FFCP PHASE1:Mm9::chr2:132078963..132078972,-: Difference between revisions
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{{FFCP|EntrezGene=18538|HGNC=|UniProt=E9Q7Z3,P17918,Q542J9|association_with_transcript=-47bp_to_ENSMUST00000169856,NM_011045,uc008mml.1_5end|description=CAGE_peak_2_at_Pcna_5end|id=chr2:132078963..132078972,-|ontology_enrichment_celltype=CL:0000117!5.81e-11!23;CL:0000337!5.81e-11!23;CL:0000540!6.62e-07!33;CL:0000047!6.62e-07!33;CL:0000031!6.62e-07!33;CL:0000404!6.62e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.51e-11,23;CL:0000337,2.51e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!3.49e-15!34;UBERON:0001049!5.36e-15!52;UBERON:0005068!5.36e-15!52;UBERON:0006241!5.36e-15!52;UBERON:0007135!5.36e-15!52;UBERON:0000073!3.71e-13!75;UBERON:0001016!3.71e-13!75;UBERON:0003080!5.46e-13!40;UBERON:0002346!6.08e-13!71;UBERON:0003075!6.08e-13!71;UBERON:0007284!6.08e-13!71;UBERON:0001017!7.41e-13!73;UBERON:0005743!7.41e-13!73;UBERON:0002780!1.36e-12!39;UBERON:0001890!1.36e-12!39;UBERON:0006240!1.36e-12!39;UBERON:0000955!1.43e-12!50;UBERON:0006238!1.43e-12!50;UBERON:0002791!2.78e-12!29;UBERON:0003528!2.78e-12!29;UBERON:0001893!2.78e-12!29;UBERON:0002616!5.58e-12!49;UBERON:0003056!1.25e-10!49;UBERON:0000033!2.09e-10!63;UBERON:0004121!4.61e-10!102;UBERON:0000924!4.61e-10!102;UBERON:0006601!4.61e-10!102;UBERON:0000956!1.15e-08!21;UBERON:0001869!1.15e-08!21;UBERON:0000203!1.15e-08!21;UBERON:0002619!1.99e-07!17;UBERON:0000025!2.39e-07!114;UBERON:0004111!3.21e-07!122;UBERON:0007811!7.59e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.93e-15,34;UBERON:0001049,9.09e-15,52;UBERON:0005068,9.09e-15,52;UBERON:0006241,9.09e-15,52;UBERON:0007135,9.09e-15,52;UBERON:0000073,1.79e-14,54;UBERON:0003080,5.76e-13,40;UBERON:0001016,6.57e-13,75;UBERON:0002346,8.49e-13,64;UBERON:0003075,8.49e-13,64;UBERON:0007284,8.49e-13,64;UBERON:0001017,1.34e-12,73;UBERON:0002780,1.47e-12,39;UBERON:0001890,1.47e-12,39;UBERON:0006240,1.47e-12,39;UBERON:0003528,1.94e-12,29;UBERON:0002791,1.94e-12,29;UBERON:0001893,1.94e-12,29;UBERON:0000955,5.26e-12,47;UBERON:0006238,5.26e-12,47;UBERON:0002616,2.11e-11,46;UBERON:0010314,3.23e-11,92;UBERON:0003056,1.81e-10,49;UBERON:0010371,1.52e-09,73;UBERON:0004121,3.31e-09,95;UBERON:0000924,3.31e-09,95;UBERON:0006601,3.31e-09,95;UBERON:0000956,1.07e-08,21;UBERON:0001869,1.07e-08,21;UBERON:0000203,1.07e-08,21;UBERON:0002619,2.08e-07,17;UBERON:0000025,5.80e-07,114|phase1_expression=0.960893082628764,0.348975407639361,0,0,0,0.839396359559449,0.233612640595526,1.29123323441576,0.563154888606667,1.63845168425395,2.05461561870606,2.15384829287408,0.856003649656029,1.48614684112296,2.33176833270964,2.42970320867791,3.49780939064073,1.26184866143295,1.23402990245165,1.69755860719212,1.7008658030214,1.19149141441062,1.56719873483361,1.27993938234725,0.91763712426868,0.57423196411502,1.29228598847722,0.430942465371778,0.570070258369122,0.756090389279792,1.55211357458713,0.635030673459631,0.61506478758457,0,2.59966457776147,1.32987716286794,1.83752420636132,1.25559489221072,0,1.0470474879476,0,0,0,1.38486499773135,0.912392380975