FFCP PHASE1:Mm9::chr11:106117487..106117503,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=19184|HGNC=|MCL_coexpression_id=20|UniProt=B1ARK2,P62196|association_with_transcript=0bp_to_NM_008950,uc007lyn.1_5end|description=CAGE_peak_2_at_Psmc5_5end|id=chr11:106117487..106117503,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.86e-18!71;UBERON:0003075!1.86e-18!71;UBERON:0007284!1.86e-18!71;UBERON:0001049!3.15e-18!52;UBERON:0005068!3.15e-18!52;UBERON:0006241!3.15e-18!52;UBERON:0007135!3.15e-18!52;UBERON:0004121!5.79e-18!102;UBERON:0000924!5.79e-18!102;UBERON:0006601!5.79e-18!102;UBERON:0000033!3.19e-17!63;UBERON:0000955!1.05e-16!50;UBERON:0006238!1.05e-16!50;UBERON:0002616!4.09e-16!49;UBERON:0000153!4.23e-16!94;UBERON:0007811!2.65e-14!86;UBERON:0003056!4.45e-14!49;UBERON:0001017!7.48e-14!73;UBERON:0005743!7.48e-14!73;UBERON:0000073!1.26e-13!75;UBERON:0001016!1.26e-13!75;UBERON:0003080!1.45e-13!40;UBERON:0002780!5.56e-13!39;UBERON:0001890!5.56e-13!39;UBERON:0006240!5.56e-13!39;UBERON:0002020!4.50e-12!34;UBERON:0002791!6.41e-10!29;UBERON:0003528!6.41e-10!29;UBERON:0001893!6.41e-10!29;UBERON:0000483!2.26e-07!181;UBERON:0000119!5.31e-07!183;UBERON:0002619!5.54e-07!17;UBERON:0000025!8.91e-07!114;UBERON:0000468!9.86e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.85e-18,54;UBERON:0001049,3.15e-18,52;UBERON:0005068,3.15e-18,52;UBERON:0006241,3.15e-18,52;UBERON:0007135,3.15e-18,52;UBERON:0010371,3.30e-17,73;UBERON:0010314,6.51e-17,92;UBERON:0002346,2.47e-16,64;UBERON:0003075,2.47e-16,64;UBERON:0007284,2.47e-16,64;UBERON:0000955,7.59e-16,47;UBERON:0006238,7.59e-16,47;UBERON:0004121,9.23e-16,95;UBERON:0000924,9.23e-16,95;UBERON:0006601,9.23e-16,95;UBERON:0002616,2.93e-15,46;UBERON:0003056,4.45e-14,49;UBERON:0001017,7.48e-14,73;UBERON:0001016,1.26e-13,75;UBERON:0003080,1.45e-13,40;UBERON:0002780,5.56e-13,39;UBERON:0001890,5.56e-13,39;UBERON:0006240,5.56e-13,39;UBERON:0002020,4.50e-12,34;UBERON:0003528,6.41e-10,29;UBERON:0002791,6.41e-10,29;UBERON:0001893,6.41e-10,29;UBERON:0002619,5.54e-07,17;UBERON:0000025,8.91e-07,114|phase1_expression=6.72625157840135,4.88565570695105,5.0049916332849,5.74682001482977,5.00895729946347,4.19698179779725,6.77476657727024,2.58246646883153,10.98152032783,10.5329036844897,9.93064215707929,9.33334260245436,4.62241970814255,4.54586092578786,3.33109761815663,3.44207954562704,4.19737126876888,4.88966356305268,4.52477630898938,5.51706547337439,9.35476191661768,5.06383851124515,8.35839325244593,7.83962871687693,6.42345986988076,6.89078356938024,5.1691439539089,3.44753972297422,14.0617330397717,8.56902441183765,5.98672378769323,5.08024538767705,3.07532393792285,0,5.19932915552294,5.65197794218874,3.06254034393554,5.4409111995798,0,1.57057123192139,3.52938892818609,0.683045484958446,1.45653105909346,5.28766635497425,3.85232338634155,5.68994931701213,4.69434806608824,6.97680500417429,7.68901639570651,11.0825042472342,7.41928034614421,8.62515386189829,5.87239121202077,2.90144856804538,2.68875039313971,5.14518872071894,3.72493471920384,2.06268836910977,8.49729135610311,6.87688273053643,10.775133859605,4.40497891689872,5.33576877666684,2.6