FFCP PHASE1:Mm9::chr10:112366030..112366070,-: Difference between revisions
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{{FFCP|EntrezGene=382423|HGNC=|UniProt=|association_with_transcript=0bp_to_ENSMUST00000165438_5end|description=CAGE_peak_1_at_Atxn7l3b_5end|id=chr10:112366030..112366070,-|ontology_enrichment_celltype=CL:0000117!4.08e-12!23;CL:0000337!4.08e-12!23;CL:0000540!6.19e-07!33;CL:0000047!6.19e-07!33;CL:0000031!6.19e-07!33;CL:0000404!6.19e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.08e-12,23;CL:0000337,4.08e-12,23;CL:0000540,6.19e-07,33;CL:0000047,6.19e-07,33;CL:0000031,6.19e-07,33;CL:0000404,6.19e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!6.50e-19!52;UBERON:0005068!6.50e-19!52;UBERON:0006241!6.50e-19!52;UBERON:0007135!6.50e-19!52;UBERON:0000033!3.36e-17!63;UBERON:0003056!5.63e-17!49;UBERON:0002346!2.40e-16!71;UBERON:0003075!2.40e-16!71;UBERON:0007284!2.40e-16!71;UBERON:0000955!6.03e-16!50;UBERON:0006238!6.03e-16!50;UBERON:0001017!6.24e-16!73;UBERON:0005743!6.24e-16!73;UBERON:0002616!1.01e-15!49;UBERON:0002020!3.50e-15!34;UBERON:0003080!3.89e-15!40;UBERON:0002780!4.84e-15!39;UBERON:0001890!4.84e-15!39;UBERON:0006240!4.84e-15!39;UBERON:0000073!9.12e-15!75;UBERON:0001016!9.12e-15!75;UBERON:0004121!1.89e-12!102;UBERON:0000924!1.89e-12!102;UBERON:0006601!1.89e-12!102;UBERON:0002791!5.14e-12!29;UBERON:0003528!5.14e-12!29;UBERON:0001893!5.14e-12!29;UBERON:0000153!6.13e-09!94;UBERON:0000956!6.36e-09!21;UBERON:0001869!6.36e-09!21;UBERON:0000203!6.36e-09!21;UBERON:0007811!9.67e-08!86;UBERON:0002619!4.58e-07!17;UBERON:0000025!5.73e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.23e-19,54;UBERON:0001049,6.50e-19,52;UBERON:0005068,6.50e-19,52;UBERON:0006241,6.50e-19,52;UBERON:0007135,6.50e-19,52;UBERON:0002346,1.25e-18,64;UBERON:0003075,1.25e-18,64;UBERON:0007284,1.25e-18,64;UBERON:0003056,5.63e-17,49;UBERON:0010371,1.29e-16,73;UBERON:0001017,6.24e-16,73;UBERON:0000955,8.21e-16,47;UBERON:0006238,8.21e-16,47;UBERON:0002616,1.36e-15,46;UBERON:0002020,3.50e-15,34;UBERON:0003080,3.89e-15,40;UBERON:0002780,4.84e-15,39;UBERON:0001890,4.84e-15,39;UBERON:0006240,4.84e-15,39;UBERON:0001016,9.12e-15,75;UBERON:0004121,1.00e-13,95;UBERON:0000924,1.00e-13,95;UBERON:0006601,1.00e-13,95;UBERON:0003528,5.14e-12,29;UBERON:0002791,5.14e-12,29;UBERON:0001893,5.14e-12,29;UBERON:0000956,6.36e-09,21;UBERON:0001869,6.36e-09,21;UBERON:0000203,6.36e-09,21;UBERON:0010314,7.63e-09,92;UBERON:0002619,4.58e-07,17;UBERON:0000025,5.73e-07,114|phase1_expression=112.264341820461,152.502253138401,153.789742913663,156.373997245631,173.810818291382,68.6626222119629,63.3090256013875,27.115897922731,17.73937899111,19.4273556847255,28.4221827254338,31.3504584851672,35.2673503658284,37.5033526377499,28.3143297543313,23.4871310172198,29.3815988813822,32.6503341145776,37.1580115071552,36.4975100546306,60.5508225875617,47.4610746740232,38.9187685817014,57.5972722056264,56.664092423591,95.8967380072084,81.8447792702242,70.0281506229139,79.9998595911334,98.291750606373,37.9159173220571,12.065582795733,12.916360539276,15.8481681015439,56.3260658514985,50.0366282529062,54.7173