FFCP PHASE1:Hg19::chr2:216279555..216279566,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_at_chr2:216279555..216279566,+ | |||
|id=chr2:216279555..216279566,+ | |||
|ontology_enrichment_celltype=CL:0000057!3.10e-26!75;CL:0000055!8.83e-26!180;CL:0002371!1.93e-17!591;CL:0000144!1.22e-16!625;CL:0000048!2.32e-13!430;CL:0000723!3.74e-13!436;CL:0000548!7.95e-13!679;CL:0000004!7.95e-13!679;CL:0000255!7.95e-13!679;CL:0000012!2.07e-12!682;CL:0000034!5.69e-12!444;CL:0002620!2.66e-10!23;CL:0002334!1.50e-09!12;CL:0000183!2.06e-09!59;CL:0000680!4.91e-09!57;CL:0000056!4.91e-09!57;CL:0000355!4.91e-09!57;CL:0002320!9.37e-09!365;CL:0000187!5.58e-08!54;CL:0000003!1.12e-07!722;CL:0002494!3.27e-07!16;CL:0000134!4.63e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.61e-14;23!CL:0002334;4.27e-12;12!CL:0000057;1.25e-11;73!CL:0000134;1.94e-11;55!CL:0000723;7.00e-10;61!CL:0002320;1.36e-09;188!CL:0000048;5.49e-09;58!CL:0000034;7.02e-09;69!CL:0000349;3.83e-08;19!CL:0000188;6.11e-08;9!CL:0002494;1.22e-07;16!CL:0002548;2.53e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.90e-31,76;CL:0000048,1.02e-18,427;CL:0000723,5.72e-18,433;CL:0000034,5.24e-17,441;CL:0002320,1.97e-16,361;CL:0000134,7.89e-14,354;CL:0002620,1.76e-13,23;CL:0002334,2.73e-12,12;CL:0000219,3.10e-11,386;CL:0000188,2.40e-08,9;CL:0000349,4.79e-08,19;CL:0000136,7.27e-08,15;CL:0002494,1.53e-07,16;CL:0002548,5.18e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.14e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:17;9.81e-07;5!DOID:450;9.81e-07;5!DOID:66;9.81e-07;5!DOID:423;9.81e-07;5!DOID:0080000;9.81e-07;5!DOID:11722;9.81e-07;5 | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!7.48e-11!83;UBERON:0002329!7.48e-11!83;UBERON:0003077!7.48e-11!83;UBERON:0003059!7.48e-11!83;UBERON:0007282!7.48e-11!83;UBERON:0009618!7.48e-11!83;UBERON:0007285!7.48e-11!83;UBERON:0005256!1.33e-10!143;UBERON:0004290!3.01e-09!70;UBERON:0002199!5.72e-09!45;UBERON:0002416!5.72e-09!45;UBERON:0002384!9.92e-09!375;UBERON:0000490!2.80e-08!138;UBERON:0003102!4.03e-08!95;UBERON:0000486!4.78e-08!82;UBERON:0001134!1.12e-07!61;UBERON:0002036!1.12e-07!61;UBERON:0003082!1.12e-07!61;UBERON:0001013!2.01e-07!14;UBERON:0002385!4.42e-07!63;UBERON:0001015!4.42e-07!63;UBERON:0000383!4.42e-07!63;UBERON:0002100!8.39e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;9.09e-10;14!UBERON:0002199;2.81e-09;46!UBERON:0002416;2.81e-09;46!UBERON:0002384;2.89e-08;198!UBERON:0003102;2.68e-07;50!UBERON:0002097;3.59e-07;41!UBERON:0004905;7.71e-07;8!UBERON:0000982;7.71e-07;8!UBERON:0004770;7.71e-07;8!UBERON:0000478;9.47e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,4.54e-17,371;UBERON:0002199,2.77e-13,46;UBERON:0002416,2.77e-13,46;UBERON:0001013,8.96e-10,14;UBERON:0002097,1.30e-09,41;UBERON:0000926,1.52e-07,315;UBERON:0004120,1.52e-07,315;UBERON:0006603,1.52e-07,315;UBERON:0004923,2.71e-07,66;UBERON:0007524,4.00e-07,73;UBERON:0003102,5.44e-07,99;UBERON:0004905,7.02e-07,8;UBERON:0000982,7.02e-07,8;UBERON:0004770,7.02e-07,8;UBERON:0002329,8.39e-07,71;UBERON:0003059,8.39e-07,71;UBERON:0007282,8.39e-07,71;UBERON:0004290,8.39e-07,71;UBERON:0009618,8.39e-07,71 | |||