996991518442,0.988866362566974,2.1314403448383,2.99600110518405,5.37905627450176,5.18448061542388,7.02030879324791,3.99617426567626,10.8547374073445,12.3686382932904,5.51208596467293,8.53024692062304,7.35375029288017,5.50579404996943,28.0912143787413,23.1945865216928,11.4741070325269,12.8082701043374,12.5019208933622,24.2889209131201,20.2594539611405,24.4477196442896,7.95497180778903,11.8168495063255,10.9975673036927,6.05809546665472,6.42358260907677,4.92769630792852,7.74381489283248,4.0798280022465,8.09554787456726,7.14754059192436,4.48026887097336,9.40977614882737,3.74946709671727,4.93593408745451,3.18005617059306,6.61964072950398,3.84979432242953,2.54805239706646,0,3.89683873820185,4.30711771307668,5.56076889516262,7.9928715803342,4.91981978929626,7.71899123137089,10.9295755862666,7.00270600117925,11.0695438682908,9.04335843315735,7.2904998424137,9.29932775839599,5.6854842578906,2.60278842455841,4.42305275974937,5.98537344805414,6.62524555381181,5.33362778448744,3.72783522436244,12.8823550685081,21.7824575085993,4.85368404896324,3.95389910869537,5.39912457894067,3.93917703926501,15.7280171375064,19.6725259212009,7.28795242254614,17.7300806596122,17.3886510984625,23.4800490352303,22.8760180925538,5.6011650117674,5.10068579501381,8.59257378674494,7.78634866779954,9.36867189331467,11.2652031172402,9.00310649026746,6.32960234910003,5.8511389270142,6.14945857367279,6.37171727006156,7.24369438069244,14.0119195406347,10.0226222488944,7.74184946321375,8.11024209982027,6.95118123063995,8.70630416305416,9.05441400194951,5.37392520409932,9.12877143507205,5.91900186363845,4.26245249093389,7.04227626620706,7.27030785941398,7.92273070428465,7.57583153872673,6.29645541591692,6.17068451549513,7.90615412151387,4.56064782379353,7.23945122676451,6.25327429671226,7.38753588355929,6.89084881139774,7.45619935869195,8.34290438105992,5.90508242545636,13.8791366052324,8.95270127699774,5.94753809370836,5.81791246659797,6.61193576659225,7.43157349953403,4.51036114627327,4.84040459096022,4.66993892074228,4.37518940058886,5.21981967698963,7.74085087202851,4.27269854960458,4.17808591286417,6.04388670069272,6.29173586057955,4.97117514711797,4.38110801159608,7.58671603812327,6.85491075658373,4.50830942692322,6.10953983535943,4.84881217919064,4.76923575254166,3.85742876457969,6.9376769550413,6.27994911365499,5.42947521255922,8.59712618552732,7.00749444007595,4.12773889737726,4.72210436008193,4.26006254915856,2.65294875727659,2.5462585178142,4.60313819921297,6.32327384422638,7.68771956926628,4.31304619582064,4.46569137202204,7.17686648163489,7.07220858251913,6.63770430031075,10.1313139486307,3.32555742299888,7.57965647081939,7.33342393989116,4.58311731593008,5.86725620721255,3.85264392116176,5.95109102215034,5.65887578787617,5.04432461139811,4.4292937929755,5.26200736569707,5.40748938561935,5.00786447411097,4.33947175744535,3.01582567878545,2.71952841909355,7.37646409528554,7.45029215022778,23.6009367282054,22.3874321391108,5.40985319743029,12.6235463602186,4.41711507182759,4.29482618726302,3.23135096599198,3.82350076724083,3.7875774594007,3.39691836946599,6.07216052512342,3.79932615284705,