FFCP PHASE1:Hg19::chr22:37627612..37627625,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5880 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9802 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-69bp_to_ENST00000481215_5end | |||
|coexpression_cluster_id=C98 | |||
|description=CAGE_peak_18_at_RAC2_5end | |||
|id=chr22:37627612..37627625,- | |||
|ontology_enrichment_celltype=CL:0000084!1.79e-41!25;CL:0000827!1.79e-41!25;CL:0000791!1.10e-33!18;CL:0000789!1.10e-33!18;CL:0002420!1.10e-33!18;CL:0002419!1.10e-33!18;CL:0000790!1.10e-33!18;CL:0000542!2.86e-31!53;CL:0000051!2.86e-31!53;CL:0000838!1.40e-29!52;CL:0000625!4.38e-26!11;CL:0002087!1.25e-17!119;CL:0000738!6.51e-17!140;CL:0000037!7.09e-14!172;CL:0000566!7.09e-14!172;CL:0002031!4.96e-13!124;CL:0000988!1.38e-12!182;CL:0002032!6.52e-12!165;CL:0000837!6.52e-12!165;CL:0000624!1.38e-11!6;CL:0000898!3.79e-09!3;CL:0000842!6.05e-09!3;CL:0000623!2.72e-08!3;CL:0000825!2.72e-08!3;CL:0000224!8.52e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000625;7.40e-48;11!CL:0000791;2.01e-36;18!CL:0000789;2.01e-36;18!CL:0002419;2.01e-36;18!CL:0000084;6.68e-32;25!CL:0000895;1.36e-09;1!CL:0000542;8.26e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,2.55e-48,11;CL:0000791,1.20e-36,18;CL:0000789,1.20e-36,18;CL:0002420,1.20e-36,18;CL:0002419,1.20e-36,18;CL:0000790,1.20e-36,18;CL:0000084,5.60e-32,25;CL:0000827,5.60e-32,25;CL:0000838,1.40e-14,52;CL:0000542,2.81e-14,53;CL:0000051,2.81e-14,53;CL:0000810,2.08e-09,1;CL:0000895,2.08e-09,1;CL:0002436,2.08e-09,1;CL:0002427,2.08e-09,1;CL:0002428,2.08e-09,1;CL:0002429,2.08e-09,1;CL:0002433,2.08e-09,1;CL:0002431,2.08e-09,1;CL:0002432,2.08e-09,1;CL:0002087,6.22e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;2.01e-36;18!CL:0002427;1.36e-09;1!CL:0000051;8.26e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.02e-17!15;UBERON:0000179!2.02e-17!15;UBERON:0000463!2.02e-17!15;UBERON:0004177!4.14e-10!7;UBERON:0002370!1.33e-07!4;UBERON:0005058!1.33e-07!4;UBERON:0009113!1.33e-07!4;UBERON:0003295!1.33e-07!4;UBERON:0005562!1.33e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.64e-19;15!UBERON:0000179;2.64e-19;15!UBERON:0000463;2.64e-19;15!UBERON:0002370;1.88e-18;2!UBERON:0005058;1.88e-18;2!UBERON:0009113;1.88e-18;2!UBERON:0002390;1.07e-13;32!UBERON:0002193;1.27e-08;42!UBERON:0004177;6.50e-08;5!UBERON:0005057;6.50e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.01e-19,4;UBERON:0005058,1.01e-19,4;UBERON:0009113,1.01e-19,4;UBERON:0003295,1.01e-19,4;UBERON:0005562,1.01e-19,4;UBERON:0000178,4.46e-19,15;UBERON:0000179,4.46e-19,15;UBERON:0000463,4.46e-19,15;UBERON:0003351,2.41e-13,6;UBERON:0004177,1.62e-11,7;UBERON:0005057,1.62e-11,7;UBERON:0000974,3.30e-08,10;UBERON:0003408,3.30e-08,10;UBERON:0001042,3.30e-08,10;UBERON:0009145,3.30e-08,10;UBERON:0006562,1.67e-07,11;UBERON:0009722,1.67e-07,11;UBERON:0007690,1.67e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0.434021741431704,0,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0.616804496998528,0.167186495390678,0.651844533267181,0,1.94826728407911,0.111410456885174,0.294605907474837,0.221533894583621,0.541607727530031,0.128091319725675,0.130059347559878,0,0.276350017785848,0,0.889719378972363,0.535081656179426,2.09071047609954,0,1.14966148080576,0,1.51811815211702,0.637130828648193,5.85975108470777,2.85135613334512,1.50575119077773,1.53583933385302,2.49861453104692,2.13099526839615,1.64225599384209,0.604820229674197,0,1.73789284659359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.431255149719035,0.128343036279748,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,1.52927441428475,1.13929437434833,0.714695326373367,1.23408681925858,1.29694662238543,0,0.79312517629427,0,0,0,0.185803175125719,0,0.640276590135727,0.159426272728822,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.193373663920732,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0.476128862927481,3.55239004098034,3.35203457197633,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,1.81146414231924,0 | |||
|short_description=p18@RAC2 | |||
}} |
Revision as of 15:47, 21 January 2014
Short description: | p18@RAC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_RAC2_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | -69bp_to_ENST00000481215_5end |
EntrezGene: | RAC2 |
HGNC: | 9802 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 2.55e-48 | 11 |
mature alpha-beta T cell | 1.20e-36 | 18 |
alpha-beta T cell | 1.20e-36 | 18 |
immature T cell | 1.20e-36 | 18 |
mature T cell | 1.20e-36 | 18 |
immature alpha-beta T cell | 1.20e-36 | 18 |
T cell | 5.60e-32 | 25 |
pro-T cell | 5.60e-32 | 25 |
lymphoid lineage restricted progenitor cell | 1.40e-14 | 52 |
lymphocyte | 2.81e-14 | 53 |
common lymphoid progenitor | 2.81e-14 | 53 |
CD4-positive, alpha-beta thymocyte | 2.08e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 2.08e-09 | 1 |
mature CD4 single-positive thymocyte | 2.08e-09 | 1 |
resting double-positive thymocyte | 2.08e-09 | 1 |
double-positive blast | 2.08e-09 | 1 |
CD69-positive double-positive thymocyte | 2.08e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 2.08e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 2.08e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 2.08e-09 | 1 |
nongranular leukocyte | 6.22e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.01e-19 | 4 |
hemolymphoid system gland | 1.01e-19 | 4 |
thymic region | 1.01e-19 | 4 |
pharyngeal gland | 1.01e-19 | 4 |
thymus primordium | 1.01e-19 | 4 |
blood | 4.46e-19 | 15 |
haemolymphatic fluid | 4.46e-19 | 15 |
organism substance | 4.46e-19 | 15 |
pharyngeal epithelium | 2.41e-13 | 6 |
hemopoietic organ | 1.62e-11 | 7 |
immune organ | 1.62e-11 | 7 |
neck | 3.30e-08 | 10 |
gland of gut | 3.30e-08 | 10 |
chordate pharynx | 3.30e-08 | 10 |
pharyngeal region of foregut | 3.30e-08 | 10 |
pharynx | 1.67e-07 | 11 |
entire pharyngeal arch endoderm | 1.67e-07 | 11 |
early pharyngeal endoderm | 1.67e-07 | 11 |