FFCP PHASE1:Hg19::chr22:37640456..37640490,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5880 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9802 | |||
|TSSclassifier=strong | |||
|UniProt=B1AH80,B1AH77,B1AH78 | |||
|association_with_transcript=0bp_to_ENST00000405484,ENST00000406508,ENST00000441619_5end | |||
|description=CAGE_peak_5_at_RAC2_5end | |||
|id=chr22:37640456..37640490,- | |||
|ontology_enrichment_celltype=CL:0000003!2.87e-15!722;CL:0002371!8.88e-13!591;CL:0000723!5.23e-12!436;CL:0000048!7.16e-12!430;CL:0000192!2.80e-11!42;CL:0000514!2.80e-11!42;CL:0000034!3.05e-11!444;CL:0000144!1.21e-10!625;CL:0000055!3.46e-10!180;CL:0000187!6.50e-10!54;CL:0000680!1.85e-09!57;CL:0000056!1.85e-09!57;CL:0000355!1.85e-09!57;CL:0000183!6.16e-09!59;CL:0000359!6.48e-09!32;CL:0000057!7.06e-09!75;CL:0000012!1.15e-08!682;CL:0000548!2.42e-08!679;CL:0000004!2.42e-08!679;CL:0000255!2.42e-08!679;CL:0000084!1.19e-07!25;CL:0000827!1.19e-07!25;CL:0000393!1.88e-07!60;CL:0000211!1.88e-07!60;CL:0000791!9.62e-07!18;CL:0000789!9.62e-07!18;CL:0002420!9.62e-07!18;CL:0002419!9.62e-07!18;CL:0000790!9.62e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.22e-10;32!CL:0000084;9.72e-09;25!CL:0000192;2.00e-08;43!CL:0000791;4.87e-08;18!CL:0000789;4.87e-08;18!CL:0002419;4.87e-08;18!CL:0002334;6.86e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.90e-13,427;CL:0000723,6.69e-13,433;CL:0000034,9.00e-13,441;CL:0000192,1.47e-11,43;CL:0000514,1.47e-11,43;CL:0000359,5.01e-11,32;CL:0000084,2.61e-09,25;CL:0000827,2.61e-09,25;CL:0000187,2.96e-09,55;CL:0000680,7.07e-09,58;CL:0000056,7.07e-09,58;CL:0000355,7.07e-09,58;CL:0000791,1.50e-08,18;CL:0000789,1.50e-08,18;CL:0002420,1.50e-08,18;CL:0002419,1.50e-08,18;CL:0000790,1.50e-08,18;CL:0000393,1.84e-07,61;CL:0000211,1.84e-07,61;CL:0000134,3.75e-07,354;CL:0000057,6.71e-07,76;CL:0002320,9.20e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000514;2.00e-08;43!CL:0000790;4.87e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.27e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.42e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004535!1.99e-08!110;UBERON:0001009!8.77e-08!113;UBERON:0000486!1.01e-07!82;UBERON:0001134!1.17e-07!61;UBERON:0002036!1.17e-07!61;UBERON:0003082!1.17e-07!61;UBERON:0001637!2.89e-07!42;UBERON:0003509!2.89e-07!42;UBERON:0004572!2.89e-07!42;UBERON:0002385!4.05e-07!63;UBERON:0001015!4.05e-07!63;UBERON:0000383!4.05e-07!63;UBERON:0004290!4.35e-07!70;UBERON:0000914!6.56e-07!83;UBERON:0002329!6.56e-07!83;UBERON:0003077!6.56e-07!83;UBERON:0003059!6.56e-07!83;UBERON:0007282!6.56e-07!83;UBERON:0009618!6.56e-07!83;UBERON:0007285!6.56e-07!83 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,1.18e-08,109;UBERON:0001637,2.91e-08,42;UBERON:0003509,2.91e-08,42;UBERON:0004572,2.91e-08,42;UBERON:0001009,4.57e-08,112;UBERON:0001134,1.03e-07,62;UBERON:0002036,1.03e-07,62;UBERON:0003082,1.03e-07,62;UBERON:0002385,3.37e-07,64;UBERON:0001015,3.37e-07,64;UBERON:0000383,3.37e-07,64;UBERON:0002384,8.93e-07,371 