8.30104333687699,14.4594592389813,4.11626247103979,5.69809931735217,3.74640006513225,6.92874516484649,1.32745138339963,7.28341908464944,8.76738315197778,5.65815239267694,6.79194353625777,6.14870295887855,4.13485269069154,5.81653967164009,6.06045543254026,3.47640433729398,7.37930260024991,2.06271086496374,12.9367050186439,9.36317688962813,10.7367707539686,9.00215547132688,9.22169214939823,8.20496560969525,7.0756078858912,5.48036908406279,5.39744928546534,4.2366414172764,6.61585194164886,7.09010887648364,6.29711264114032,8.08193194037288,8.95292580023523,7.55048138827282,7.28702091574627,19.4696567111035,4.95525554313773,4.54051109519089,4.25947412950337,4.1441060541032,2.05041341581538,3.88922894451088,2.54967644990783,1.6794174278839,2.62579950228405,8.59203556213602,10.2809197913869,6.70954241518601,7.34436317588249,6.06356058441959,7.42432716737004,6.33862428008657,5.20716771069616,8.11443420150492,5.4438288782553,6.21339313086926,9.01908701894705,8.37292657846281,8.93475848468327,5.83353565032143,9.42866711387437,6.25137664315879,5.75050469364194,6.77062801188541,6.50127935439407,6.76435538312817,4.89651010638371,5.68820017130721,11.149886840959,10.2710957164827,7.53540773271211,5.54982756569192,7.54989148168807,7.3319224207181,6.94140777720513,6.46185279668145,6.70619898563999,6.04957110821043,4.58052039476836,4.71438024037614,5.2594605981706,8.16229381014761,6.43759264784788,8.07424709485281,8.05846158547577,3.47741269257943,3.37828455812128,5.86085197655248,5.14484109789758,7.52358156053045,10.7302850097243,9.66682996665071,9.73922372846974,7.38968684077857,15.0718154349541,16.6186657425734,10.1253375034771,16.6618845192962,14.0474146785103,16.5683299760582,15.3605274424581,7.18244772121856,8.36594668195257,6.80698807791223,8.38452650511929,5.51530525350042,5.11167473943715,5.97501665992793,6.09746498224449,5.81203587056734,5.57654459758527,6.41329560712659,4.58843386602424,5.8262888688431,5.80098236451694,5.23923060411381,4.75125736373908,5.01563973205633,10.714233420886,6.32955356577908,7.88599280486455,6.03417740941747,6.19934093863034,7.1219744149841,7.0582035311498,6.34609559187574,6.21955107767427,7.89209134313529,6.3827933507555,6.17256498823512,4.98267076121531,5.31924204828043,7.7753898202241,6.50734732981057,4.62975866354739,5.24602213669686,7.25187986180766,7.73535794573874,5.92993829413414,5.07360263974886,7.65163857547391|short_description=p2@Psmc5}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:19184 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:B1ARK2,uniprot:P62196 | |||
|association_with_transcript=0bp_to_NM_008950,uc007lyn.1_5end | |||
|cluster_id=chr11:106117487..106117503,+ | |||
|description=CAGE_peak_2_at_Psmc5_5end | |||
