FFCP PHASE1:Hg19::chr3:57583064..57583079,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=378 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=655 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-3bp_to_ENST00000489843_5end | |||
|coexpression_cluster_id=C938 | |||
|description=CAGE_peak_1_at_ARF4_5end | |||
|id=chr3:57583064..57583079,- | |||
|ontology_enrichment_celltype=CL:0000548!2.32e-43!679;CL:0000004!2.32e-43!679;CL:0000255!2.32e-43!679;CL:0000012!5.00e-43!682;CL:0000144!1.97e-38!625;CL:0002371!1.35e-35!591;CL:0000055!7.35e-27!180;CL:0000003!7.36e-25!722;CL:0000063!1.02e-20!578;CL:0000048!1.02e-19!430;CL:0000723!1.96e-19!436;CL:0000192!1.71e-18!42;CL:0000514!1.71e-18!42;CL:0000222!2.31e-18!119;CL:0000034!4.54e-18!444;CL:0000220!9.10e-18!246;CL:0000359!3.58e-17!32;CL:0002321!3.98e-17!248;CL:0000057!4.25e-17!75;CL:0000680!5.44e-17!57;CL:0000056!5.44e-17!57;CL:0000355!5.44e-17!57;CL:0000187!3.57e-16!54;CL:0000183!1.58e-14!59;CL:0000393!5.90e-14!60;CL:0000211!5.90e-14!60;CL:0000134!2.29e-07!358;CL:0002620!4.62e-07!23;CL:0002334!4.86e-07!12;CL:0002320!5.49e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.79e-16;32!CL:0000192;6.81e-13;43!CL:0000187;1.47e-08;55!CL:0000134;3.89e-08;55!CL:0000057;1.70e-07;73!CL:0000048;4.59e-07;58!CL:0002620;4.59e-07;23!CL:0002334;4.83e-07;12!CL:0000393;6.18e-07;61!CL:0000211;6.18e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,8.77e-20,427;CL:0000723,1.70e-19,433;CL:0000222,3.69e-18,121;CL:0000034,4.00e-18,441;CL:0000192,6.37e-18,43;CL:0000514,6.37e-18,43;CL:0000057,1.24e-17,76;CL:0000359,3.58e-17,32;CL:0002321,4.51e-17,250;CL:0000680,1.40e-16,58;CL:0000056,1.40e-16,58;CL:0000355,1.40e-16,58;CL:0000187,9.20e-16,55;CL:0000393,1.27e-13,61;CL:0000211,1.27e-13,61;CL:0000134,1.78e-07,354;CL:0002320,4.33e-07,361;CL:0002620,4.62e-07,23;CL:0002334,4.86e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;6.81e-13;43!CL:0000355;1.48e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.39e-17!448;UBERON:0004120!1.39e-17!448;UBERON:0006603!1.39e-17!448;UBERON:0001637!1.58e-17!42;UBERON:0003509!1.58e-17!42;UBERON:0004572!1.58e-17!42;UBERON:0000914!3.54e-16!83;UBERON:0002329!3.54e-16!83;UBERON:0003077!3.54e-16!83;UBERON:0003059!3.54e-16!83;UBERON:0007282!3.54e-16!83;UBERON:0009618!3.54e-16!83;UBERON:0007285!3.54e-16!83;UBERON:0000490!5.39e-16!138;UBERON:0000486!6.14e-16!82;UBERON:0002049!2.75e-15!79;UBERON:0007798!2.75e-15!79;UBERON:0004290!3.14e-15!70;UBERON:0005256!6.06e-15!143;UBERON:0003914!1.20e-14!118;UBERON:0000055!2.53e-14!69;UBERON:0004872!2.81e-14!84;UBERON:0001981!3.03e-14!60;UBERON:0007500!3.03e-14!60;UBERON:0004537!3.03e-14!60;UBERON:0006965!3.03e-14!60;UBERON:0004573!3.03e-14!33;UBERON:0004571!3.03e-14!33;UBERON:0001134!5.39e-14!61;UBERON:0002036!5.39e-14!61;UBERON:0003082!5.39e-14!61;UBERON:0002100!5.45e-14!216;UBERON:0002385!3.21e-13!63;UBERON:0001015!3.21e-13!63;UBERON:0000383!3.21e-13!63;UBERON:0004535!1.47e-11!110;UBERON:0002204!8.46e-11!167;UBERON:0001009!1.22e-10!113;UBERON:0003104!1.85e-09!238;UBERON:0009142!1.85e-09!238;UBERON:0002199!2.92e-08!45;UBERON:0002416!2.92e-08!45;UBERON:0003081!3.38e-08!216;UBERON:0000468!1.20e-07!659;UBERON:0000947!1.21e-07!21;UBERON:0010191!1.21e-07!21;UBERON:0003102!1.87e-07!95;UBERON:0002097!2.77e-07!40;UBERON:0000480!3.03e-07!626;UBERON:0000467!3.36e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.82e-13;33!UBERON:0004571;7.82e-13;33!UBERON:0001637;2.44e-12;42!UBERON:0003509;2.44e-12;42!UBERON:0004572;2.44e-12;42!UBERON:0007500;3.73e-09;56!UBERON:0001981;3.73e-09;56!UBERON:0004537;3.73e-09;56!UBERON:0000947;1.21e-07;21!UBERON:0010191;1.21e-07;21!UBERON:0000055;1.85e-07;65!UBERON:0002049;3.70e-07;75!UBERON:0007798;3.70e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.