874783149,71.1503772252743,57.8188154947612,63.8698967648034,79.9994823722179,88.1128675596395,66.514918365268,86.4911139492216,79.3781371448799,80.5770241989782,71.1976123356716,69.7680500417429,68.9814613786242,56.7735305296908,49.8351660986291,67.5637052515366,30.3686516964503,20.3101399763176,29.5762543245368,48.622033410794,42.9800159908135,50.5358650431893,201.10256209444,216.886301501533,154.654862455508,63.3639274969277,44.464739805557,56.6936821887281,25.7105254267413,46.1812074714965,66.8108246456043,82.6069356441342,155.119660013483,176.182749522856,153.326896825157,209.953473536796,200.548635184065,155.440824203777,185.365140949269,113.063910753033,56.1590993096882,95.1270668734648,96.6185094181771,213.128240971993,244.820934280048,227.118229562747,100.505879640497,72.5963766940867,90.6093609316484,130.225834779361,172.554477128513,202.056999274626,47.0259660599073,43.0757892608677,65.5093744465792,64.531790773604,37.3984233539263,69.6217117212784,74.0745115890343,71.6843019355737,57.3013234137548,89.4759193534803,77.4162293716549,77.0280272432542,102.815696436977,146.292184252322,152.883143823987,127.9920065676,25.1129607573008,23.8158273546593,28.3093689208279,66.2266502370548,22.2686579936568,34.4385762630393,77.5479410644627,61.8064920973647,65.7254167179767,70.8396410597326,54.0908052824242,54.6649672284088,55.3716727724997,43.0906083621337,38.9228642857945,56.133096931751,28.4885558813908,39.274895503953,29.8226817948995,70.2673912827713,105.980033647608,72.54980367924,40.1380667094833,31.1949420116572,39.5188406197231,79.0894576057464,75.4875994650734,171.51819063406,81.1759575297931,131.18202961046,84.9853102248601,100.265100575874,104.589026674275,38.6905678597389,44.7319282427604,67.3413938836717,103.315631712387,93.5701565044235,103.175600378465,100.821523132093,87.6310109069103,92.6262197659464,86.6740952177492,68.0389865043611,112.957628296809,95.3094644045809,111.904914968271,113.32419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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:382423 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000165438_5end | |||
|cluster_id=chr10:112366030..112366070,- | |||
|description=CAGE_peak_1_at_Atxn7l3b_5end | |||
|id=chr10:112366030..112366070,- | |||
|ontology_enrichment_celltype=CL:0000117!4.08e-12!23;CL:0000337!4.08e-12!23;CL:0000540!6.19e-07!33;CL:0000047!6.19e-07!33;CL:0000031!6.19e-07!33;CL:0000404!6.19e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.08e-12,23;CL:0000337,4.08e-12,23;CL:0000540,6.19e-07,33;CL:0000047,6.19e-07,33;CL:0000031,6.19e-07,33;CL:0000404,6.19e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.50e-19!52;UBERON:0005068!6.50e-19!52;UBERON:0006241!6.50e-19!52;UBERON:0007135!6.50e-19!52;UBERON:0000033!3.36e-17!63;UBERON:0003056!5.63e-17!49;UBERON:0002346!2.40e-16!71;UBERON:0003075!2.40e-16!71;UBERON:0007284!2.40e-16!71;UBERON:0000955!6.03e-16!50;UBERON:0006238!6.03e-16!50;UBERON:0001017!6.24e-16!73;UBERON:0005743!6.24e-16!73;UBERON:0002616!1.01e-15!49;UBERON:0002020!3.50e-15!34;UBERON:0003080!3.89e-15!40;UBERON:0002780!4.84e-15!39;UBERON:0001890!4.84e