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0,1.0007329835313,0.446961094427288,0,0,1.89515962028049,0,0.491467873003018,1.39560233594486,0.655324116390517,1.84636884759917,0.495065411840187,0.331397375727916,1.34465029290355,1.80808358407193,0.730310090387373,2.43966399395253,0,0,0.313454721478088,0,0,0,1.06978768047132,0.821005894499457,1.10195093839151,2.36018566109342,0.383829398097213,0.309632246632152,0,0.90361775633475,0.739508020333575,0,0,0,0,0,0.868043482863407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0.422510572623884,0.425208599930087,0.419317291016752,0,0,0.16072558669708,0.570025487482497,0.39783335439818,0.365328307529268,0,0,0,0.426730222566507,0.800791974072025,0,0,0,0,0,0,1.32171328579026,0,1.58030450865046,1.37696839079683,1.57204305099666,1.43921049299656,15.3811575759424,1.62961133316795,2.8406868344084,0,5.01347055983281,0.589211814949674,0.664601683750863,1.08321545506006,14.602410448727,21.0696143047003,8.87964684859851,6.07970039128866,7.24507714337631,2.81744470007915,2.40786745280742,2.09071047609954,5.66546713487831,1.14966148080576,2.06176467289578,1.77113784413652,2.54852331459277,1.30216690771284,3.8018081777935,1.50575119077773,2.04778577847069,6.24653632761729,1.89421801635213,0,1.61285394579786,1.87208137048455,0.579297615531196,4.87613732627923,0,0,0,0,0.434539556882471,0.795285947051099,0,0,0,0,0.196468613246569,0.364295288292542,0.370784442784429,3.57002133020152,2.96020553408754,1.46253756570752,0,0,0,0.39752481473341,0.860234595106124,0.347140501607594,0,0,1.10047216776027,0.835979866147242,0.258416759169329,1.42306505074684,0,0,0,0.488124115096339,0,0,0.267899184852239,0,0.563057402416611,0,0,0,0,0,0.436094052142534,0.993943903390637,0.633152558322899,1.45650098894541,0,2.4826786753885,0.560677600142307,0,2.71334303258876,0.933633106199299,0.808264032418128,1.47115712802113,0.151357427644931,0,0.234321431833797,0.936480230490962,0.570471821544449,1.19558944441441,0.704606991862589,0.647491777472526,0.280901613404497,0.408308342509787,1.47401180774122,0.103325781175765,0,0.247266929278557,7.28129089550421,8.62341770179486,0.673344455816265,0,1.38532057742091,1.75591048352335,2.14541457059314,1.05166641234618,1.24775401476023,0.179389635688862,1.2813443329114,2.11931901159562,0.900273288253207,2.47326070172253,0.257640540045629,2.04728541964749,1.0126579934476,2.72823614451356,0.504867548488229,1.38074847963449,0,0.355009592516614,2.11579406278045,0.67824236924195,0.386521706326594,0.818238361772504,1.14721838155602,0,0,0,0,0,0,0,0,0,2.3218396401599,2.16563844500876,0.118306800039844,0.337169380156203,0,0,0,0,0,0,0,2.21446636387394,2.80483547606892,2.4694440679884,2.94017422771084,0,0,0.590789906681404,1.32438929824395,0,0.686271241194102,0.98775256867763,1.1240175325762,0.804231779293047,0.370353780634118,0.325808305310325,0,0,0.115930404975077,0.234817388471643,0.433099343283221,0.925971025153221,0,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0,0.671928512795438,0.283550194484773,0.268675568108545,0.290633938513962,0.766765358330422,0.985326475791887,2.11316241631742,1.86595303986695,1.8735593944205,1.8936365013957,0,0.763976851116555,0,0,0,0,0,0,0,0.1466765716419,1.68053230485111,0,0,1.06375246633948,1.04007436911366,2.57207374262142,0,1.0656887160644,0.285955987316295,1.08524321078289,0.823240336780769,0.65147236858747,0.355391948742546,0,1.20575750823834,6.10073421020206,1.69954085009497,0,0,0,0.479249710983165,