FFCP PHASE1:Mm9::chr17:23966130..23966141,-: Difference between revisions
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{{FFCP|EntrezGene=67673|HGNC=|MCL_coexpression_id=3082|UniProt=P62869|association_with_transcript=-54bp_to_NM_026305,uc008atr.1,uc008ats.1_5end|description=CAGE_peak_3_at_Tceb2_5end|id=chr17:23966130..23966141,-|ontology_enrichment_celltype=CL:0000055!1.72e-20!50;CL:0002321!1.55e-17!70;CL:0000220!1.55e-17!70;CL:0000221!7.04e-17!44;CL:0000133!7.04e-17!44;CL:0002319!1.07e-16!43;CL:0000393!6.83e-14!39;CL:0000211!6.83e-14!39;CL:0000540!1.42e-10!33;CL:0000047!1.42e-10!33;CL:0000031!1.42e-10!33;CL:0000404!1.42e-10!33;CL:0000548!2.12e-10!115;CL:0000004!2.12e-10!115;CL:0000255!2.12e-10!115;CL:0000117!4.94e-10!23;CL:0000337!4.94e-10!23;CL:0002371!1.11e-09!118;CL:0000144!7.96e-09!121;CL:0000012!7.96e-09!121;CL:0000333!1.19e-07!10;CL:0000095!1.19e-07!10;CL:0000243!1.19e-07!10;CL:0000123!1.19e-07!10;CL:0000125!1.19e-07!10;CL:0000030!1.19e-07!10;CL:0000339!1.19e-07!10;CL:0002453!9.33e-07!8|ontology_enrichment_celltype_v019_2=CL:0002321,4.63e-18,70;CL:0000221,3.66e-17,44;CL:0000133,3.66e-17,44;CL:0002319,5.62e-17,43;CL:0000393,4.03e-14,39;CL:0000211,4.03e-14,39;CL:0000540,9.64e-11,33;CL:0000047,9.64e-11,33;CL:0000031,9.64e-11,33;CL:0000404,9.64e-11,33;CL:0000117,3.44e-10,23;CL:0000337,3.44e-10,23;CL:0000333,9.15e-08,10;CL:0000095,9.15e-08,10;CL:0000243,9.15e-08,10;CL:0000123,9.15e-08,10;CL:0000125,9.15e-08,10;CL:0000030,9.15e-08,10;CL:0000339,9.15e-08,10;CL:0002453,7.46e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.08e-18!75;UBERON:0001016!2.08e-18!75;UBERON:0001017!2.18e-17!73;UBERON:0005743!2.18e-17!73;UBERON:0004121!9.21e-13!102;UBERON:0000924!9.21e-13!102;UBERON:0006601!9.21e-13!102;UBERON:0001049!2.12e-11!52;UBERON:0005068!2.12e-11!52;UBERON:0006241!2.12e-11!52;UBERON:0007135!2.12e-11!52;UBERON:0002020!3.06e-11!34;UBERON:0002616!4.44e-10!49;UBERON:0000955!5.12e-10!50;UBERON:0006238!5.12e-10!50;UBERON:0002346!1.12e-09!71;UBERON:0003075!1.12e-09!71;UBERON:0007284!1.12e-09!71;UBERON:0002791!8.48e-09!29;UBERON:0003528!8.48e-09!29;UBERON:0001893!8.48e-09!29;UBERON:0002780!1.12e-08!39;UBERON:0001890!1.12e-08!39;UBERON:0006240!1.12e-08!39;UBERON:0003080!1.29e-08!40;UBERON:0000033!1.00e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.36e-18,75;UBERON:0001017,1.48e-17,73;UBERON:0004121,1.58e-12,95;UBERON:0000924,1.58e-12,95;UBERON:0006601,1.58e-12,95;UBERON:0000073,1.63e-12,54;UBERON:0001049,1.81e-11,52;UBERON:0005068,1.81e-11,52;UBERON:0006241,1.81e-11,52;UBERON:0007135,1.81e-11,52;UBERON:0002020,2.03e-11,34;UBERON:0010314,2.82e-11,92;UBERON:0002346,1.13e-09,64;UBERON:0003075,1.13e-09,64;UBERON:0007284,1.13e-09,64;UBERON:0002616,5.85e-09,46;UBERON:0003528,6.22e-09,29;UBERON:0002791,6.22e-09,29;UBERON:0001893,6.22e-09,29;UBERON:0000955,6.66e-09,47;UBERON:0006238,6.66e-09,47;UBERON:0002780,8.28e-09,39;UBERON:0001890,8.28e-09,39;UBERON:0006240,8.28e-09,39;UBERON:0003080,9.52e-09,40;UBERON:0010371,1.27e-07,73|phase1_expression=3.52327463630547,2.09385244583617,4.09499315450582,1.81478526784098,2.00358