58e-17,42;UBERON:0003509,1.58e-17,42;UBERON:0004572,1.58e-17,42;UBERON:0000490,3.17e-17,148;UBERON:0000486,1.20e-15,83;UBERON:0000926,5.40e-15,315;UBERON:0004120,5.40e-15,315;UBERON:0006603,5.40e-15,315;UBERON:0002329,6.51e-15,71;UBERON:0003059,6.51e-15,71;UBERON:0007282,6.51e-15,71;UBERON:0004290,6.51e-15,71;UBERON:0009618,6.51e-15,71;UBERON:0003914,7.43e-15,117;UBERON:0002049,8.78e-15,78;UBERON:0007798,8.78e-15,78;UBERON:0007524,1.70e-14,73;UBERON:0004573,3.03e-14,33;UBERON:0004571,3.03e-14,33;UBERON:0007503,4.54e-14,78;UBERON:0003077,4.78e-14,72;UBERON:0007285,4.78e-14,72;UBERON:0000055,8.17e-14,68;UBERON:0004872,8.53e-14,83;UBERON:0007500,1.01e-13,59;UBERON:0001981,1.01e-13,59;UBERON:0004537,1.01e-13,59;UBERON:0006965,1.01e-13,59;UBERON:0001134,1.15e-13,62;UBERON:0002036,1.15e-13,62;UBERON:0003082,1.15e-13,62;UBERON:0005256,1.21e-13,122;UBERON:0002100,2.72e-13,199;UBERON:0002385,6.48e-13,64;UBERON:0001015,6.48e-13,64;UBERON:0000383,6.48e-13,64;UBERON:0004535,3.76e-11,109;UBERON:0003104,1.55e-10,160;UBERON:0009142,1.55e-10,160;UBERON:0002204,1.77e-10,167;UBERON:0001009,3.00e-10,112;UBERON:0003102,7.52e-09,99;UBERON:0002199,1.02e-08,46;UBERON:0002416,1.02e-08,46;UBERON:0003081,4.94e-08,203;UBERON:0002097,9.79e-08,41;UBERON:0000947,1.21e-07,21;UBERON:0010191,1.21e-07,21;UBERON:0002384,8.43e-07,371 | |||
|phase1_expression=1021.2141698798,558.374166307684,1111.00261308444,780.571727154417,530.095857990763,1058.14662973375,724.437651561368,615.92687659116,126.675029676922,439.618012401199,186.312911848638,425.305351537445,268.778550814794,177.728482850627,163.378906233862,579.54427624143,535.795435413315,646.324429992825,588.446955341351,203.765351117084,176.05259654379,126.322252755669,129.092430196107,128.935708418657,166.720625381898,52.4195963430946,58.8661226356111,57.7737134842406,251.753137183299,128.582848362566,124.936611516073,252.840836731705,261.145531580743,323.534758895939,75.6079877663744,78.903924030519,86.3185291644451,226.030126681006,210.972758738589,178.816957469862,70.5333743855762,85.8318214950296,75.2120657491825,236.708332733131,261.112277088967,210.077796988649,337.71939062396,335.924164513832,364.834104914432,341.20317729407,230.544635876191,360.398918350204,407.144648949946,358.243999389023,417.113578710573,323.02385465511,368.150396428034,434.165771947903,593.190583414809,557.453720031175,464.798090455903,233.534720532195,209.03791318747,221.210645526468,553.42901806471,405.680435654165,491.406754457509,240.69622131596,238.839176636452,307.75659294715,437.098440901292,553.889564525297,562.670124869893,152.103806144598,161.366663673468,158.292277358824,152.092966572354,144.019640235005,130.187725224635,122.840492552478,123.726173217834,126.038266097597,56.3187982276233,46.4217819572812,52.4810459779497,82.7856631779024,40.8403906776733,50.5782147159945,54.8667244411436,41.0243114450207,101.889121470591,90.4345271631246,124.238799140699,121.597622292704,220.840373814725,82.9659867041493,57.0458333330116,83.3182817028229,152.556312257636,50.9918810941568,67.7918314597868,52.0792586308207,68.189354942769,97.5955602314121,85.1411072602279,64.4663633238337,71.2214161701991,66.0951209784484,64.11925834702,83.6988934432711,92.853605976045,79.4060454914044,53.3831627383418,35.0478484797524,42.8595647600405,67.9856056185397,89.6735955028496,72.8490184423175,90.581049742982,46.191985076994,31.2520057851081,33.2658215556931,41.8598831036208,35.0683314563106,54.9695196830322,40.9624646036149,45.1620398306576,168.543237335876,140.138662590558,91.8186720616946,114.589227167562,401.079114102774,462.223161064362,466.617945728475,440.676023448947,321.993811649911,638.614615482033,478.848712377794,181.50684895501,298.669498382074,246.464408654912,102.687595190207,192.712207