|id=chr11:106117487..106117503,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.86e-18!71;UBERON:0003075!1.86e-18!71;UBERON:0007284!1.86e-18!71;UBERON:0001049!3.15e-18!52;UBERON:0005068!3.15e-18!52;UBERON:0006241!3.15e-18!52;UBERON:0007135!3.15e-18!52;UBERON:0004121!5.79e-18!102;UBERON:0000924!5.79e-18!102;UBERON:0006601!5.79e-18!102;UBERON:0000033!3.19e-17!63;UBERON:0000955!1.05e-16!50;UBERON:0006238!1.05e-16!50;UBERON:0002616!4.09e-16!49;UBERON:0000153!4.23e-16!94;UBERON:0007811!2.65e-14!86;UBERON:0003056!4.45e-14!49;UBERON:0001017!7.48e-14!73;UBERON:0005743!7.48e-14!73;UBERON:0000073!1.26e-13!75;UBERON:0001016!1.26e-13!75;UBERON:0003080!1.45e-13!40;UBERON:0002780!5.56e-13!39;UBERON:0001890!5.56e-13!39;UBERON:0006240!5.56e-13!39;UBERON:0002020!4.50e-12!34;UBERON:0002791!6.41e-10!29;UBERON:0003528!6.41e-10!29;UBERON:0001893!6.41e-10!29;UBERON:0000483!2.26e-07!181;UBERON:0000119!5.31e-07!183;UBERON:0002619!5.54e-07!17;UBERON:0000025!8.91e-07!114;UBERON:0000468!9.86e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.85e-18,54;UBERON:0001049,3.15e-18,52;UBERON:0005068,3.15e-18,52;UBERON:0006241,3.15e-18,52;UBERON:0007135,3.15e-18,52;UBERON:0010371,3.30e-17,73;UBERON:0010314,6.51e-17,92;UBERON:0002346,2.47e-16,64;UBERON:0003075,2.47e-16,64;UBERON:0007284,2.47e-16,64;UBERON:0000955,7.59e-16,47;UBERON:0006238,7.59e-16,47;UBERON:0004121,9.23e-16,95;UBERON:0000924,9.23e-16,95;UBERON:0006601,9.23e-16,95;UBERON:0002616,2.93e-15,46;UBERON:0003056,4.45e-14,49;UBERON:0001017,7.48e-14,73;UBERON:0001016,1.26e-13,75;UBERON:0003080,1.45e-13,40;UBERON:0002780,5.56e-13,39;UBERON:0001890,5.56e-13,39;UBERON:0006240,5.56e-13,39;UBERON:0002020,4.50e-12,34;UBERON:0003528,6.41e-10,29;UBERON:0002791,6.41e-10,29;UBERON:0001893,6.41e-10,29;UBERON:0002619,5.54e-07,17;UBERON:0000025,8.91e-07,114 | |||
|phase1_expression=6.72625157840135,4.88565570695105,5.0049916332849,5.74682001482977,5.00895729946347,4.19698179779725,6.77476657727024,2.58246646883153,10.98152032783,10.5329036844897,9.93064215707929,9.33334260245436,4.62241970814255,4.54586092578786,3.33109761815663,3.44207954562704,4.19737126876888,4.88966356305268,4.52477630898938,5.51706547337439,9.35476191661768,5.06383851124515,8.35839325244593,7.83962871687693,6.42345986988076,6.89078356938024,5.1691439539089,3.44753972297422,14.0617330397717,8.56902441183765,5.98672378769323,5.08024538767705,3.07532393792285,0,5.19932915552294,5.65197794218874,3.06254034393554,5.4409111995798,0,1.57057123192139,3.52938892818609,0.683045484958446,1.45653105909346,5.28766635497425,3.85232338634155,5.68994931701213,4.69434806608824,6.97680500417429,7.68901639570651,11.0825042472342,7.41928034614421,8.62515386189829,5.87239121202077,2.90144856804538,2.68875039313971,5.14518872071894,3.72493471920384,2.06268836910977,8.49729135610311,6.87688273053643,10.775133859605,4.40497891689872,5.33576877666684,2.6996991518442,0.988866362566974,2.1314403448383,2.99600110518405,5.37905627450176,5.18448061542388,7.02030879324791,3.99617426567626,10.8547374073445,12.3686382932904,5.51208596467293,8.53024692062304,7.35375029288017,5.50579404996943,28.0912143787413,23.1945865216928,11.4741070325269,12.8082701043374,12.5019208933622,24.2889209131201,20.2594539611405,24.4477196442896,7.95497180778903,11.8168495063255,10.9975673036927,6.05809546665472,6.42358260907677,4.92769630792852,7.74381489283248,4.0798280022465,8.09554787456726,7.14754059192436,4.48026887097336,9.40977614882737,3.74946709671727,4.93593408745451,3.18005617059306,6.61964072950398,3.84979432