631,1.10128051297009,0.782391344348039,1.74420125104357,0.878744730937887,2.13872888981712,2.37976916763116,0,1.17447824240415,0.725362142011344,0.672187598284928,1.02903774414379,0.85960031981627,0.515672092277442,3.23706337375356,2.64495489636016,4.43681982454325,2.37191172448392,2.66788438833342,0.449949858640699,0,0.7104801149461,1.19840044207362,0.384218305321555,1.65903379693564,2.29510095163874,3.36519938162211,3.42781181284564,4.19650227808066,2.81728838194394,2.39613677545591,5.51531271966013,1.10115880999389,2.42605942361857,1.99688493233117,3.16527090552465,2.56165402086747,3.12548022334056,2.23346399201105,3.37657566019008,2.44477196442896,3.24091444021034,2.98980529678116,2.60959224155421,1.66597625333005,1.88928900266964,0.579728977403356,0,0.679971333707751,0.539703191637817,0.649776417447669,0.448026887097336,1.82577746171277,0.681721290312231,1.81850203222008,1.06001872353102,1.12674735821344,0,0,0,1.94841936910093,2.28023878927589,3.53867111510348,0.68510327831436,0.776813650941515,2.3750742250372,1.38788261412909,1.52232739156071,0.691846491768175,1.20578112442098,1.41106448562846,2.26199864393416,0.741584903203122,1.15679485535929,1.76922110389975,2.42650274921114,1.54589062922275,1.45462575940567,0,1.75668478206928,0.83778682725382,1.02182822083437,0.718890747035522,2.39961092397363,0.508280908292259,2.39665023047716,2.74500361691176,2.1361239859187,2.43354048269187,2.30143911597297,3.32460871295296,1.62241263067758,2.44414473240759,1.61729061793121,3.79084137650512,1.26265113531884,1.30120442962704,1.83921683546778,1.80062129805349,1.05493372485001,1.08858398642125,0.896796041993948,1.40552586839593,0.517406741478031,1.29340795759705,1.51284864134255,1.23165786914764,2.19195732427575,0.556094498451196,1.0447564995665,1.02891068203972,1.59227413454795,0.702213187313235,2.05878325691772,1.42081749697796,1.86413195281952,1.87620847984877,2.34080679899319,1.42046841351126,0.787056926989615,0.925602677324269,3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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18538 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q7Z3,uniprot:P17918,uniprot:Q542J9 | |||
|association_with_transcript=-47bp_to_ENSMUST00000169856,NM_011045,uc008mml.1_5end | |||
|cluster_id=chr2:132078963..132078972,- | |||
|description=CAGE_peak_2_at_Pcna_5end | |||
|id=chr2:132078963..132078972,- | |||
|ontology_enrichment_celltype=CL:0000117!5.81e-11!23;CL:0000337!5.81e-11!23;CL:0000540!6.62e-07!33;CL:0000047!6.62e-07!33;CL:0000031!6.62e-07!33;CL:0000404!6.62e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.51e-11,23;CL:0000337,2.51e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.49e-15!34;UBERON:0001049!5.36e-15!52;UBERON:0005068!5.36e-15!52;UBERON:0006241!5.36e-15!52;UBERON:0007135!5.36e-15!52;UBERON:0000073!3.71e-13!75;UBERON:0001016!3.71e-13!75;UBERON:0003080!5.46e-13!40;UBERON:0002346!6.08e-13!71;UBERON:0003075!6.08e-13!71;UBERON:0007284!6.08e-13!71;UBERON:0001017!7.41e-13!73;UBERON:0005743!7.41e-13!73;UBERON:0002780!1.36e-12!39;UBERON:0001890!1.36e-12!39;UBERON:0006240!1.36e-12!39;UBERON:0