FFCP PHASE1:Hg19::chr7:99517131..99517162,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89122 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16275 | |||
|TSSclassifier=strong | |||
|UniProt=Q9C037,B4DEC5 | |||
|association_with_transcript=0bp_to_ENST00000355947,ENST00000542799,uc003usd.2,uc003use.2,uc003usf.2,uc011kjc.1_5end | |||
|description=CAGE_peak_1_at_TRIM4_5end | |||
|id=chr7:99517131..99517162,- | |||
|ontology_enrichment_celltype=CL:0002087!6.83e-31!119;CL:0000738!2.40e-30!140;CL:0002031!6.76e-30!124;CL:0000037!1.13e-22!172;CL:0000566!1.13e-22!172;CL:0002032!8.46e-21!165;CL:0000837!8.46e-21!165;CL:0000988!9.25e-21!182;CL:0002057!1.44e-16!42;CL:0000838!2.79e-16!52;CL:0000542!5.68e-16!53;CL:0000051!5.68e-16!53;CL:0000839!7.83e-15!70;CL:0000766!1.07e-14!76;CL:0000557!1.77e-14!71;CL:0000860!4.91e-14!45;CL:0002194!1.62e-13!63;CL:0000576!1.62e-13!63;CL:0000040!1.62e-13!63;CL:0000559!1.62e-13!63;CL:0000791!1.08e-12!18;CL:0000789!1.08e-12!18;CL:0002420!1.08e-12!18;CL:0002419!1.08e-12!18;CL:0000790!1.08e-12!18;CL:0002009!1.60e-12!65;CL:0002320!7.05e-10!365;CL:0000134!1.39e-09!358;CL:0000084!3.79e-09!25;CL:0000827!3.79e-09!25;CL:0000625!2.67e-08!11;CL:0000763!1.22e-07!112;CL:0000049!1.22e-07!112;CL:0000219!2.21e-07!390;CL:0000945!5.01e-07!24;CL:0000826!5.01e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.03e-12;18!CL:0000789;1.03e-12;18!CL:0002419;1.03e-12;18!CL:0000860;4.05e-12;33!CL:0002057;4.05e-12;33!CL:0000576;4.43e-11;48!CL:0002087;9.59e-11;104!CL:0000473;5.72e-10;39!CL:0000234;5.72e-10;39!CL:0000542;6.96e-10;53!CL:0000084;4.52e-09;25!CL:0000766;2.00e-08;69!CL:0000625;2.59e-08;11!CL:0000738;1.91e-07;136!CL:0000945;4.42e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,4.24e-34,115;CL:0000738,3.38e-33,136;CL:0002031,5.96e-33,120;CL:0000037,9.23e-25,168;CL:0000988,4.82e-23,177;CL:0002032,7.95e-23,161;CL:0000837,7.95e-23,161;CL:0000839,1.24e-17,66;CL:0000766,2.48e-17,72;CL:0000557,3.29e-17,67;CL:0000860,1.44e-16,42;CL:0002057,1.44e-16,42;CL:0002194,2.42e-16,59;CL:0000576,2.42e-16,59;CL:0000040,2.42e-16,59;CL:0000559,2.42e-16,59;CL:0000838,2.79e-16,52;CL:0000473,3.09e-16,48;CL:0000234,3.09e-16,48;CL:0000542,5.68e-16,53;CL:0000051,5.68e-16,53;CL:0002009,3.79e-15,61;CL:0000791,1.08e-12,18;CL:0000789,1.08e-12,18;CL:0002420,1.08e-12,18;CL:0002419,1.08e-12,18;CL:0000790,1.08e-12,18;CL:0002320,1.25e-10,361;CL:0000134,2.51e-10,354;CL:0000084,3.79e-09,25;CL:0000827,3.79e-09,25;CL:0000763,5.66e-09,108;CL:0000049,5.66e-09,108;CL:0000625,2.67e-08,11;CL:0000219,5.31e-08,386;CL:0000945,5.01e-07,24;CL:0000826,5.01e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000790;1.03e-12;18!CL:0002057;4.73e-12;42!CL:0000051;6.96e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.69e-17!102;UBERON:0003061!1.69e-17!102;UBERON:0002193!3.72e-17!112;UBERON:0002371!9.71e-13!80;UBERON:0002405!3.36e-12!115;UBERON:0001474!1.20e-11!86;UBERON:0004765!2.93e-09!101;UBERON:0001434!2.93e-09!101;UBERON:0002384!9.65e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.16e-20,98;UBERON:0003061,6.16e-20,98;UBERON:0002193,2.00e-19,108;UBERON:0002405,2.47e-16,93;UBERON:0002371,4.74e-15,76;UBERON:0001474,1.01e-13,82;UBERON:0004765,2.96e-12,90;UBERON:0001434,7.33e-11,100;UBERON:0002384,1.95e-09,371 | |||
