FFCP PHASE1:Hg19::chr5:150019871..150019935,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11346 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30672 | |||
|TSSclassifier=not | |||
|UniProt=Q8N3V7 | |||
|association_with_transcript=-271bp_to_NM_001109974,NM_007286_5end | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_4_at_SYNPO_5end | |||
|id=chr5:150019871..150019935,+ | |||
|ontology_enrichment_celltype=CL:0000222!3.59e-25!119;CL:0002139!1.12e-19!24;CL:0000220!1.77e-19!246;CL:0000213!2.53e-19!57;CL:0000215!2.53e-19!57;CL:0000115!5.34e-19!35;CL:0002321!6.85e-19!248;CL:0002078!1.38e-15!44;CL:0000071!2.00e-15!18;CL:0002546!2.00e-15!18;CL:0000359!6.84e-11!32;CL:0000055!3.24e-10!180;CL:0000076!2.64e-09!62;CL:0000192!1.16e-08!42;CL:0000514!1.16e-08!42;CL:1000413!1.28e-08!9;CL:0000680!4.75e-08!57;CL:0000056!4.75e-08!57;CL:0000355!4.75e-08!57;CL:0000187!1.33e-07!54;CL:0000183!2.65e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.57e-33;24!CL:0000115;3.47e-29;36!CL:0000071;1.38e-25;18!CL:0002078;5.34e-20;45!CL:0000213;2.50e-18;58!CL:0000215;2.50e-18;58!CL:1000413;8.73e-14;9!CL:0000359;1.26e-10;32!CL:0002544;1.23e-09;6!CL:0002543;1.73e-09;6!CL:0002138;6.28e-09;6!CL:0002548;1.85e-07;6!CL:0002494;2.96e-07;16!CL:0000076;8.53e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,2.61e-34,36;CL:0002139,5.92e-33,24;CL:0000222,2.12e-32,121;CL:0000213,3.09e-31,58;CL:0000215,3.09e-31,58;CL:0002078,5.86e-31,45;CL:0000071,1.45e-25,18;CL:0002546,1.45e-25,18;CL:0002321,5.61e-22,250;CL:1000413,9.01e-14,9;CL:0000359,2.23e-11,32;CL:0000076,1.29e-10,63;CL:0002544,1.26e-09,6;CL:0002543,1.75e-09,6;CL:0005020,6.35e-09,6;CL:0002138,6.35e-09,6;CL:0005022,6.35e-09,6;CL:0000066,2.03e-08,253;CL:0000192,8.11e-08,43;CL:0000514,8.11e-08,43;CL:0002548,2.21e-07,6;CL:0002494,3.16e-07,16 | |||
|ontology_enrichment_development_v019=CL:0002546;1.38e-25;18!CL:0000222;1.41e-09;121!CL:0005022;6.28e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!5.57e-37!79;UBERON:0007798!5.57e-37!79;UBERON:0000055!9.50e-33!69;UBERON:0001981!4.78e-30!60;UBERON:0007500!4.78e-30!60;UBERON:0004537!4.78e-30!60;UBERON:0006965!4.78e-30!60;UBERON:0004872!2.15e-29!84;UBERON:0001009!1.29e-28!113;UBERON:0004535!2.17e-28!110;UBERON:0000119!1.58e-25!312;UBERON:0000477!4.80e-25!286;UBERON:0000483!2.88e-24!309;UBERON:0003914!8.56e-24!118;UBERON:0004111!1.23e-23!241;UBERON:0000025!2.30e-21!194;UBERON:0001637!2.66e-19!42;UBERON:0003509!2.66e-19!42;UBERON:0004572!2.66e-19!42;UBERON:0000490!1.83e-17!138;UBERON:0001986!2.00e-15!18;UBERON:0004638!2.00e-15!18;UBERON:0004852!2.00e-15!18;UBERON:0004573!4.72e-15!33;UBERON:0004571!4.72e-15!33;UBERON:0000481!1.33e-13!347;UBERON:0000475!4.72e-13!365;UBERON:0000467!1.79e-12!625;UBERON:0000480!2.65e-12!626;UBERON:0000487!5.63e-12!22;UBERON:0006914!7.82e-11!25;UBERON:0000947!1.50e-10!21;UBERON:0010191!1.50e-10!21;UBERON:0000468!4.23e-10!659;UBERON:0003915!1.28e-08!9;UBERON:0004700!1.28e-08!9;UBERON:0001917!1.28e-08!9;UBERON:0000486!9.87e-08!82;UBERON:0007625!2.31e-07!11;UBERON:0005256!2.51e-07!143;UBERON:0002050!2.64e-07!605;UBERON:0005423!2.64e-07!605;UBERON:0000923!3.94e-07!604;UBERON:0005291!3.94e-07!604;UBERON:0006598!3.94e-07!604;UBERON:0002532!3.94e-07!604;UBERON:0001134!4.51e-07!61;UBERON:0002036!4.51e-07!61;UBERON:0003082!4.51e-07!61;UBERON:0007100!6.88e-07!27;UBERON:0000922!7.12e-07!612;UBERON:0004290!7.81e-07!70;UBERON:0002385!8.77e-07!63;UBERON:0001015!8.77e-07!63;UBERON:0000383!8.77e-07!63;UBERON:0000948!9.82e-07!24;UBERON:0005498!9.82e-07!24;UBERON:0004140!9.82e-07!24;UBERON:0009881!9.82e-07!24;UBERON:0004141!9.82e-07!24;UBERON:0003084!9.82e-07!24;UBERON:0007005!9.82e-07!24;UBERON:0004139!9.82e-07!24;UBERON:0004291!9.82e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.38e-25;18!UBERON:0001986;1.38e-25;18!UBERON:0004852;1.38e-25;18!UBERON:0000487;1.16e-19;22!UBERON:0000055;1.19e-19;65!UBERON:0007500;6.15e-19;56!UBERON:0001981;6.15e-19;56!UBERON:0004537;6.15e-19;56!UBERON:0006914;1.13e-18;25!UBERON:0002049;1.67e-18;75!UBERON:0007798;1.67e-18;75!UBERON:0000490;7.90e-17;33!UBERON:0001637;1.08e-16;42!UBERON:0003509;1.08e-16;42!UBERON:0004572;1.08e-16;42!UBERON:0003915;8.73e-14;9!UBERON:0004700;8.73e-14;9!UBERON:0001917;8.73e-14;9!UBERON:0003914;2.63e-13;74!UBERON:0004573;1.40e-12;33!UBERON:0004571;1.40e-12;33!UBERON:0001009;3.07e-12;112!UBERON:0004535;7.93e-12;109!UBERON:0010260;1.02e-10;9!UBERON:0007625;1.32e-10;11!UBERON:0001638;3.37e-09;9!UBERON:0003920;3.37e-09;9!UBERON:0004582;3.37e-09;9!UBERON:0000947;4.37e-09;21!UBERON:0010191;4.37e-09;21!UBERON:0010371;1.90e-08;31!UBERON:0000025;4.01e-08;93!UBERON:0000948;7.17e-08;22!UBERON:0001456;2.71e-07;21!UBERON:0000019;3.10e-07;19!UBERON:0000047;3.10e-07;19!UBERON:0004088;3.10e-07;19!UBERON:0010230;3.10e-07;19!UBERON:0000119;3.76e-07;139!UBERON:0003513;4.94e-07;7!UBERON:0000483;8.53e-07;136 | |||
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| |||
|short_description=p4@SYNPO | |||
}} |
Revision as of 08:22, 22 January 2014
Short description: | p4@SYNPO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SYNPO_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | -271bp_to_NM_001109974, NM_007286_5end |
EntrezGene: | SYNPO |
HGNC: | 30672 |
UniProt: | Q8N3V7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 2.61e-34 | 36 |
endothelial cell of vascular tree | 5.92e-33 | 24 |
mesodermal cell | 2.12e-32 | 121 |
lining cell | 3.09e-31 | 58 |
barrier cell | 3.09e-31 | 58 |
meso-epithelial cell | 5.86e-31 | 45 |
blood vessel endothelial cell | 1.45e-25 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.45e-25 | 18 |
embryonic cell | 5.61e-22 | 250 |
endothelial cell of artery | 9.01e-14 | 9 |
vascular associated smooth muscle cell | 2.23e-11 | 32 |
squamous epithelial cell | 1.29e-10 | 63 |
aortic endothelial cell | 1.26e-09 | 6 |
vein endothelial cell | 1.75e-09 | 6 |
lymphangioblast | 6.35e-09 | 6 |
endothelial cell of lymphatic vessel | 6.35e-09 | 6 |
vascular lymphangioblast | 6.35e-09 | 6 |
epithelial cell | 2.03e-08 | 253 |
smooth muscle cell | 8.11e-08 | 43 |
smooth muscle myoblast | 8.11e-08 | 43 |
cardiac fibroblast | 2.21e-07 | 6 |
cardiocyte | 3.16e-07 | 16 |