FFCP PHASE1:Mm9::chr17:10512613..10512664,-: Difference between revisions
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{{FFCP|EntrezGene=19317|HGNC=|UniProt=Q9QYS9|association_with_transcript=-368bp_to_ENSMUST00000042296_5end|description=CAGE_peak_5_at_Qk_5end|id=chr17:10512613..10512664,-|ontology_enrichment_celltype=CL:0000540!5.03e-14!33;CL:0000047!5.03e-14!33;CL:0000031!5.03e-14!33;CL:0000404!5.03e-14!33;CL:0000221!1.84e-12!44;CL:0000133!1.84e-12!44;CL:0002319!4.64e-12!43;CL:0000393!1.63e-11!39;CL:0000211!1.63e-11!39;CL:0000117!2.57e-11!23;CL:0000337!2.57e-11!23;CL:0000055!1.61e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.92e-14,33;CL:0000047,1.92e-14,33;CL:0000031,1.92e-14,33;CL:0000404,1.92e-14,33;CL:0000221,3.31e-13,44;CL:0000133,3.31e-13,44;CL:0002319,8.69e-13,43;CL:0000393,7.74e-12,39;CL:0000211,7.74e-12,39;CL:0000117,1.04e-11,23;CL:0000337,1.04e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.26e-18!75;UBERON:0001016!1.26e-18!75;UBERON:0001017!3.31e-18!73;UBERON:0005743!3.31e-18!73;UBERON:0004121!3.11e-14!102;UBERON:0000924!3.11e-14!102;UBERON:0006601!3.11e-14!102;UBERON:0001049!2.00e-12!52;UBERON:0005068!2.00e-12!52;UBERON:0006241!2.00e-12!52;UBERON:0007135!2.00e-12!52;UBERON:0002020!1.86e-11!34;UBERON:0000955!3.63e-11!50;UBERON:0006238!3.63e-11!50;UBERON:0002346!3.88e-11!71;UBERON:0003075!3.88e-11!71;UBERON:0007284!3.88e-11!71;UBERON:0000033!1.02e-10!63;UBERON:0002616!1.26e-10!49;UBERON:0003080!2.29e-09!40;UBERON:0002780!2.92e-09!39;UBERON:0001890!2.92e-09!39;UBERON:0006240!2.92e-09!39;UBERON:0003056!4.02e-09!49;UBERON:0002791!9.74e-09!29;UBERON:0003528!9.74e-09!29;UBERON:0001893!9.74e-09!29;UBERON:0000025!2.53e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.28e-19,75;UBERON:0001017,3.49e-19,73;UBERON:0004121,7.56e-16,95;UBERON:0000924,7.56e-16,95;UBERON:0006601,7.56e-16,95;UBERON:0010314,1.81e-15,92;UBERON:0000073,6.46e-14,54;UBERON:0002346,1.30e-13,64;UBERON:0003075,1.30e-13,64;UBERON:0007284,1.30e-13,64;UBERON:0001049,4.90e-13,52;UBERON:0005068,4.90e-13,52;UBERON:0006241,4.90e-13,52;UBERON:0007135,4.90e-13,52;UBERON:0002020,7.46e-12,34;UBERON:0000955,1.63e-10,47;UBERON:0006238,1.63e-10,47;UBERON:0002616,5.77e-10,46;UBERON:0010371,9.10e-10,73;UBERON:0003080,1.11e-09,40;UBERON:0002780,1.43e-09,39;UBERON:0001890,1.43e-09,39;UBERON:0006240,1.43e-09,39;UBERON:0003056,2.00e-09,49;UBERON:0003528,5.01e-09,29;UBERON:0002791,5.01e-09,29;UBERON:0001893,5.01e-09,29;UBERON:0000025,3.37e-07,114|phase1_expression=0.480446541314382,0,0,0,0,0,0,1.16210991097419,1.97104211012333,3.5109678948299,1.36974374580404,1.51567102091139,1.19840510951844,0.874204024189974,0.666219523631325,1.21485160433896,0,1.41957974411207,1.91960207048034,0,4.59233766815777,0.695036658406197,0,0,0.22940928106717,0,0,0,0,0.252030129759931,0,2.54012269383853,0.61506478758457,0,0,0,0,0.418531630736908,0,0,0,0,0,2.01434908760924,1.72340783073175,1.65192076945513,0,3.48840250208714,1.09843091367236,1.74986909166855,1.81982348112971,0,1.34226084846189,1.45072428402269,1.34437519656986,0.771778308107841,1.71920063963254,0,4.04632921719196,3.1739458756322,5.70448263155561,