242953,2.54805239706646,0,3.89683873820185,4.30711771307668,5.56076889516262,7.9928715803342,4.91981978929626,7.71899123137089,10.9295755862666,7.00270600117925,11.0695438682908,9.04335843315735,7.2904998424137,9.29932775839599,5.6854842578906,2.60278842455841,4.42305275974937,5.98537344805414,6.62524555381181,5.33362778448744,3.72783522436244,12.8823550685081,21.7824575085993,4.85368404896324,3.95389910869537,5.39912457894067,3.93917703926501,15.7280171375064,19.6725259212009,7.28795242254614,17.7300806596122,17.3886510984625,23.4800490352303,22.8760180925538,5.6011650117674,5.10068579501381,8.59257378674494,7.78634866779954,9.36867189331467,11.2652031172402,9.00310649026746,6.32960234910003,5.8511389270142,6.14945857367279,6.37171727006156,7.24369438069244,14.0119195406347,10.0226222488944,7.74184946321375,8.11024209982027,6.95118123063995,8.70630416305416,9.05441400194951,5.37392520409932,9.12877143507205,5.91900186363845,4.26245249093389,7.04227626620706,7.27030785941398,7.92273070428465,7.57583153872673,6.29645541591692,6.17068451549513,7.90615412151387,4.56064782379353,7.23945122676451,6.25327429671226,7.38753588355929,6.89084881139774,7.45619935869195,8.34290438105992,5.90508242545636,13.8791366052324,8.95270127699774,5.94753809370836,5.81791246659797,6.61193576659225,7.43157349953403,4.51036114627327,4.84040459096022,4.66993892074228,4.37518940058886,5.21981967698963,7.74085087202851,4.27269854960458,4.17808591286417,6.04388670069272,6.29173586057955,4.97117514711797,4.38110801159608,7.58671603812327,6.85491075658373,4.50830942692322,6.10953983535943,4.84881217919064,4.76923575254166,3.85742876457969,6.9376769550413,6.27994911365499,5.42947521255922,8.59712618552732,7.00749444007595,4.12773889737726,4.72210436008193,4.26006254915856,2.65294875727659,2.5462585178142,4.60313819921297,6.32327384422638,7.68771956926628,4.31304619582064,4.46569137202204,7.17686648163489,7.07220858251913,6.63770430031075,10.1313139486307,3.32555742299888,7.57965647081939,7.33342393989116,4.58311731593008,5.86725620721255,3.85264392116176,5.95109102215034,5.65887578787617,5.04432461139811,4.4292937929755,5.26200736569707,5.40748938561935,5.00786447411097,4.33947175744535,3.01582567878545,2.71952841909355,7.37646409528554,7.45029215022778,23.6009367282054,22.3874321391108,5.40985319743029,12.6235463602186,4.41711507182759,4.29482618726302,3.23135096599198,3.82350076724083,3.7875774594007,3.39691836946599,6.07216052512342,3.79932615284705,8.30104333687699,14.4594592389813,4.11626247103979,5.69809931735217,3.74640006513225,6.92874516484649,1.32745138339963,7.28341908464944,8.76738315197778,5.65815239267694,6.79194353625777,6.14870295887855,4.13485269069154,5.81653967164009,6.06045543254026,3.47640433729398,7.37930260024991,2.06271086496374,12.9367050186439,9.36317688962813,10.7367707539686,9.00215547132688,9.22169214939823,8.20496560969525,7.0756078858912,5.48036908406279,5.39744928546534,4.2366414172764,6.61585194164886,7.09010887648364,6.29711264114032,8.08193194037288,8.95292580023523,7.55048138827282,7.28702091574627,19.4696567111035,4.95525554313773,4.54051109519089,4.25947