FFCP PHASE1:Hg19::chr2:194367545..194367554,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4163 | |||
|description=CAGE_peak_at_chr2:194367545..194367554,+ | |||
|id=chr2:194367545..194367554,+ | |||
|ontology_enrichment_celltype=CL:0000242!2.21e-10!2;CL:0002322!4.54e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002553;2.58e-34;1!CL:0000123;5.48e-18;2!CL:0000242;5.48e-18;2!CL:0000082;2.52e-16;19!CL:0000312;5.35e-08;5!CL:0000240;7.17e-07;6!CL:0000311;7.17e-07;6!CL:0000079;7.17e-07;6!CL:0000237;7.17e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,2.58e-34,1;CL:0000242,5.48e-18,2;CL:0000082,2.52e-16,19;CL:0000312,5.35e-08,5;CL:0000240,7.17e-07,6;CL:0000311,7.17e-07,6;CL:0000079,7.17e-07,6;CL:0000237,7.17e-07,6;CL:0000036,7.17e-07,6;CL:0000357,7.17e-07,6;CL:0000114,7.17e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0008947;5.69e-11;29!UBERON:0001041;1.25e-10;30!CL:0000357;7.17e-07;6!CL:0000114;7.17e-07;6 | |||
|ontology_enrichment_disease=DOID:305!7.48e-15!106;DOID:0050687!1.17e-14!143;DOID:162!7.44e-11!235;DOID:14566!1.75e-10!239 | |||
|ontology_enrichment_disease_v019=DOID:1324;1.91e-20;15!DOID:1325;1.15e-19;7!DOID:3904;1.15e-19;7!DOID:0050615;3.19e-19;16!DOID:5409;1.63e-09;4!DOID:1115;1.29e-07;20 | |||
|ontology_enrichment_disease_v019_2=DOID:1324,1.91e-20,15;DOID:1325,1.15e-19,7;DOID:3904,1.15e-19,7;DOID:0050615,3.19e-19,16;DOID:5409,1.57e-09,4;DOID:1115,1.29e-07,20 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;2.52e-16;19!UBERON:0000115;2.52e-16;19!UBERON:0002048;3.27e-14;22!UBERON:0004807;3.27e-14;22!UBERON:0000117;3.27e-14;22!UBERON:0000171;3.27e-14;22!UBERON:0000170;3.27e-14;22!UBERON:0005911;1.44e-09;36!UBERON:0000072;4.81e-09;37!UBERON:0005181;1.61e-08;35!UBERON:0005178;1.62e-08;34!UBERON:0002224;1.62e-08;34!UBERON:0000065;1.14e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,2.52e-16,19;UBERON:0000115,2.52e-16,19;UBERON:0002048,3.27e-14,22;UBERON:0000117,3.27e-14,22;UBERON:0000171,3.27e-14,22;UBERON:0000170,3.27e-14,22;UBERON:0005597,3.27e-14,22;UBERON:0000118,3.27e-14,22;UBERON:0004807,2.46e-11,28;UBERON:0005178,1.82e-09,34;UBERON:0002224,1.82e-09,34;UBERON:0005181,3.24e-09,35;UBERON:0005153,9.33e-09,37;UBERON:0008947,1.52e-08,38;UBERON:0003258,1.52e-08,38;UBERON:0000072,4.89e-07,47;UBERON:0005157,4.89e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.207322110030741,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,4.34629198682166,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7812832832557,0,0,0,0,1.18193840883968,3.10269035917318,0,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0.23056390438806,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0,0,0,0,0,0,0,0,0,0,0.794858446811959,0,0,0.240476460754601,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0,0,0,0,7.49335849291011,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344429959321631,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,5.60399523799829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0.590969204419841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559277158988962,0.098150233615243,0,0,0,0,0,0,0,0,0,0,1.81155412280008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0.126166424835079,0.546327859818478,0.633492505057185,0,0.26721740526556,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0.533636729388577,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:194367545..194367554,+ | |||
}} |
Revision as of 07:39, 21 January 2014
Short description: | p@chr2:194367545..194367554, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:194367545..194367554, + |
Coexpression cluster: | C4163_merkel_nonsmall_B_adult_carcinoid_small_bronchogenic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 2.58e-34 | 1 |
Merkel cell | 5.48e-18 | 2 |
epithelial cell of lung | 2.52e-16 | 19 |
keratinocyte | 5.35e-08 | 5 |
stratified squamous epithelial cell | 7.17e-07 | 6 |
keratin accumulating cell | 7.17e-07 | 6 |
stratified epithelial cell | 7.17e-07 | 6 |
keratinizing barrier epithelial cell | 7.17e-07 | 6 |
epithelial fate stem cell | 7.17e-07 | 6 |
stratified epithelial stem cell | 7.17e-07 | 6 |
surface ectodermal cell | 7.17e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 2.52e-16 | 19 |
lung epithelium | 2.52e-16 | 19 |
lung | 3.27e-14 | 22 |
respiratory tube | 3.27e-14 | 22 |
respiration organ | 3.27e-14 | 22 |
pair of lungs | 3.27e-14 | 22 |
lung primordium | 3.27e-14 | 22 |
lung bud | 3.27e-14 | 22 |
respiratory system epithelium | 2.46e-11 | 28 |
thoracic cavity element | 1.82e-09 | 34 |
thoracic cavity | 1.82e-09 | 34 |
thoracic segment organ | 3.24e-09 | 35 |
epithelial bud | 9.33e-09 | 37 |
respiratory primordium | 1.52e-08 | 38 |
endoderm of foregut | 1.52e-08 | 38 |
segment of respiratory tract | 4.89e-07 | 47 |
epithelial fold | 4.89e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
lung cancer | 1.91e-20 | 15 |
bronchus cancer | 1.15e-19 | 7 |
bronchogenic carcinoma | 1.15e-19 | 7 |
respiratory system cancer | 3.19e-19 | 16 |
lung small cell carcinoma | 1.57e-09 | 4 |
sarcoma | 1.29e-07 | 20 |