1.0165335962074,0,0.899899717281399,0.988866362566974,0,1.79760066311043,5.76327457982332,4.45865332926454,7.2903206699113,4.6271491497304,5.42736870367227,4.63823935998388,5.87955836231779,5.46319184803947,4.5960939330501,3.30347642998166,4.34136949489638,5.37622866396852,5.80299666012853,3.93396867490361,6.77187381723788,2.79182999001381,2.8138130501584,2.44477196442896,7.66034322231536,7.83044244395066,5.59198337475902,2.80186915332781,2.56943304363071,0.579728977403356,0,0,0.539703191637817,0,0,2.24711072210803,1.1930122580464,1.03914401841148,2.12003744706204,4.08445917352373,0,0,0,0,0.253359865475099,1.01104889002957,1.48439043634778,0,1.63286352971307,1.90833859442749,0.913396434936424,0.922461989024234,1.50722640552623,1.05829836422134,0.376999773989026,2.47194967734374,1.01219549843938,2.65383165584962,2.42650274921114,3.3126227769059,2.42437626567611,0,3.22058876712702,1.25668024088073,0,0,0,0.127070227073065,2.39665023047716,3.20250421973039,4.39790232395025,2.78118912307642,2.55715457330331,4.1557608911912,2.27137768294861,1.73126918545538,0.497627882440372,0,1.89397670297827,1.69156575851515,1.37941262660084,3.42118046630164,1.80845781402858,2.04109497453984,2.17793324484245,1.96773621575431,1.55222022443409,3.66465587985832,5.48407632486676,3.16712023495108,3.72632745126877,2.22437799380478,2.089512999133,1.4404749548556,3.38358253591438,0,0,0.568326998791185,6.62802472113606,5.8631514995274,4.8616756594474,7.33908680314152,6.09969118416952,3.70241070929708,4.18561100550734,7.24338183778972,0.817357396570186,2.30383789878873,4.92502392237286,3.24275238183423,5.99419948443863,3.29325172936576,2.95254121272818,3.78521907415429,2.05809224758569,0,0,2.55945900642281,0.928946687441754,1.15980715189884,1.81515172161008,0.889512175379481,0.951128130562796,0.949058123089023,0.329397909448022,0.251335208800269,0.198956472041151,0.19496408711912,0.898819408654221,0.216138049874694,0.597423819763102,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:19317 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9QYS9 | |||
|association_with_transcript=-368bp_to_ENSMUST00000042296_5end | |||
|cluster_id=chr17:10512613..10512664,- | |||
|description=CAGE_peak_5_at_Qk_5end | |||
|id=chr17:10512613..10512664,- | |||
|ontology_enrichment_celltype=CL:0000540!5.03e-14!33;CL:0000047!5.03e-14!33;CL:0000031!5.03e-14!33;CL:0000404!5.03e-14!33;CL:0000221!1.84e-12!44;CL:0000133!1.84e-12!44;CL:0002319!4.64e-12!43;CL:0000393!1.63e-11!39;CL:0000211!1.63e-11!39;CL:0000117!2.57e-11!23;CL:0000337!2.57e-11!23;CL:0000055!1.61e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.92e-14,33;CL:0000047,1.92e-14,33;CL:0000031,1.92e-14,33;CL:0000404,1.92e-14,33;CL:0000221,3.31e-13,44;CL:0000133,3.31e-13,44;CL:0002319,8.69e-13,43;CL:0000393,7.74e-12,39;CL:0000211,7.74e-12,39;CL:0000117,1.04e-11,23;CL:0000337,1.04e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.26e-18!75;UBERON:0001016!1.26e-18!75;UBERON:0001017!3.31e-18!73;UBERON:0005743!3.31e-18!73;UBERON:0004121!3.11e-14!102;UBERON:0000924!3.11e-14!102;UBERON:0006601!3.11e-14!102;UBERON:0001049!2.00e-12!52;UBERON:0005068!2.00e-12!52;