291978539,1.84667199103079,2.80335168714631,1.42035655785734,0.140788722151667,0.70219357896598,1.88339765048055,0.398860794976682,0.684802919724823,0.262261207256992,1.33243904726265,0.607425802169478,1.39912375625629,0.315462165358238,0.685572168028694,0.84877930359606,5.01755411891312,1.09220046320974,1.30599894569468,2.07990149631429,3.89995777814189,3.44539178469012,2.15380998079537,2.15471232685889,2.28028103347649,1.76421090831952,4.6563407237614,0.635030673459631,0.61506478758457,0,0.866554859253824,1.32987716286794,0.816677425049476,1.67412652294763,1.5626706890476,0,1.76469446409304,3.41522742479223,1.94204141212461,6.16894408080329,5.17022349219524,8.9937908559224,17.9950009200049,10.6832326626419,14.0599156950062,8.94377535741704,8.9591309840232,12.9377307928474,0.167782606057736,0,0.336093799142464,6.43148590089868,6.87680255853016,5.15672092277442,4.85559506063035,4.7609188134483,2.53532561402472,23.7191172448392,14.2287167377782,5.39939830368839,4.94433181283487,4.9733608046227,12.8828047522914,11.9107674649682,3.31806759387129,2.02508907497536,2.94454945891935,5.71301968807607,7.06779331045163,2.9397791811589,2.39613677545591,4.5960939330501,3.30347642998166,4.59674417106676,6.45147439676223,5.53922408466814,5.12330804173494,4.16730696445408,5.02529398202486,7.87867654044352,5.19514042441154,4.71405736757868,4.41352210477219,5.77838282058432,4.16494063332512,6.72586884950391,1.73918693221007,2.58127163094416,4.0798280022465,1.07940638327563,1.94932925234301,1.79210754838934,3.7919993435573,3.57903677413921,5.19572009205738,5.65343319216544,2.67602497575693,8.98285341900225,0,0,4.32982082022428,3.80039798212648,4.54972000513305,1.94112595522402,0.258937883647172,1.63286352971307,1.73485326766136,2.13125834818499,2.7673859670727,2.26083960828934,1.64624189989987,2.01066546127481,3.70792451601561,0.86759614151947,0,2.10296904931632,0.220841518460394,1.45462575940567,3.72783522436244,0.878342391034642,1.25668024088073,0.255457055208591,0.95852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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:67673 | |||
|HGNC= | |||
|MCL_coexpression_id=3082 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P62869 | |||
|association_with_transcript=-54bp_to_NM_026305,uc008atr.1,uc008ats.1_5end | |||
|cluster_id=chr17:23966130..23966141,- | |||
|description=CAGE_peak_3_at_Tceb2_5end | |||
|id=chr17:23966130..23966141,- | |||
|ontology_enrichment_celltype=CL:0000055!1.72e-20!50;CL:0002321!1.55e-17!70;CL:0000220!1.55e-17!70;CL:0000221!7.04e-17!44;CL:0000133!7.04e-17!44;CL:0002319!1.07e-16!43;CL:0000393!6.83e-14!39;CL:0000211!6.83e-14!39;CL:0000540!1.42e-10!33;CL:0000047!1.42e-10!33;CL:0000031!1.42e-10!33;CL:0000404!1.42e-10!33;CL:0000548!2.12e-10!115;CL:0000004!2.12e-10!115;CL:0000255!2.12e-10!115;CL:0000117!4.94e-10!23;CL:0000337!4.94e-10!23;CL:0002371!1.11e-09!118;CL:0000144!7.96e-09!121;CL:0000012!7.96e-09!121;CL:0000333!1.19e-07!10;CL:0000095!1.19e-07!10;CL:0000243!1.19e-07!10;CL:0000123!1.19e-07!10;CL:0000125!1.19e-07!10;CL:0000030!1.19e-07!10;CL:0000339!1.19e-