|phase1_expression=13.8075568245623,11.7755288140041,13.8135316014052,13.009528785907,12.5149106439641,20.9361245784089,7.59899634504932,13.8978372153903,26.6409340763835,6.88055022204225,4.18680700783456,19.4412821195853,19.2549894106771,12.2528689430446,13.9186897805725,13.4465029290355,12.6565850885035,18.2577522596843,6.8310591830671,11.3271373430645,12.0360407834109,12.5381888591235,11.4494394852423,10.2655818804663,8.16027157366218,14.6713739036066,13.0539937225414,13.2234112606981,15.7345710739562,19.9591287010551,15.7912445782398,8.27479102031034,9.93979531968225,13.3111443660044,24.1697665810541,20.7567079431635,15.5608232847469,19.9438347071476,23.4637003540066,20.8330435887218,25.0785331148715,27.2070679455943,27.3030101692238,22.6821252496121,23.4283085087062,23.2880698740304,25.5671940596253,25.4924090573532,19.5115013663915,20.4261598548727,28.4338384247302,20.3374717704183,22.0637235671436,24.5284179761854,18.9597081232078,24.0950194614534,24.2886473551483,19.3262196622773,21.1197885735923,26.9580382743919,28.1308335351578,15.1731598085889,19.3479747892983,23.8685860298309,24.3775760448011,35.7452691555418,37.3693349397345,23.6173745341339,25.0311800841697,16.9407298869991,21.7943820948013,31.303599058943,27.5322277073569,24.5056132121852,22.7486600962597,19.2885953867706,21.3424399178341,23.8781259617995,21.3765030307117,32.2064400427611,27.6494181306735,29.9569212174,42.2390986707174,27.3069305631066,29.3538053774973,28.590924911956,30.830491001773,26.4386122379062,37.6795577487371,23.8513438633841,32.4451392392386,22.3150131960957,32.1109511625192,27.7559790015954,15.694239763483,14.7495087474043,36.7847270112868,34.1919363591773,39.6810893069053,28.7560772071966,68.1177537264204,74.3313055003531,74.0341567950063,26.292867824901,40.0664034165779,37.8822959737992,33.0380713793319,19.8541545574796,21.8499703900595,20.0614243616485,20.1735512983669,24.3434592017444,59.1663387016621,59.1265230078266,55.4038276166377,22.5485591968157,41.0045928154056,47.4205874766029,31.8804811944574,45.2362888340217,46.2269252238057,36.1171776890382,42.1610333417764,41.2116887917227,46.224368824368,34.0959242943384,43.5197838368155,36.2892137804518,29.9533019277528,36.0612765668169,21.9426179682566,13.4140171940727,13.0419813080401,14.0961269429981,23.0615438892509,13.9052658202391,14.3151470469198,21.8985691636186,8.88627281342238,9.53436409089025,6.67544371267758,14.9971041444881,10.5645633604837,12.6066710546706,22.0692227685185,20.3731792640143,17.1515769069336,19.3177405687327,19.4478269665243,21.1730775757852,8.14925870203491,9.46258054616737,10.4142150482278,13.5673906061762,10.4874859052476,4.95212475492121,10.2407533603037,14.4713385134824,12.4518191940349,10.0