FFCP PHASE1:Hg19::chr6:86159389..86159457,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4907 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8021 | |||
|TSSclassifier=strong | |||
|UniProt=E9PGM0,B3KQI8,P21589,Q6NZX3,Q96B60 | |||
|association_with_transcript=87bp_to_ENST00000369647,NM_001204813,NM_002526,uc003pkn.2,uc003pko.3,uc010kbr.2_5end | |||
|description=CAGE_peak_3_at_NT5E_5end | |||
|id=chr6:86159389..86159457,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.64e-33!180;CL:0000680!1.27e-16!57;CL:0000056!1.27e-16!57;CL:0000355!1.27e-16!57;CL:0000057!3.21e-16!75;CL:0000192!6.08e-16!42;CL:0000514!6.08e-16!42;CL:0000183!1.70e-15!59;CL:0000187!2.67e-15!54;CL:0000359!4.32e-15!32;CL:0002371!8.38e-13!591;CL:0000393!6.12e-12!60;CL:0000211!6.12e-12!60;CL:0000144!5.36e-11!625;CL:0000222!3.95e-09!119;CL:0000220!6.63e-09!246;CL:0002321!2.24e-08!248;CL:0002620!3.66e-08!23;CL:0000499!3.05e-07!27;CL:0000548!4.86e-07!679;CL:0000004!4.86e-07!679;CL:0000255!4.86e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.15e-15;32!CL:0000192;1.88e-12;43!CL:0000187;7.98e-09;55!CL:0002620;1.40e-08;23!CL:0000499;2.60e-08;28!CL:0002320;7.61e-08;188!CL:0000134;1.00e-07;55!CL:0000057;1.02e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.64e-18,76;CL:0000680,7.78e-18,58;CL:0000056,7.78e-18,58;CL:0000355,7.78e-18,58;CL:0000192,6.62e-17,43;CL:0000514,6.62e-17,43;CL:0000187,1.99e-16,55;CL:0000359,5.70e-16,32;CL:0000393,9.42e-13,61;CL:0000211,9.42e-13,61;CL:0000723,5.39e-09,433;CL:0000048,8.68e-09,427;CL:0000222,9.46e-09,121;CL:0002620,1.36e-08,23;CL:0000499,2.72e-08,28;CL:0002321,5.57e-08,250;CL:0000034,1.25e-07,441 | |||
|ontology_enrichment_development_v019=CL:0000514;1.88e-12;43!CL:0000355;3.32e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;5.11e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.19e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.11e-23!83;UBERON:0002329!4.11e-23!83;UBERON:0003077!4.11e-23!83;UBERON:0003059!4.11e-23!83;UBERON:0007282!4.11e-23!83;UBERON:0009618!4.11e-23!83;UBERON:0007285!4.11e-23!83;UBERON:0000486!6.57e-21!82;UBERON:0004290!8.25e-19!70;UBERON:0005256!4.47e-17!143;UBERON:0001134!6.99e-15!61;UBERON:0002036!6.99e-15!61;UBERON:0003082!6.99e-15!61;UBERON:0002385!7.93e-15!63;UBERON:0001015!7.93e-15!63;UBERON:0000383!7.93e-15!63;UBERON:0003102!4.45e-12!95;UBERON:0000475!4.68e-12!365;UBERON:0001637!2.25e-10!42;UBERON:0003509!2.25e-10!42;UBERON:0004572!2.25e-10!42;UBERON:0002100!8.80e-10!216;UBERON:0002199!6.54e-09!45;UBERON:0002416!6.54e-09!45;UBERON:0004573!1.19e-08!33;UBERON:0004571!1.19e-08!33;UBERON:0002049!1.77e-08!79;UBERON:0007798!1.77e-08!79;UBERON:0000481!4.65e-08!347;UBERON:0000490!1.61e-07!138;UBERON:0002097!2.08e-07!40;UBERON:0000119!2.28e-07!312;UBERON:0000483!8.82e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.74e-07;33!UBERON:0004571;1.74e-07;33!UBERON:0002204;2.97e-07;70!UBERON:0002199;4.11e-07;46!UBERON:0002416;4.11e-07;46!UBERON:0002097;6.83e-07;41!UBERON:0003102;7.19e-07;50!UBERON:0002384;7.89e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,2.72e-22,83;UBERON:0007524,2.68e-20,73;UBERON:0002329,4.78e-20,71;UBERON:0003059,4.78e-20,71;UBERON:0007282,4.78e-20,71;UBERON:0004290,4.78e-20,71;UBERON:0009618,4.78e-20,71;UBERON:0003077,8.13e-20,72;UBERON:0007285,8.13e-20,72;UBERON:0007503,1.80e-19,78;UBERON:0001134,7.28e-16,62;UBERON:0002036,7.28e-16,62;UBERON:0003082,7.28e-16,62;UBERON:0002385,8.27e-16,64;UBERON:0001015,8.27e-16,64;UBERON:0000383,8.27e-16,64;UBERON:0003102,6.50e-13,99;UBERON:0005256,1.86e-12,122;UBERON:0003104,2.32e-11,160;UBERON:0009142,2.32e-11,160;UBERON:0002199,2.74e-10,46;UBERON:0002416,2.74e-10,46;UBERON:0001637,7.41e-10,42;UBERON:0003509,7.41e-10,42;UBERON:0004572,7.41e-10,42;UBERON:0000490,1.91e-09,148;UBERON:0002097,1.19e-08,41;UBERON:0004573,2.58e-08,33;UBERON:0004571,2.58e-08,33;UBERON:0002100,1.76e-07,199;UBERON:0002049,6.67e-07,78;UBERON:0007798,6.67e-07,78;UBERON:0000075,9.68e-07,16 | |||