000955!1.43e-12!50;UBERON:0006238!1.43e-12!50;UBERON:0002791!2.78e-12!29;UBERON:0003528!2.78e-12!29;UBERON:0001893!2.78e-12!29;UBERON:0002616!5.58e-12!49;UBERON:0003056!1.25e-10!49;UBERON:0000033!2.09e-10!63;UBERON:0004121!4.61e-10!102;UBERON:0000924!4.61e-10!102;UBERON:0006601!4.61e-10!102;UBERON:0000956!1.15e-08!21;UBERON:0001869!1.15e-08!21;UBERON:0000203!1.15e-08!21;UBERON:0002619!1.99e-07!17;UBERON:0000025!2.39e-07!114;UBERON:0004111!3.21e-07!122;UBERON:0007811!7.59e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.93e-15,34;UBERON:0001049,9.09e-15,52;UBERON:0005068,9.09e-15,52;UBERON:0006241,9.09e-15,52;UBERON:0007135,9.09e-15,52;UBERON:0000073,1.79e-14,54;UBERON:0003080,5.76e-13,40;UBERON:0001016,6.57e-13,75;UBERON:0002346,8.49e-13,64;UBERON:0003075,8.49e-13,64;UBERON:0007284,8.49e-13,64;UBERON:0001017,1.34e-12,73;UBERON:0002780,1.47e-12,39;UBERON:0001890,1.47e-12,39;UBERON:0006240,1.47e-12,39;UBERON:0003528,1.94e-12,29;UBERON:0002791,1.94e-12,29;UBERON:0001893,1.94e-12,29;UBERON:0000955,5.26e-12,47;UBERON:0006238,5.26e-12,47;UBERON:0002616,2.11e-11,46;UBERON:0010314,3.23e-11,92;UBERON:0003056,1.81e-10,49;UBERON:0010371,1.52e-09,73;UBERON:0004121,3.31e-09,95;UBERON:0000924,3.31e-09,95;UBERON:0006601,3.31e-09,95;UBERON:0000956,1.07e-08,21;UBERON:0001869,1.07e-08,21;UBERON:0000203,1.07e-08,21;UBERON:0002619,2.08e-07,17;UBERON:0000025,5.80e-07,114 | |||
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| |||
|short_description=p2@Pcna | |||
}} |
Revision as of 02:36, 4 August 2015
Short description: | p2@Pcna |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pcna_5end |
Coexpression cluster: | NA |
Association with transcript: | -47bp_to_ENSMUST00000169856, NM_011045, uc008mml.1_5end |
EntrezGene: | 18538 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.51e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.51e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
gray matter | 1.93e-15 | 34 |
neural tube | 9.09e-15 | 52 |
neural rod | 9.09e-15 | 52 |
future spinal cord | 9.09e-15 | 52 |
neural keel | 9.09e-15 | 52 |
regional part of nervous system | 1.79e-14 | 54 |
anterior neural tube | 5.76e-13 | 40 |
nervous system | 6.57e-13 | 75 |
neurectoderm | 8.49e-13 | 64 |
neural plate | 8.49e-13 | 64 |
presumptive neural plate | 8.49e-13 | 64 |
central nervous system | 1.34e-12 | 73 |
regional part of forebrain | 1.47e-12 | 39 |
forebrain | 1.47e-12 | 39 |
future forebrain | 1.47e-12 | 39 |
brain grey matter | 1.94e-12 | 29 |
regional part of telencephalon | 1.94e-12 | 29 |
telencephalon | 1.94e-12 | 29 |
brain | 5.26e-12 | 47 |
future brain | 5.26e-12 | 47 |
regional part of brain | 2.11e-11 | 46 |
structure with developmental contribution from neural crest | 3.23e-11 | 92 |
pre-chordal neural plate | 1.81e-10 | 49 |
ecto-epithelium | 1.52e-09 | 73 |
ectoderm-derived structure | 3.31e-09 | 95 |
ectoderm | 3.31e-09 | 95 |
presumptive ectoderm | 3.31e-09 | 95 |
cerebral cortex | 1.07e-08 | 21 |
cerebral hemisphere | 1.07e-08 | 21 |
pallium | 1.07e-08 | 21 |
regional part of cerebral cortex | 2.08e-07 | 17 |
tube | 5.80e-07 | 114 |