506755,141.268872700868,122.67891480147,129.900784025253,129.634011505894,133.077768362381,106.963048315884,107.722675385574,317.224802157261,391.406740773287,300.970814893784,330.139838083622,364.125510630198,361.780225151189,381.206818963142,186.576900120255,236.228798423976,309.281846194555,264.65886134071,392.300406550752,159.128461521407,322.808184543673,353.221889276447,228.607304407244,160.987560172964,165.76409927145,343.429267923578,379.706263827252,250.070380465006,604.87211603153,1000.47308150268,264.709089650518,953.192203351621,586.679160541998,1054.7715343581,408.455347946311,360.697744695729,460.316309716834,884.949174599254,553.27531109969,377.810196975316,314.953551298931,322.183411036627,451.196491809541,368.176415742719,184.176645421364,298.425033449786,381.075176791692,260.339601521237,176.151747965647,219.823458451923,249.581083509896,229.06098014799,193.218381131411,163.151408476534,406.296977190462,342.959230909358,417.764065129554,349.967035064508,219.341956482148,140.508097816216,377.915453520426,384.105418270733,579.874909651745,277.790170918297,548.784902128182,639.703440866482,609.065672910554,665.254237739865,407.223617386534,524.228216235939,768.799371496157,779.829628029361,447.594833103838,748.803384663811,609.627564799536,573.378818642883,393.446502296988,689.783638259782,698.111288619319,599.905375594505,432.131267673132,537.855349805126,383.170939439709,91.7242270094557,82.4335158959638,126.999979556384,166.168671189639,107.993324174769,94.1641586415641,862.036923137286,613.00861409782,578.785320466893,763.420873684574,867.699136966842,218.630966473632,225.060561254266,246.313272540919,225.882056155943,218.750961868776,240.355137159541,240.269391141413,263.91787059359,240.082225934548,169.037599109044,245.42310415603,463.432336759156,296.957596998795,223.088861286422,241.775495302696,189.052770138049,69.7511697075148,303.166501008775,384.998166309891,368.212207545939,403.522294194854,225.385956146876,158.326241221086,315.382439540394,214.226565767593,432.99402607582,128.682749522335,508.379646041108,310.820962029592,273.624437932777,206.425755174539,108.258002520421,150.235078366603,118.676596934126,174.801186059011,111.176109391969,784.552190469323,908.111385043035,703.629807613964,318.82834082214,275.81160764975,213.927534974188,508.92112474651,99.0544882648793,113.408479200802,87.0484518638447,114.501887117727,127.567269632968,199.397958141421,205.130532617582,148.833028039754,187.248864212752,189.816812557356,164.636025195213,329.216863637979,283.374044741632,380.185673695805,836.775816100095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| |||
|short_description=p1@ARF4 | |||
}} |
Revision as of 19:23, 21 January 2014
Short description: | p1@ARF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARF4_5end |
Coexpression cluster: | C938_leiomyoma_Smooth_Preadipocyte_hepatic_basal_Adipocyte_Ewing |
Association with transcript: | -3bp_to_ENST00000489843_5end |
EntrezGene: | ARF4 |
HGNC: | 655 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 8.77e-20 | 427 |
somatic stem cell | 1.70e-19 | 433 |
mesodermal cell | 3.69e-18 | 121 |
stem cell | 4.00e-18 | 441 |
smooth muscle cell | 6.37e-18 | 43 |
smooth muscle myoblast | 6.37e-18 | 43 |
fibroblast | 1.24e-17 | 76 |
vascular associated smooth muscle cell | 3.58e-17 | 32 |
embryonic cell | 4.51e-17 | 250 |
muscle precursor cell | 1.40e-16 | 58 |
myoblast | 1.40e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.40e-16 | 58 |
muscle cell | 9.20e-16 | 55 |
electrically responsive cell | 1.27e-13 | 61 |
electrically active cell | 1.27e-13 | 61 |
mesenchymal cell | 1.78e-07 | 354 |
connective tissue cell | 4.33e-07 | 361 |
skin fibroblast | 4.62e-07 | 23 |
preadipocyte | 4.86e-07 | 12 |