-08 | 32 |
epithelial cell of nephron | 9.59e-08 | 15 |
muscle precursor cell | 1.36e-07 | 58 |
myoblast | 1.36e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.36e-07 | 58 |
blood vessel endothelial cell | 1.86e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.86e-07 | 18 |
squamous epithelial cell | 2.29e-07 | 63 |
kidney cell | 3.04e-07 | 17 |
kidney epithelial cell | 3.04e-07 | 17 |
endothelial cell of vascular tree | 6.96e-07 | 24 |