412950337,4.1441060541032,2.05041341581538,3.88922894451088,2.54967644990783,1.6794174278839,2.62579950228405,8.59203556213602,10.2809197913869,6.70954241518601,7.34436317588249,6.06356058441959,7.42432716737004,6.33862428008657,5.20716771069616,8.11443420150492,5.4438288782553,6.21339313086926,9.01908701894705,8.37292657846281,8.93475848468327,5.83353565032143,9.42866711387437,6.25137664315879,5.75050469364194,6.77062801188541,6.50127935439407,6.76435538312817,4.89651010638371,5.68820017130721,11.149886840959,10.2710957164827,7.53540773271211,5.54982756569192,7.54989148168807,7.3319224207181,6.94140777720513,6.46185279668145,6.70619898563999,6.04957110821043,4.58052039476836,4.71438024037614,5.2594605981706,8.16229381014761,6.43759264784788,8.07424709485281,8.05846158547577,3.47741269257943,3.37828455812128,5.86085197655248,5.14484109789758,7.52358156053045,10.7302850097243,9.66682996665071,9.73922372846974,7.38968684077857,15.0718154349541,16.6186657425734,10.1253375034771,16.6618845192962,14.0474146785103,16.5683299760582,15.3605274424581,7.18244772121856,8.36594668195257,6.80698807791223,8.38452650511929,5.51530525350042,5.11167473943715,5.97501665992793,6.09746498224449,5.81203587056734,5.57654459758527,6.41329560712659,4.58843386602424,5.8262888688431,5.80098236451694,5.23923060411381,4.75125736373908,5.01563973205633,10.714233420886,6.32955356577908,7.88599280486455,6.03417740941747,6.19934093863034,7.1219744149841,7.0582035311498,6.34609559187574,6.21955107767427,7.89209134313529,6.3827933507555,6.17256498823512,4.98267076121531,5.31924204828043,7.7753898202241,6.50734732981057,4.62975866354739,5.24602213669686,7.25187986180766,7.73535794573874,5.92993829413414,5.07360263974886,7.65163857547391 | |||
|short_description=p2@Psmc5 | |||
}} |
Revision as of 07:31, 5 August 2015
Short description: | p2@Psmc5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Psmc5_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 0bp_to_NM_008950, uc007lyn.1_5end |
EntrezGene: | 19184 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.85e-18 | 54 |
neural tube | 3.15e-18 | 52 |
neural rod | 3.15e-18 | 52 |
future spinal cord | 3.15e-18 | 52 |
neural keel | 3.15e-18 | 52 |
ecto-epithelium | 3.30e-17 | 73 |
structure with developmental contribution from neural crest | 6.51e-17 | 92 |
neurectoderm | 2.47e-16 | 64 |
neural plate | 2.47e-16 | 64 |
presumptive neural plate | 2.47e-16 | 64 |
brain | 7.59e-16 | 47 |
future brain | 7.59e-16 | 47 |
ectoderm-derived structure | 9.23e-16 | 95 |
ectoderm | 9.23e-16 | 95 |
presumptive ectoderm | 9.23e-16 | 95 |
regional part of brain | 2.93e-15 | 46 |
pre-chordal neural plate | 4.45e-14 | 49 |
central nervous system | 7.48e-14 | 73 |
nervous system | 1.26e-13 | 75 |
anterior neural tube | 1.45e-13 | 40 |
regional part of forebrain | 5.56e-13 | 39 |
forebrain | 5.56e-13 | 39 |
future forebrain | 5.56e-13 | 39 |
gray matter | 4.50e-12 | 34 |
brain grey matter | 6.41e-10 | 29 |
regional part of telencephalon | 6.41e-10 | 29 |
telencephalon | 6.41e-10 | 29 |
regional part of cerebral cortex | 5.54e-07 | 17 |
tube | 8.91e-07 | 114 |