FFCP PHASE1:Mm9::chr8:109555254..109555265,+: Difference between revisions
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{{FFCP|EntrezGene=116733|HGNC=|MCL_coexpression_id=13|UniProt=Q8VEJ9|association_with_transcript=28bp_to_NM_126165,uc009ngv.1_5end|description=CAGE_peak_2_at_Vps4a_5end|id=chr8:109555254..109555265,+|ontology_enrichment_celltype=CL:0000540!2.72e-15!33;CL:0000047!2.72e-15!33;CL:0000031!2.72e-15!33;CL:0000404!2.72e-15!33;CL:0000117!2.57e-14!23;CL:0000337!2.57e-14!23;CL:0002319!5.35e-13!43;CL:0000393!1.58e-12!39;CL:0000211!1.58e-12!39;CL:0000221!3.23e-12!44;CL:0000133!3.23e-12!44;CL:0000055!1.70e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.33e-15,33;CL:0000047,1.33e-15,33;CL:0000031,1.33e-15,33;CL:0000404,1.33e-15,33;CL:0000117,1.32e-14,23;CL:0000337,1.32e-14,23;CL:0002319,6.89e-13,43;CL:0000393,8.40e-13,39;CL:0000211,8.40e-13,39;CL:0000221,4.73e-12,44;CL:0000133,4.73e-12,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.11e-24!73;UBERON:0005743!2.11e-24!73;UBERON:0000073!4.49e-24!75;UBERON:0001016!4.49e-24!75;UBERON:0002346!5.20e-20!71;UBERON:0003075!5.20e-20!71;UBERON:0007284!5.20e-20!71;UBERON:0004121!1.91e-19!102;UBERON:0000924!1.91e-19!102;UBERON:0006601!1.91e-19!102;UBERON:0001049!7.98e-19!52;UBERON:0005068!7.98e-19!52;UBERON:0006241!7.98e-19!52;UBERON:0007135!7.98e-19!52;UBERON:0000955!1.71e-17!50;UBERON:0006238!1.71e-17!50;UBERON:0002616!3.31e-17!49;UBERON:0002020!7.23e-17!34;UBERON:0000033!4.66e-16!63;UBERON:0003056!9.32e-16!49;UBERON:0003080!7.52e-15!40;UBERON:0002780!9.52e-15!39;UBERON:0001890!9.52e-15!39;UBERON:0006240!9.52e-15!39;UBERON:0000153!7.67e-14!94;UBERON:0007811!9.74e-14!86;UBERON:0002791!1.62e-13!29;UBERON:0003528!1.62e-13!29;UBERON:0001893!1.62e-13!29;UBERON:0000956!8.48e-09!21;UBERON:0001869!8.48e-09!21;UBERON:0000203!8.48e-09!21;UBERON:0002619!3.48e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.68e-24,73;UBERON:0001016,3.58e-24,75;UBERON:0000073,7.93e-21,54;UBERON:0002346,1.05e-20,64;UBERON:0003075,1.05e-20,64;UBERON:0007284,1.05e-20,64;UBERON:0004121,1.56e-19,95;UBERON:0000924,1.56e-19,95;UBERON:0006601,1.56e-19,95;UBERON:0001049,5.11e-19,52;UBERON:0005068,5.11e-19,52;UBERON:0006241,5.11e-19,52;UBERON:0007135,5.11e-19,52;UBERON:0002020,3.27e-17,34;UBERON:0010314,5.45e-17,92;UBERON:0003056,4.46e-16,49;UBERON:0010371,7.67e-16,73;UBERON:0000955,8.40e-16,47;UBERON:0006238,8.40e-16,47;UBERON:0002616,1.63e-15,46;UBERON:0003080,3.77e-15,40;UBERON:0002780,4.80e-15,39;UBERON:0001890,4.80e-15,39;UBERON:0006240,4.80e-15,39;UBERON:0003528,8.72e-14,29;UBERON:0002791,8.72e-14,29;UBERON:0001893,8.72e-14,29;UBERON:0000956,5.82e-09,21;UBERON:0001869,5.82e-09,21;UBERON:0000203,5.82e-09,21;UBERON:0002619,2.60e-07,17|phase1_expression=1.28119077683835,1.74487703819681,2.72999543633722,2.11724947914781,0.500895729946347,1.00727563147134,1.16806320297763,0.774739940649458,4.50523910885334,4.68129052643987,0.68487187290202,1.35612670292072,1.02720437958723,0.611942816932982,0.999329285446988,1.41732687172878,0,0.788655413395594,0.685572168028694,0.84877930359606,3.74190476664707,0.992909512008853,1.56719873483361,0.799962113967033,0.91763712426868,0.57423196411502,2.15380998079537,0.430942465371778,1.71021077510736,1.00812051903972,0.221730510655305,1.27006134691926,1.23012957516914,0,0,0.831173226792462,0.816677425049476,0.418531630736908,0,0,2.35292595212406,1.36609096991689,0.971020706062307,1.1330713617802,2.23029248682932,2.20256102594018,1.56478268869608,0.872100625521786,1.75748946187577,4.47188767870852,1.39986421625363,2.87505128729943,1.51004345451963,2.90144856804538,2.01656279485478,1.02903774414379,1.43266719969378,0.515672092277442,7.89034197352431,11.1088105647127,6.97214543856797