UBERON:0006241!2.00e-12!52;UBERON:0007135!2.00e-12!52;UBERON:0002020!1.86e-11!34;UBERON:0000955!3.63e-11!50;UBERON:0006238!3.63e-11!50;UBERON:0002346!3.88e-11!71;UBERON:0003075!3.88e-11!71;UBERON:0007284!3.88e-11!71;UBERON:0000033!1.02e-10!63;UBERON:0002616!1.26e-10!49;UBERON:0003080!2.29e-09!40;UBERON:0002780!2.92e-09!39;UBERON:0001890!2.92e-09!39;UBERON:0006240!2.92e-09!39;UBERON:0003056!4.02e-09!49;UBERON:0002791!9.74e-09!29;UBERON:0003528!9.74e-09!29;UBERON:0001893!9.74e-09!29;UBERON:0000025!2.53e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.28e-19,75;UBERON:0001017,3.49e-19,73;UBERON:0004121,7.56e-16,95;UBERON:0000924,7.56e-16,95;UBERON:0006601,7.56e-16,95;UBERON:0010314,1.81e-15,92;UBERON:0000073,6.46e-14,54;UBERON:0002346,1.30e-13,64;UBERON:0003075,1.30e-13,64;UBERON:0007284,1.30e-13,64;UBERON:0001049,4.90e-13,52;UBERON:0005068,4.90e-13,52;UBERON:0006241,4.90e-13,52;UBERON:0007135,4.90e-13,52;UBERON:0002020,7.46e-12,34;UBERON:0000955,1.63e-10,47;UBERON:0006238,1.63e-10,47;UBERON:0002616,5.77e-10,46;UBERON:0010371,9.10e-10,73;UBERON:0003080,1.11e-09,40;UBERON:0002780,1.43e-09,39;UBERON:0001890,1.43e-09,39;UBERON:0006240,1.43e-09,39;UBERON:0003056,2.00e-09,49;UBERON:0003528,5.01e-09,29;UBERON:0002791,5.01e-09,29;UBERON:0001893,5.01e-09,29;UBERON:0000025,3.37e-07,114 | |||
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| |||
|short_description=p5@Qk | |||
}} |
Revision as of 07:14, 4 August 2015
Short description: | p5@Qk |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Qk_5end |
Coexpression cluster: | NA |
Association with transcript: | -368bp_to_ENSMUST00000042296_5end |
EntrezGene: | 19317 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.92e-14 | 33 |
neuronal stem cell | 1.92e-14 | 33 |
neuroblast | 1.92e-14 | 33 |
electrically signaling cell | 1.92e-14 | 33 |
ectodermal cell | 3.31e-13 | 44 |
neurectodermal cell | 3.31e-13 | 44 |
neural cell | 8.69e-13 | 43 |
electrically responsive cell | 7.74e-12 | 39 |
electrically active cell | 7.74e-12 | 39 |
CNS neuron (sensu Vertebrata) | 1.04e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.28e-19 | 75 |
central nervous system | 3.49e-19 | 73 |
ectoderm-derived structure | 7.56e-16 | 95 |
ectoderm | 7.56e-16 | 95 |
presumptive ectoderm | 7.56e-16 | 95 |
structure with developmental contribution from neural crest | 1.81e-15 | 92 |
regional part of nervous system | 6.46e-14 | 54 |
neurectoderm | 1.30e-13 | 64 |
neural plate | 1.30e-13 | 64 |
presumptive neural plate | 1.30e-13 | 64 |
neural tube | 4.90e-13 | 52 |
neural rod | 4.90e-13 | 52 |
future spinal cord | 4.90e-13 | 52 |
neural keel | 4.90e-13 | 52 |
gray matter | 7.46e-12 | 34 |
brain | 1.63e-10 | 47 |
future brain | 1.63e-10 | 47 |
regional part of brain | 5.77e-10 | 46 |
ecto-epithelium | 9.10e-10 | 73 |
anterior neural tube | 1.11e-09 | 40 |
regional part of forebrain | 1.43e-09 | 39 |
forebrain | 1.43e-09 | 39 |
future forebrain | 1.43e-09 | 39 |
pre-chordal neural plate | 2.00e-09 | 49 |
brain grey matter | 5.01e-09 | 29 |
regional part of telencephalon | 5.01e-09 | 29 |
telencephalon | 5.01e-09 | 29 |
tube | 3.37e-07 | 114 |