416183829401,14.9046847330384,11.4040815857777,8.7862340717341,8.45625084795498,9.72170337458112,8.3941744587035,6.73588117878509,6.41885438754937,7.66583187329416,4.74632829784064,7.69447324507711,5.27121669744253,23.2668158488995,18.752044242129,9.93943903390637,9.11739683984974,10.9899620074972,18.6443803486729,13.1227301413392,13.4562624034154,7.47242970107935,8.38669664618344,14.626918663789,14.1446205673172,9.31732847746715,14.8330279092033,14.404398112,8.90421440968427,12.7985631500431,9.69802096625564,18.2327390273197,7.63324241184472,9.2267578289835,9.5506548557529,17.7614128991757,7.12439040408254,21.0784593598562,11.8800285728205,13.8469480395992,20.0235499626366,18.6840716872222,10.100166837244,10.0094815897571,7.20366700258876,11.8523957637826,10.4205850571667,15.4745200673795,5.78504134116107,14.8893397621755,14.5219024396626,12.080118366095,16.8051013807265,12.3663035086127,21.6418053638328,15.8199327881851,11.4767905924061,10.0360115316035,23.4763410047026,17.7656304379638,19.3975268182574,16.3304412557643,11.485739197951,7.79978724628243,9.08326009867495,6.81865301477087,9.46455164783713,0,0,0,0,0,0,7.8224766164908,13.5080597020506,13.8134921352481,24.6115001856949,25.9876613401051,4.37735160147422,2.69735504124963,3.37415441836875,3.639701100169,4.35758888184812,3.55905928666645,4.58426447744559,3.53198637225623,4.61696588335668,7.38155454624648,8.41450642820675,10.7009242946164,16.1709582524096,11.4079531339648,14.7424082501644,18.9052770138049,11.9195036841956,14.5126357480874,8.57839051492628,9.54827483055042,19.1082980537953,9.04760751704678,13.2401476576697,12.054907296482,16.6389565644733,7.21656710126366,17.3895607462615,12.6801389774687,8.51762041790336,7.87075371380238,12.5567740474835,11.8530659693891,15.4527509177077,19.4511434809044,9.12616634043027,14.1199604174292,12.185398418281,7.72717789714754,5.10390350072591,14.3293636324557,13.9504290486702,7.28427090413901,29.5597942737566,19.1065101808701,29.8552486378712,29.5445904504771,38.6301846284723,11.1756293954218,10.6956759156318,31.6487107467127,18.8179690624976,8.02054443085923,13.5154376029763,20.0078502841405,8.97048674762886,14.3866822714982,4.6936502925408,11.5051827024422,28.6125156681506,5.071816515336,15.1584726453376,11.4408180602503,10.0310875962235,5.6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| |||
|short_description=p1@TRIM4 | |||
}} |
Revision as of 18:12, 22 January 2014
Short description: | p1@TRIM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000355947, ENST00000542799, uc003usd.2, uc003use.2, uc003usf.2, uc011kjc.1_5end |
EntrezGene: | TRIM4 |
HGNC: | 16275 |
UniProt: | Q9C037B4DEC5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.16e-20 | 98 |
blood island | 6.16e-20 | 98 |
hemolymphoid system | 2.00e-19 | 108 |
immune system | 2.47e-16 | 93 |
bone marrow | 4.74e-15 | 76 |
bone element | 1.01e-13 | 82 |
skeletal element | 2.96e-12 | 90 |
skeletal system | 7.33e-11 | 100 |
connective tissue | 1.95e-09 | 371 |