|phase1_expression=2.18014055124668,2.35510576280081,1.40954404095971,2.00146596706261,2.23480547213644,8.72338524100369,2.53299878168311,2.52687949370732,1.30592814099919,0,0,0.873765488520689,2.37390280405608,1.36142988256051,1.65698687863958,1.34465029290355,1.80808358407193,2.92124036154949,4.39139518911456,0.246242116153576,0.612002073732759,0.626909442956176,0,0,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.71911117614727,1.79007586580942,2.89151321907653,0,1.59331170856906,0,11.1926020169606,0.189069634328136,0.886917589850256,0.790513071238134,0.0654895377488563,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,2.09749718104953,1.10047216776027,0,0,0,0,0.402829317109147,0,0.24406205754817,0,4.0507097394088,0,0,0,0,0,0.366403487860815,0,0,0,4.47274756525787,3.67228483827281,5.95841313659485,15.7760141411848,3.90135220418193,1.12135520028461,2.1349799145941,6.41335625884616,1.24484414159907,2.42479209725439,3.10577615915572,1.36221684880438,7.49028701823999,0,5.61888138294577,0,5.23070381931304,1.29177948508141,1.13311061057692,1.96631129383148,1.02077085627447,1.10550885580591,0.619954687054593,0,0.989067717114227,0,2.87447256726495,0.841680569770331,0.750711119231785,0,0.877955241761676,1.83892677479412,0.45071417671979,2.60894021268048,5.02290979928813,2.34913127700424,2.33125091275518,5.40163972951924,1.33968288009971,6.44101350114073,0.37223371266318,3.37552664482532,2.14361411354637,9.59248342127635,1.01254888506529,1.13152239773168,7.4552014428489,1.0075209822764,0.67824236924195,0,0,0,0,0,0,0,0,0,0,3.85944562915731,0,11.6091982007995,12.9938306700525,0,0,0,0,0,0,0,0,0,0,1.40241773803446,2.4694440679884,0,0,0.982827216677626,0,0,0.245976877086227,0.857839051492628,0.98775256867763,0,0,0.0925884451585296,0,1.03993478527958,0,0.115930404975077,1.52631302506568,0.288732895522148,0,0.761016608938393,0,0,0,0,0,0,0.671928512795438,0,4.20925056703387,3.19697332365358,0,0,0,0,0,0,0,0,0,0,0.514137463516618,0,0,0.224262168690721,1.30788020649984,0.66004457238855,1.29271715757778,0,0.845302752556,1.06375246633948,0,1.54324424557285,0,1.0656887160644,0.428933980974443,0.542621605391443,1.64648067356154,1.95441710576241,0.710783897485092,1.58390374586686,0.301439377059586,0,0.099972991182057,0,0,0,5.03212196532324,1.14861935834114,0,1.44781306667579,3.49309748335652,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,7.00238729483548,2.98391526069709,6.65506756898583,11.5978842718155,5.99269177128952,3.86566669475954,0,0,4.1389228517002,1.32845119707087,0.553107505625109,0.868836144680828,0.783204629850962,2.74514739048685,0,0,0,0,0,3.93107381328584,2.23297027036899,5.52463103837025,5.89386198309454,1.79394808957981,0.511707249066704,5.46903331888265,5.93672265779964,3.70103265126373,4.79416658345443,1.47828880824856,2.59627214591811,5.694308544538,0.362578348774867,3.20810352485256,0,0.68888668898764,0.910455840033585,1.18011973463482,0,0.15403067420883,0,1.46139224653261,0.316654886678627,0,0.170093705276516,0.431831832204279,0,0.270946437543853