0,0,1.01346914667305,0.205476322550383,0,9.63932238344335,0.591092280605782,1.07813787429759,2.31017465303547,0,0,0,0,0,0.749007023947182,0,0.414415513436035,0.24538298343828,1.00034104211935,0.271265023699736,0,0.356857977594324,0,0.35142424497814,1.20378439891088,0,1.03473071292505,3.98535359121262,0.737476674166813,1.12948698808508,0.195801157462741,0,0.620304078368662,1.50999940573032,0.853820462427555,0.303127571446259,0,0.30239029332968,1.48864684691266,0,0.561320188866147,2.30650468660262,1.02341449813341,1.12597744800525,1.48418066444991,3.54682295746108,2.48586415438378,4.10635780069046,4.15403543346897,4.76462551685833,0,0.40101294060657,0.276242966807689,0.459257792658427,0.546273504020151,0.262248829918848,0,0.462092022626489,1.56869953835371,1.46139224653261,0.105551628892876,1.13733384070897,0.850468526382578,0.647747748306418,0,0,0.501689773854853,1.01950509218015,0.831076008928724,0.223874754722178,5.04297716285649,6.01301537357271,0.256450125116389,0.328014645699706,0.325378394664303,0.103041011647722,0,0,0.574265537996172,2.60024098414608,0,0.193341436584244,0.462145851343933,0.460511024178389,0.827019434907183,1.07420244868274,1.0151168573996,0.255679882248303,0.0890320356467374,0.330569830721956,0.192190067365106,0,0.10115778085555,5.57814659156743,0.31481234683064,2.0911118104818,3.69640296211307,2.66153015158511,3.47973196830029,3.15051172476664,0.715624433709956,0,0,1.33441135746677,1.535386747868,0.855877976067841,2.22742273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| |||
|short_description=p5@RAC2 | |||
}} |
Revision as of 15:48, 21 January 2014
Short description: | p5@RAC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RAC2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000405484, ENST00000406508, ENST00000441619_5end |
EntrezGene: | RAC2 |
HGNC: | 9802 |
UniProt: | B1AH80B1AH77B1AH78 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.90e-13 | 427 |
somatic stem cell | 6.69e-13 | 433 |
stem cell | 9.00e-13 | 441 |
smooth muscle cell | 1.47e-11 | 43 |
smooth muscle myoblast | 1.47e-11 | 43 |
vascular associated smooth muscle cell | 5.01e-11 | 32 |
T cell | 2.61e-09 | 25 |
pro-T cell | 2.61e-09 | 25 |
muscle cell | 2.96e-09 | 55 |
muscle precursor cell | 7.07e-09 | 58 |
myoblast | 7.07e-09 | 58 |
multi-potent skeletal muscle stem cell | 7.07e-09 | 58 |
mature alpha-beta T cell | 1.50e-08 | 18 |
alpha-beta T cell | 1.50e-08 | 18 |
immature T cell | 1.50e-08 | 18 |
mature T cell | 1.50e-08 | 18 |
immature alpha-beta T cell | 1.50e-08 | 18 |
electrically responsive cell | 1.84e-07 | 61 |
electrically active cell | 1.84e-07 | 61 |
mesenchymal cell | 3.75e-07 | 354 |
fibroblast | 6.71e-07 | 76 |
connective tissue cell | 9.20e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 1.18e-08 | 109 |
artery | 2.91e-08 | 42 |
arterial blood vessel | 2.91e-08 | 42 |
arterial system | 2.91e-08 | 42 |
circulatory system | 4.57e-08 | 112 |
skeletal muscle tissue | 1.03e-07 | 62 |
striated muscle tissue | 1.03e-07 | 62 |
myotome | 1.03e-07 | 62 |
muscle tissue | 3.37e-07 | 64 |
musculature | 3.37e-07 | 64 |
musculature of body | 3.37e-07 | 64 |
connective tissue | 8.93e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.42e-07 | 14 |