07!10;CL:0002453!9.33e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.63e-18,70;CL:0000221,3.66e-17,44;CL:0000133,3.66e-17,44;CL:0002319,5.62e-17,43;CL:0000393,4.03e-14,39;CL:0000211,4.03e-14,39;CL:0000540,9.64e-11,33;CL:0000047,9.64e-11,33;CL:0000031,9.64e-11,33;CL:0000404,9.64e-11,33;CL:0000117,3.44e-10,23;CL:0000337,3.44e-10,23;CL:0000333,9.15e-08,10;CL:0000095,9.15e-08,10;CL:0000243,9.15e-08,10;CL:0000123,9.15e-08,10;CL:0000125,9.15e-08,10;CL:0000030,9.15e-08,10;CL:0000339,9.15e-08,10;CL:0002453,7.46e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.08e-18!75;UBERON:0001016!2.08e-18!75;UBERON:0001017!2.18e-17!73;UBERON:0005743!2.18e-17!73;UBERON:0004121!9.21e-13!102;UBERON:0000924!9.21e-13!102;UBERON:0006601!9.21e-13!102;UBERON:0001049!2.12e-11!52;UBERON:0005068!2.12e-11!52;UBERON:0006241!2.12e-11!52;UBERON:0007135!2.12e-11!52;UBERON:0002020!3.06e-11!34;UBERON:0002616!4.44e-10!49;UBERON:0000955!5.12e-10!50;UBERON:0006238!5.12e-10!50;UBERON:0002346!1.12e-09!71;UBERON:0003075!1.12e-09!71;UBERON:0007284!1.12e-09!71;UBERON:0002791!8.48e-09!29;UBERON:0003528!8.48e-09!29;UBERON:0001893!8.48e-09!29;UBERON:0002780!1.12e-08!39;UBERON:0001890!1.12e-08!39;UBERON:0006240!1.12e-08!39;UBERON:0003080!1.29e-08!40;UBERON:0000033!1.00e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.36e-18,75;UBERON:0001017,1.48e-17,73;UBERON:0004121,1.58e-12,95;UBERON:0000924,1.58e-12,95;UBERON:0006601,1.58e-12,95;UBERON:0000073,1.63e-12,54;UBERON:0001049,1.81e-11,52;UBERON:0005068,1.81e-11,52;UBERON:0006241,1.81e-11,52;UBERON:0007135,1.81e-11,52;UBERON:0002020,2.03e-11,34;UBERON:0010314,2.82e-11,92;UBERON:0002346,1.13e-09,64;UBERON:0003075,1.13e-09,64;UBERON:0007284,1.13e-09,64;UBERON:0002616,5.85e-09,46;UBERON:0003528,6.22e-09,29;UBERON:0002791,6.22e-09,29;UBERON:0001893,6.22e-09,29;UBERON:0000955,6.66e-09,47;UBERON:0006238,6.66e-09,47;UBERON:0002780,8.28e-09,39;UBERON:0001890,8.28e-09,39;UBERON:0006240,8.28e-09,39;UBERON:0003080,9.52e-09,40;UBERON:0010371,1.27e-07,73 | |||
|phase1_expression=3.52327463630547,2.09385244583617,4.09499315450582,1.81478526784098,2.00358291978539,1.84667199103079,2.80335168714631,1.42035655785734,0.140788722151667,0.70219357896598,1.88339765048055,0.398860794976682,0.684802919724823,0.262261207256992,1.33243904726265,0.607425802169478,1.39912375625629,0.315462165358238,0.685572168028694,0.84877930359606,5.01755411891312,1.09220046320974,1.30599894569468,2.07990149631429,3.89995777814189,3.44539178469012,2.15380998079537,2.15471232685889,2.28028103347649,1.76421090831952,4.6563407237614,0.635030673459631,0.61506478758457,0,0.866554859253824,1.32987716286794,0.816677425049476,1.67412652294763,1.5626706890476,0,1.76469446409304,3.41522742479223,1.94204141212461,6.16894408080329,5.17022349219524,8.9937908559224,17.9950009200049,10.6832326626419,14.0599156950062,8.94377535741704,8.9591309840232,12.9377307928474,0.167782606057736,0,0.336093799142464,6.43148590089868,6.87680255853016,5.15672092277442,4.85559506063035,4.7609188134483,2.53532561402472,23.7191172448392,14.2287167377782,5.39939830368839,4.94433181