-15!39;UBERON:0006240!4.84e-15!39;UBERON:0000073!9.12e-15!75;UBERON:0001016!9.12e-15!75;UBERON:0004121!1.89e-12!102;UBERON:0000924!1.89e-12!102;UBERON:0006601!1.89e-12!102;UBERON:0002791!5.14e-12!29;UBERON:0003528!5.14e-12!29;UBERON:0001893!5.14e-12!29;UBERON:0000153!6.13e-09!94;UBERON:0000956!6.36e-09!21;UBERON:0001869!6.36e-09!21;UBERON:0000203!6.36e-09!21;UBERON:0007811!9.67e-08!86;UBERON:0002619!4.58e-07!17;UBERON:0000025!5.73e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.23e-19,54;UBERON:0001049,6.50e-19,52;UBERON:0005068,6.50e-19,52;UBERON:0006241,6.50e-19,52;UBERON:0007135,6.50e-19,52;UBERON:0002346,1.25e-18,64;UBERON:0003075,1.25e-18,64;UBERON:0007284,1.25e-18,64;UBERON:0003056,5.63e-17,49;UBERON:0010371,1.29e-16,73;UBERON:0001017,6.24e-16,73;UBERON:0000955,8.21e-16,47;UBERON:0006238,8.21e-16,47;UBERON:0002616,1.36e-15,46;UBERON:0002020,3.50e-15,34;UBERON:0003080,3.89e-15,40;UBERON:0002780,4.84e-15,39;UBERON:0001890,4.84e-15,39;UBERON:0006240,4.84e-15,39;UBERON:0001016,9.12e-15,75;UBERON:0004121,1.00e-13,95;UBERON:0000924,1.00e-13,95;UBERON:0006601,1.00e-13,95;UBERON:0003528,5.14e-12,29;UBERON:0002791,5.14e-12,29;UBERON:0001893,5.14e-12,29;UBERON:0000956,6.36e-09,21;UBERON:0001869,6.36e-09,21;UBERON:0000203,6.36e-09,21;UBERON:0010314,7.63e-09,92;UBERON:0002619,4.58e-07,17;UBERON:0000025,5.73e-07,114 | |||
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| |||
|short_description=p1@Atxn7l3b | |||
}} |
Revision as of 21:21, 3 August 2015
Short description: | p1@Atxn7l3b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Atxn7l3b_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000165438_5end |
EntrezGene: | 382423 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.08e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.08e-12 | 23 |
neuron | 6.19e-07 | 33 |
neuronal stem cell | 6.19e-07 | 33 |
neuroblast | 6.19e-07 | 33 |
electrically signaling cell | 6.19e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.23e-19 | 54 |
neural tube | 6.50e-19 | 52 |
neural rod | 6.50e-19 | 52 |
future spinal cord | 6.50e-19 | 52 |
neural keel | 6.50e-19 | 52 |
neurectoderm | 1.25e-18 | 64 |
neural plate | 1.25e-18 | 64 |
presumptive neural plate | 1.25e-18 | 64 |
pre-chordal neural plate | 5.63e-17 | 49 |
ecto-epithelium | 1.29e-16 | 73 |
central nervous system | 6.24e-16 | 73 |
brain | 8.21e-16 | 47 |
future brain | 8.21e-16 | 47 |
regional part of brain | 1.36e-15 | 46 |
gray matter | 3.50e-15 | 34 |
anterior neural tube | 3.89e-15 | 40 |
regional part of forebrain | 4.84e-15 | 39 |
forebrain | 4.84e-15 | 39 |
future forebrain | 4.84e-15 | 39 |
nervous system | 9.12e-15 | 75 |
ectoderm-derived structure | 1.00e-13 | 95 |
ectoderm | 1.00e-13 | 95 |
presumptive ectoderm | 1.00e-13 | 95 |
brain grey matter | 5.14e-12 | 29 |
regional part of telencephalon | 5.14e-12 | 29 |
telencephalon | 5.14e-12 | 29 |
cerebral cortex | 6.36e-09 | 21 |
cerebral hemisphere | 6.36e-09 | 21 |
pallium | 6.36e-09 | 21 |
structure with developmental contribution from neural crest | 7.63e-09 | 92 |
regional part of cerebral cortex | 4.58e-07 | 17 |
tube | 5.73e-07 | 114 |