,1.50506932156456,0,0,0,0,0,0,0.328014645699706,0,0.206082023295445,0,0.082509499920588,0,0,1.6068392984416,1.93341436584244,3.54311819363682,2.76306614507033,1.51620229732984,4.61907052933577,5.51063436874068,1.87498580315422,2.67096106940212,1.65284915360978,0.960950336825531,0.510450849978337,0.6069466851333,0.464845549297286,17.9443037693465,0,0,0,0,0,0,0.744316738719335,0.632758849437452,0.762520775695299,0.511795582622668,0.855877976067841,0,0.78494864019923,0.179872457583315,0,0.589062011728432,0.202182481573316,0,0.421258456238981,0.48763373908959,1.70599442741899,0,1.9109987597118,0.848432591722276,0,0,1.32687795048244,0,0.578775534266688,1.31178950409327,0,0.30982349809975,0.281695602532241,1.00387946542836,2.65272410735427,0,0.354761064070598,1.47775344708365,7.24448764511784,0,0.349934720244983,0,0,0,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,2.14870036263921,0,1.53580351049616,0,0,4.78627431598495,0,0,0.996239941255349,0,0,0,0,4.0435146396035,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0.683652335082007,0,0,0,10.5270382711533,1.37396390102793,30.3829822330622,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0.411125773940253,0,0,0,0,0,0,0,0,0.343189995723929,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,3.60299883542404,0,1.3393140992228,0.494495150286999,0.943649613958588,0.295282444544246,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0.717149357331379,0,0,0,0,0.542999601753713,0,3.5924609612035,0,0,2.72620834856675,0,0.146552233678082,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0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| |||
|short_description=p@chr2:216279555..216279566,+ | |||
}} |
Revision as of 08:25, 21 January 2014
Short description: | p@chr2:216279555..216279566, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:216279555..216279566, + |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.90e-31 | 76 |
multi fate stem cell | 1.02e-18 | 427 |
somatic stem cell | 5.72e-18 | 433 |
stem cell | 5.24e-17 | 441 |
connective tissue cell | 1.97e-16 | 361 |
mesenchymal cell | 7.89e-14 | 354 |
skin fibroblast | 1.76e-13 | 23 |
preadipocyte | 2.73e-12 | 12 |
motile cell | 3.10e-11 | 386 |
cell of skeletal muscle | 2.40e-08 | 9 |
extraembryonic cell | 4.79e-08 | 19 |
fat cell | 7.27e-08 | 15 |
cardiocyte | 1.53e-07 | 16 |
cardiac fibroblast | 5.18e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 4.54e-17 | 371 |
integument | 2.77e-13 | 46 |
integumental system | 2.77e-13 | 46 |
adipose tissue | 8.96e-10 | 14 |
skin of body | 1.30e-09 | 41 |
mesoderm | 1.52e-07 | 315 |
mesoderm-derived structure | 1.52e-07 | 315 |
presumptive mesoderm | 1.52e-07 | 315 |
organ component layer | 2.71e-07 | 66 |
dense mesenchyme tissue | 4.00e-07 | 73 |
surface structure | 5.44e-07 | 99 |
articulation | 7.02e-07 | 8 |
skeletal joint | 7.02e-07 | 8 |
articular system | 7.02e-07 | 8 |
somite | 8.39e-07 | 71 |
presomitic mesoderm | 8.39e-07 | 71 |
presumptive segmental plate | 8.39e-07 | 71 |
dermomyotome | 8.39e-07 | 71 |
trunk paraxial mesoderm | 8.39e-07 | 71 |