283487,4.9733608046227,12.8828047522914,11.9107674649682,3.31806759387129,2.02508907497536,2.94454945891935,5.71301968807607,7.06779331045163,2.9397791811589,2.39613677545591,4.5960939330501,3.30347642998166,4.59674417106676,6.45147439676223,5.53922408466814,5.12330804173494,4.16730696445408,5.02529398202486,7.87867654044352,5.19514042441154,4.71405736757868,4.41352210477219,5.77838282058432,4.16494063332512,6.72586884950391,1.73918693221007,2.58127163094416,4.0798280022465,1.07940638327563,1.94932925234301,1.79210754838934,3.7919993435573,3.57903677413921,5.19572009205738,5.65343319216544,2.67602497575693,8.98285341900225,0,0,4.32982082022428,3.80039798212648,4.54972000513305,1.94112595522402,0.258937883647172,1.63286352971307,1.73485326766136,2.13125834818499,2.7673859670727,2.26083960828934,1.64624189989987,2.01066546127481,3.70792451601561,0.86759614151947,0,2.10296904931632,0.220841518460394,1.45462575940567,3.72783522436244,0.878342391034642,1.25668024088073,0.255457055208591,0.958520996047362,1.19980546198682,1.14363204365758,1.9472783122627,2.28750301409313,2.26177833803156,2.08589184230732,4.34716277461562,2.0778804455956,2.43361894601636,0.916554274652847,0.995255764880744,2.27450482590307,0.841767423545896,1.43132487258974,3.44853156650209,2.16074555766419,1.65775299619287,0.748401490664606,0.384341160854549,1.59292931751539,1.55222022443409,2.80238390812695,2.08016688184601,1.58356011747554,2.84954452155847,2.78047249225598,1.39300866608867,1.02891068203972,1.99034266818493,2.1066395619397,2.31613116403244,0.852490498186778,2.69263504296152,2.57978665979206,1.80062061461015,1.89395788468168,1.77087808572663,1.07986979021165,3.72054311600653,2.14618721119695,1.05088808130453,1.81015834904829,2.95501435342371,2.02672023864639,1.90059983652932,3.51280184465681,1.07365135008297,3.78521907415429,2.46971069710283,0.991256348951394,2.11560453330835,1.70630600428187,0.928946687441754,1.15980715189884,1.21010114774006,0.667134131534611,1.90225626112559,1.42358718463353,1.15289268306808,0.754005626400808,0.795825888164603,0.779856348476481,0,0.864552199498777,0.597423819763102,1.70701110857774,2.17072173958485,2.25415471346161,2.03651327845314,1.55161989734101,1.19230893813542,0.948548056863859,1.18088118383682,1.09899109488962,1.97435462274881,0.889357881261447,1.16791574001266,0.196558995113203,1.34917267430912,0.811440485554012,0.964708639009667,1.52775511068852,0.287696137450811,0.648540907100142,3.84385978463314,0,0.744281895337007,0.936113019343682,0.757736633841335,2.33216637578486,0.964887042726734,1.47802552133284,3.22135400009824,0.814824882210129,1.52770577197669,1.64283173801951,0.837531287209079,0.476087281772027,0.585400943573396,0.945810864637146,0.44292937929755,1.11618338060241,0.81931657357869,1.38147985492716,0.867894351489069,0,2.17562273527484,1.96705709207614,0.551873492609465,2.40825884981688,1.99259867206745,7.54100748732707,1.00988370881749,4.73262329124385,1.95219372148319,2.36965737506079,1.91175038362042,2.45078541490634,1.98153571552183,2.02405350837447,3.21481443702443,1.97643888973262