,0.677689064138264,1.77858959222228,0,0,0.7104801149461,0.898800331555214,2.30530983192933,3.00699875694585,3.64516033495565,4.6271491497304,9.42648248532552,8.61387309711293,5.14461356702807,4.50473713785711,2.75765635983006,5.50579404996943,6.89511625660014,5.68344173048101,7.78129097608144,8.05091263701205,15.106487746146,8.93385596804419,4.50210088025344,5.19514042441154,6.48182888042069,8.68467252874528,10.2519695203915,1.66597625333005,1.96486056277642,0,0.860423876981386,1.3599426674155,0,1.29955283489534,0.896053774194671,1.68533304158102,2.21559419351475,2.33807404142582,1.41335829804136,0.704217098883403,2.56652954828636,5.09610479413291,0,2.16491041011214,1.01343946190039,1.51657333504435,1.25602267690966,0.517875767294343,0.890652834388949,2.4287945747259,3.04465478312141,3.92046345335299,1.65794904607885,1.88141931417128,1.25666591329675,0.741584903203122,0.144599356919912,0,1.13236794963186,1.98757366614354,0.484875253135222,0,2.92780797011547,2.72280718857492,1.78819938646014,0.718890747035522,0.599902730993408,1.01656181658452,2.39665023047716,6.8625090422794,4.77486538028885,4.51943232499919,5.11430914660661,2.90903262383384,5.19172041816825,0.611036183101898,0.497627882440372,0.758168275301024,1.47309299120532,4.55421550369463,1.83921683546778,2.52086981727489,4.21973489940002,2.51735046859913,3.33095672740609,3.466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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:116733 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8VEJ9 | |||
|association_with_transcript=28bp_to_NM_126165,uc009ngv.1_5end | |||
|cluster_id=chr8:109555254..109555265,+ | |||
|description=CAGE_peak_2_at_Vps4a_5end | |||
|id=chr8:109555254..109555265,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.72e-15!33;CL:0000047!2.72e-15!33;CL:0000031!2.72e-15!33;CL:0000404!2.72e-15!33;CL:0000117!2.57e-14!23;CL:0000337!2.57e-14!23;CL:0002319!5.35e-13!43;CL:0000393!1.58e-12!39;CL:0000211!1.58e-12!39;CL:0000221!3.23e-12!44;CL:0000133!3.23e-12!44;CL:0000055!1.70e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.33e-15,33;CL:0000047,1.33e-15,33;CL:0000031,1.33e-15,33;CL:0000404,1.33e-15,33;CL:0000117,1.32e-14,23;CL:0000337,1.32e-14,23;CL:0002319,6.89e-13,43;CL:0000393,8.40e-13,39;CL:0000211,8.40e-13,39;CL:0000221,4.73e-12,44;CL:0000133,4.73e-12,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.11e-24!73;UBERON:0005743!2.11e-24!73;UBERON:0000073!4.49e-24!75;UBERON:0001016!4.49e-24!75;UBERON:0002346!5.20e-20!71;UBERON:0003075!5.20e-20!71;UBERON:0007284!5.20e-20!71;UBERON:0004121!1.91e-19!102;UBERON:0000924!1.91e-19!102;UBERON:0006601!1.91e-19!102;UBERON:0001049!7.98e-19!52;UBERON:0005068!7.98e-19!52;UBERON:0006241!7.98e-19!52;UBERON:0007135!7.98e-19!52;UBERON:0000955!1.71e-17!50;UBERON:0006238!1.71e-17!50;UBERON:0002616!3.31e-17!49;UBERON:0002020!7.23e-17!34;UBERON:0000033!4.66e-16!63;UBERON:0003056!9.32e-16!49;UBERON:0003080!7.52e-15!40;UBERON:0002780!9.52e-15!39;UBERON:0001890!9.52e-15!39;UBERON:0006240!9.52e-15!39;UBERON:0000153!7.67e-14!94;UBERON:0007811!9.74e-14!86;UBERON:0002791!1.62e-13!29;UBERON:0003528!1.62e-13!29;UBERON:0001893!1.62e-13!29;UBERON:0000956!8.48e-09!21;UBERON:0001869!8.48e-09!21;UBERON:0000203!8.48e-09!21;UBERON:0002619!3.48e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.68e-24,73;UBERON:0001016,3.58e-24,75;UBERON:0000073,7.93e-21,54;UBERON:0002346,1.05e-20,64;UBERON:0003075,1.05e-20,64;UBERON:0007284,1.05e-20,64;UBERON:0004121,1.56e-19,95;UBERON:0000924,1.56e-19,95;UBERON:0006601,1.56e-19,95;UBERON:0001049,5.11e-19,52;UBERON:0005068,5.11e-19,52;UBERON:0006241,5.11e-19,52;UBERON:0007135,5.11e-19,52;UBERON:0002020,3.27e-17,34;UBERON:0010314,5.45e-17,92;UBERON:0003056,4.46e-16,49;UBERON:0010371,7.67e-16,73;UBERON:0000955,8.40e-16,47;UBERON:0006238,8.40e-16,47;UBERON:0002616,1.63e-15,46;UBERON:0003080,3.77e-15,40;UBERON:0002780,4.80e-15,39;UBERON:0001890,4.80e-15,39;UBERON:0006240,4.80e-15,39;UBERON:0003528,8.72e-14,29;UBERON:0002791,8.72e-14,29;UBERON:0001893,8.72e-14,29;UBERON:0000956,5.82e-09,21;UBERON:0001869,5.82e-09,21;UBERON:0000203,5.82e-09,21;UBERON:0002619,2.60e-07,17 | |||