|phase1_expression=8.3572054464456,9.63452357509424,6.90676580070259,0,2.68176656656373,5.23403114460221,10.1319951267324,17.6881564559513,6.7908263331958,6.38908234903923,2.09340350391728,12.2327168392896,16.881086606621,11.8815698841645,12.5931002776608,16.1358035148426,25.313170177007,27.7517834347202,20.0052447504108,17.8525534211342,17.9520608294943,26.3301966041594,3.72106783270374,4.92747930262383,2.00868223351684,2.13957536094264,2.13461532569859,2.12519109546934,0.393364276848904,0.383829398097213,0.154816123316076,6.43594857135249,3.91567694411725,2.21852406100073,0,0,0,0,0,0.434021741431704,0,0,0,0,0,0.242584061187816,0,0.822335776043652,0.619412741790207,0,0,0,0.689491361473237,1.29096936716765,0,0.188242339542605,0.272906150057846,0,0.612167784741805,0.641858054152187,0.639337125799041,0,0,0,0,0,0,0.251248665256743,0.521482918420201,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,5.27988733383968,4.91524750135918,4.44754626931777,7.68114400619713,7.60752375368424,8.62128659931725,5.94940385506376,7.63243003628291,3.41527781465669,7.04684627245127,1.52909291250092,0,0.560508562981536,0,1.57367816091066,0.393010762749165,0.822405995998037,0,1.30368906653436,1.89379122293893,1.94826728407911,1.55974639639243,0.883817722424512,0.443067789167242,1.35401931882508,0,0.390178042679635,1.97325485524411,2.21080014228679,2.60822777161547,2.22429844743091,0.802622484269139,1.04535523804977,2.83273356743915,2.68254345521345,0.68725489096526,0.506039384039006,11.4683549156675,14.3238359848412,19.9594929334159,9.937957859133,12.4147012819786,12.4930726552346,7.57687206540854,18.064815932263,5.84659555351724,3.4767225451856,4.63438092424957,0,1.34140171940727,1.02290049474824,29.999449647919,23.0615438892509,28.6796107542431,28.6302940938396,35.0377106617898,22.1211472163919,25.4988807081949,11.5941917114926,3.99486180268024,7.28590576585084,4.44941331341315,0.97364218096405,0,0.132957960518865,0,0,0,0.39752481473341,6.02164216574287,0.694281003215189,0.56530794192401,1.25849830862972,0.825354125820202,1.8809546988313,0.516833518338658,2.84613010149368,1.00416183829401,0.805658634218294,0,0.488124115096339,0.735326160691737,0,1.3394959242612,1.34717623575702,0.450445921933289,0,0,0.366403487860815,2.63560834872127,0,4.36094052142534,12.9212707440783,12.1565291197997,18.140057771411,6.59724227722272,26.2454602826784,13.4562624034154,8.5399196583764,18.9934012281213,4.97937656639626,3.63718814588158,2.94231425604226,9.83823279692054,13.25204626304,8.20125011418288,29.6552072988804,22.818872861778,44.3862581238849,30.2981006500913,23.3097039890109,26.4047516600227,18.9863379267051,34.7621117992303,8.88601718111583,77.2201857233335,71.9546764200601,7.28129089550421,9.3420358436111,25.0820809791559,27.776311411576,22.9963215851872,53.9942473683431,55.1678032438235,108.321640471656,7.94025282120147,13.0954434052869,14.308345050844,16.5306882904458,17.1051924768109,17.4158774412962,4.3798891807757,14.517114793864,18.9029492110218,11.9847516348274,6.81571190459109,17.6735805393215,19.5591728750762,15.2654124782144,21.3594448242597,11.3605596848027,6.3776081543888,7.9096374971342,14.0534251740612,0,0,0.116193942869518,0,0,0,17.2094485562798,34.7350106624158,16.5761905622977,19.0390850493111,12.271951188383,0.118306800039844,0.168584690078102,0,0,0,0,0,0,0,0.738155454624648,8.41450642820675,0.4115740113314,0,0,0,0,0,0.245976877086227,38.9458929377653,6.14601598288303,5.62008766288098,22.1163739305588,10.9254365287065,15.3129903495853,2.07986957055916,25.9796415645492,20.6356120855637,26.6517735915315,2.02113026865503,0,0.951270761172991,0,0,0,0,0,6.56136837907439,11