,1.92792789853084,1.41940085208269,1.78065603667255,0.81443479676788,0.824850614862677,0,2.6705869977048,1.51161778482376,1.88605079755898,1.18120757152309,2.45948118355142,0.516856586336442,1.45413491791002,1.06949213515416,0.316036757935816,0,2.06271086496374,1.70219802876894,1.62054984628179,3.36332577835162,3.42939256050548,1.41872186913819,2.14042581122485,1.81003922662333,2.43571959291679,4.4587624532105,3.38931313382112,1.54369878638473,0.32977250588296,1.29171541356724,0.904693873922338,0.835606408021955,1.14898629821543,0.582961673259701,2.59595422814714,0.170870880797853,0.82554747185289,0.925972636848558,0.565105371014073,0.410082683163076,0.228778173206523,0.679913719975421,1.53946597556024,0.829199842826543,1.90934123603023,1.58167996790568,1.01659733563424,1.72808545314882,1.25452977608681,1.9652630737156,1.61837215661785,0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| |||
|short_description=p3@Tceb2 | |||
}} |
Revision as of 09:50, 4 August 2015
Short description: | p3@Tceb2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tceb2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3082 |
Association with transcript: | -54bp_to_NM_026305, uc008atr.1, uc008ats.1_5end |
EntrezGene: | 67673 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.63e-18 | 70 |
ectodermal cell | 3.66e-17 | 44 |
neurectodermal cell | 3.66e-17 | 44 |
neural cell | 5.62e-17 | 43 |
electrically responsive cell | 4.03e-14 | 39 |
electrically active cell | 4.03e-14 | 39 |
neuron | 9.64e-11 | 33 |
neuronal stem cell | 9.64e-11 | 33 |
neuroblast | 9.64e-11 | 33 |
electrically signaling cell | 9.64e-11 | 33 |
CNS neuron (sensu Vertebrata) | 3.44e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.44e-10 | 23 |
migratory neural crest cell | 9.15e-08 | 10 |
neuron associated cell | 9.15e-08 | 10 |
glial cell (sensu Vertebrata) | 9.15e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 9.15e-08 | 10 |
glial cell | 9.15e-08 | 10 |
glioblast | 9.15e-08 | 10 |
glioblast (sensu Vertebrata) | 9.15e-08 | 10 |
oligodendrocyte precursor cell | 7.46e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.36e-18 | 75 |
central nervous system | 1.48e-17 | 73 |
ectoderm-derived structure | 1.58e-12 | 95 |
ectoderm | 1.58e-12 | 95 |
presumptive ectoderm | 1.58e-12 | 95 |
regional part of nervous system | 1.63e-12 | 54 |
neural tube | 1.81e-11 | 52 |
neural rod | 1.81e-11 | 52 |
future spinal cord | 1.81e-11 | 52 |
neural keel | 1.81e-11 | 52 |
gray matter | 2.03e-11 | 34 |
structure with developmental contribution from neural crest | 2.82e-11 | 92 |
neurectoderm | 1.13e-09 | 64 |
neural plate | 1.13e-09 | 64 |
presumptive neural plate | 1.13e-09 | 64 |
regional part of brain | 5.85e-09 | 46 |
brain grey matter | 6.22e-09 | 29 |
regional part of telencephalon | 6.22e-09 | 29 |
telencephalon | 6.22e-09 | 29 |
brain | 6.66e-09 | 47 |
future brain | 6.66e-09 | 47 |
regional part of forebrain | 8.28e-09 | 39 |
forebrain | 8.28e-09 | 39 |
future forebrain | 8.28e-09 | 39 |
anterior neural tube | 9.52e-09 | 40 |
ecto-epithelium | 1.27e-07 | 73 |