|phase1_expression=1.28119077683835,1.74487703819681,2.72999543633722,2.11724947914781,0.500895729946347,1.00727563147134,1.16806320297763,0.774739940649458,4.50523910885334,4.68129052643987,0.68487187290202,1.35612670292072,1.02720437958723,0.611942816932982,0.999329285446988,1.41732687172878,0,0.788655413395594,0.685572168028694,0.84877930359606,3.74190476664707,0.992909512008853,1.56719873483361,0.799962113967033,0.91763712426868,0.57423196411502,2.15380998079537,0.430942465371778,1.71021077510736,1.00812051903972,0.221730510655305,1.27006134691926,1.23012957516914,0,0,0.831173226792462,0.816677425049476,0.418531630736908,0,0,2.35292595212406,1.36609096991689,0.971020706062307,1.1330713617802,2.23029248682932,2.20256102594018,1.56478268869608,0.872100625521786,1.75748946187577,4.47188767870852,1.39986421625363,2.87505128729943,1.51004345451963,2.90144856804538,2.01656279485478,1.02903774414379,1.43266719969378,0.515672092277442,7.89034197352431,11.1088105647127,6.97214543856797,0.677689064138264,1.77858959222228,0,0,0.7104801149461,0.898800331555214,2.30530983192933,3.00699875694585,3.64516033495565,4.6271491497304,9.42648248532552,8.61387309711293,5.14461356702807,4.50473713785711,2.75765635983006,5.50579404996943,6.89511625660014,5.68344173048101,7.78129097608144,8.05091263701205,15.106487746146,8.93385596804419,4.50210088025344,5.19514042441154,6.48182888042069,8.68467252874528,10.2519695203915,1.66597625333005,1.96486056277642,0,0.860423876981386,1.3599426674155,0,1.29955283489534,0.896053774194671,1.68533304158102,2.21559419351475,2.33807404142582,1.41335829804136,0.704217098883403,2.56652954828636,5.09610479413291,0,2.16491041011214,1.01343946190039,1.51657333504435,1.25602267690966,0.517875767294343,0.890652834388949,2.4287945747259,3.04465478312141,3.92046345335299,1.65794904607885,1.88141931417128,1.25666591329675,0.741584903203122,0.144599356919912,0,1.13236794963186,1.98757366614354,0.484875253135222,0,2.92780797011547,2.72280718857492,1.78819938646014,0.718890747035522,0.599902730993408,1.01656181658452,2.39665023047716,6.8625090422794,4.77486538028885,4.51943232499919,5.11430914660661,2.90903262383384,5.19172041816825,0.611036183101898,0.497627882440372,0.758168275301024,1.47309299120532,4.55421550369463,1.83921683546778,2.52086981727489,4.21973489940002,2.51735046859913,3.33095672740609,3.46696380870997,1.03481348295606,3.66465587985832,2.83659120251729,2.46331573829528,1.97276159184817,1.66828349535359,2.089512999133,1.4404749548556,1.99034266818493,0,1.02939162845886,1.13665399758237,3.10688658803253,2.81431271977315,2.70093092191522,2.13070262026689,2.75469924446365,2.62254091908543,1.62773761325285,2.41446061259657,1.98501082024188,1.97471819896177,2.29834449710733,1.54030738137126,1.46199987425332,0.878200461164203,0.268412837520744,4.20579897128254,4.83651678182637,1.32167513193519,1.85115396664481,2.13288250535234,3.48355007790658,1.54640953586512,1.21010114774006,0.889512175379481,1.14135375667535,0,1.31759163779209,1.25667604400135,0.198956472041151,0.38992817423824,3.59527763461689,1.08069024937347,0.398282546508734,3.22435431620239,2.51346727741403,1.1270773567308,1.83286195060783,1.16371492300575,1.54298803758701,0.948548056863859,1.03327103585722,2.19798218977925,0.740382983530803,0.296452627087149,