.7587489739202,9.78248170972467,10.2992301108276,7.55648240136301,15.3353071666084,1.47798971368783,0.528290604079356,0.207328115540772,0,0,1.58744735730423,8.78573378784039,2.34434894420094,10.2643467613623,5.2442021278695,4.50514586765876,0.285826432630578,26.5750669898505,10.899001720832,53.0969189343678,26.1128865830711,7.15312891703765,16.060752298564,21.5409874433745,21.8415617513869,11.8315392160585,25.5328437641901,21.8466186793201,1.71573592389777,1.08524321078289,1.64648067356154,22.8015329005615,0.710783897485092,9.50342247520115,6.02878754119172,20.0452695478068,3.79897366491817,0,0,0,21.3266121387509,4.59447743336456,99.8458335285029,21.2828520801341,20.9585849001391,39.0352899862972,0,1.37921532141349,0.862510299438069,0.641715181398742,1.77866236955724,0,0.773288812777695,1.34013012267479,0.637938751653163,0,0,0,12.1464576801948,17.5059682370887,25.7701772514749,18.9253483993034,10.1704523614382,6.30809660135739,14.8769597040746,16.2510893852968,15.9185252839189,19.6598835455759,20.5909935545985,32.8177120004232,19.9832313276591,11.5522682903017,11.3237329857582,0.206768026122887,0.215714200818617,1.70764092485511,3.03127571446259,1.66435439510497,3.62868351995616,7.69134204238208,11.5096479966047,12.6297042494883,7.56020980608636,12.7926812266676,15.4419764297863,5.93672265779964,48.5760535478365,56.8197521002007,48.9477849842302,24.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| |||
|short_description=p3@NT5E | |||
}} |
Revision as of 12:53, 22 January 2014
Short description: | p3@NT5E |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NT5E_5end |
Coexpression cluster: | NA |
Association with transcript: | 87bp_to_ENST00000369647, NM_001204813, NM_002526, uc003pkn.2, uc003pko.3, uc010kbr.2_5end |
EntrezGene: | NT5E |
HGNC: | 8021 |
UniProt: | E9PGM0B3KQI8P21589Q6NZX3Q96B60 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.64e-18 | 76 |
muscle precursor cell | 7.78e-18 | 58 |
myoblast | 7.78e-18 | 58 |
multi-potent skeletal muscle stem cell | 7.78e-18 | 58 |
smooth muscle cell | 6.62e-17 | 43 |
smooth muscle myoblast | 6.62e-17 | 43 |
muscle cell | 1.99e-16 | 55 |
vascular associated smooth muscle cell | 5.70e-16 | 32 |
electrically responsive cell | 9.42e-13 | 61 |
electrically active cell | 9.42e-13 | 61 |
somatic stem cell | 5.39e-09 | 433 |
multi fate stem cell | 8.68e-09 | 427 |
mesodermal cell | 9.46e-09 | 121 |
skin fibroblast | 1.36e-08 | 23 |
stromal cell | 2.72e-08 | 28 |
embryonic cell | 5.57e-08 | 250 |
stem cell | 1.25e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 2.72e-22 | 83 |
dense mesenchyme tissue | 2.68e-20 | 73 |
somite | 4.78e-20 | 71 |
presomitic mesoderm | 4.78e-20 | 71 |
presumptive segmental plate | 4.78e-20 | 71 |
dermomyotome | 4.78e-20 | 71 |
trunk paraxial mesoderm | 4.78e-20 | 71 |
paraxial mesoderm | 8.13e-20 | 72 |
presumptive paraxial mesoderm | 8.13e-20 | 72 |
epithelial vesicle | 1.80e-19 | 78 |
skeletal muscle tissue | 7.28e-16 | 62 |
striated muscle tissue | 7.28e-16 | 62 |
myotome | 7.28e-16 | 62 |
muscle tissue | 8.27e-16 | 64 |
musculature | 8.27e-16 | 64 |
musculature of body | 8.27e-16 | 64 |
surface structure | 6.50e-13 | 99 |
trunk mesenchyme | 1.86e-12 | 122 |
mesenchyme | 2.32e-11 | 160 |
entire embryonic mesenchyme | 2.32e-11 | 160 |
integument | 2.74e-10 | 46 |
integumental system | 2.74e-10 | 46 |
artery | 7.41e-10 | 42 |
arterial blood vessel | 7.41e-10 | 42 |
arterial system | 7.41e-10 | 42 |
unilaminar epithelium | 1.91e-09 | 148 |
skin of body | 1.19e-08 | 41 |
systemic artery | 2.58e-08 | 33 |
systemic arterial system | 2.58e-08 | 33 |
trunk | 1.76e-07 | 199 |
vasculature | 6.67e-07 | 78 |
vascular system | 6.67e-07 | 78 |
subdivision of skeletal system | 9.68e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.19e-07 | 14 |