0.83422552858047,0.982794975566015,1.12431056192427,1.82574109249653,0.964708639009667,0.25462585178142,0.287696137450811,0.486405680325106,1.09824565275233,0,0.744281895337007,0.624075346229121,0.252578877947112,0.179397413521912,0.482443521363367,0.739012760666419,2.84237117655727,2.60743962307241,1.69745085775188,3.98973422090454,2.1775813467436,2.14239276797412,1.95133647857799,2.36452716159286,1.32878813789265,1.2756381492599,0.81931657357869,0.518054945597687,0.867894351489069,0,0.54390568381871,1.47529281905711,1.93155722413313,4.81651769963376,5.62616095642575,1.3114795630134,2.01976741763498,2.2085575359138,2.34263246577983,3.23135096599198,2.62865677747807,3.56477878531831,3.39691836946599,2.42886421004937,3.79932615284705,2.37172666767914,2.89189184779626,0.709700426041343,2.67098405500883,0.81443479676788,0.824850614862677,0,2.18502572539483,1.81394134178851,1.69744571780308,1.77181135728464,1.53717573971964,0.516856586336442,0.363533729477506,1.42598951353889,0.948110273807448,0,1.03135543248187,1.36175842301515,3.78128297465751,2.06973894052407,1.28602221018955,3.3694644392032,3.92411398724555,2.63278432963394,2.43571959291679,1.17335854031855,0.42366414172764,1.10264199027481,0.49465875882444,0.807322133479528,1.32688434841943,0.358117032009409,1.14898629821543,1.1659233465194,2.41052892613663,0.512612642393558,1.03193433981611,0.925972636848558,0.941842285023455,0.820165366326151,0.915112692826091,0.509935289981566,0.69975726161829,0.414599921413271,0,2.05618395827738,2.64315307264903,1.51207477150522,0.627264888043406,1.31017538247707,1.21377911746339,1.07449492442937,0.785267825952089,1.42576470620972,0,4.50954350947352,1.64468200648377,1.82004339502807,1.9445118834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| |||
|short_description=p2@Vps4a | |||
}} |
Revision as of 21:05, 5 August 2015
Short description: | p2@Vps4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Vps4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 28bp_to_NM_126165, uc009ngv.1_5end |
EntrezGene: | 116733 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.33e-15 | 33 |
neuronal stem cell | 1.33e-15 | 33 |
neuroblast | 1.33e-15 | 33 |
electrically signaling cell | 1.33e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.32e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.32e-14 | 23 |
neural cell | 6.89e-13 | 43 |
electrically responsive cell | 8.40e-13 | 39 |
electrically active cell | 8.40e-13 | 39 |
ectodermal cell | 4.73e-12 | 44 |
neurectodermal cell | 4.73e-12 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.68e-24 | 73 |
nervous system | 3.58e-24 | 75 |
regional part of nervous system | 7.93e-21 | 54 |
neurectoderm | 1.05e-20 | 64 |
neural plate | 1.05e-20 | 64 |
presumptive neural plate | 1.05e-20 | 64 |
ectoderm-derived structure | 1.56e-19 | 95 |
ectoderm | 1.56e-19 | 95 |
presumptive ectoderm | 1.56e-19 | 95 |
neural tube | 5.11e-19 | 52 |
neural rod | 5.11e-19 | 52 |
future spinal cord | 5.11e-19 | 52 |
neural keel | 5.11e-19 | 52 |
gray matter | 3.27e-17 | 34 |
structure with developmental contribution from neural crest | 5.45e-17 | 92 |
pre-chordal neural plate | 4.46e-16 | 49 |
ecto-epithelium | 7.67e-16 | 73 |
brain | 8.40e-16 | 47 |
future brain | 8.40e-16 | 47 |
regional part of brain | 1.63e-15 | 46 |
anterior neural tube | 3.77e-15 | 40 |
regional part of forebrain | 4.80e-15 | 39 |
forebrain | 4.80e-15 | 39 |
future forebrain | 4.80e-15 | 39 |
brain grey matter | 8.72e-14 | 29 |
regional part of telencephalon | 8.72e-14 | 29 |
telencephalon | 8.72e-14 | 29 |
cerebral cortex | 5.82e-09 | 21 |
cerebral hemisphere | 5.82e-09 | 21 |
pallium | 5.82e-09 | 21 |
regional part of cerebral cortex | 2.60e-07 | 17 |