FFCP PHASE1:Mm9::chr18:67770512..67770569,-: Difference between revisions
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{{FFCP|EntrezGene=68166|HGNC=|MCL_coexpression_id=3159|UniProt=Q6ZPX2|association_with_transcript=-68bp_to_uc008fmp.1_5end|description=CAGE_peak_1_at_Spire1_5end|id=chr18:67770512..67770569,-|ontology_enrichment_celltype=CL:0000221!4.49e-11!44;CL:0000133!4.49e-11!44;CL:0002319!5.67e-11!43;CL:0000540!1.10e-10!33;CL:0000047!1.10e-10!33;CL:0000031!1.10e-10!33;CL:0000404!1.10e-10!33;CL:0000117!1.39e-10!23;CL:0000337!1.39e-10!23;CL:0000055!2.85e-07!50;CL:0000393!3.36e-07!39;CL:0000211!3.36e-07!39|ontology_enrichment_celltype_v019_2=CL:0000221,4.38e-11,44;CL:0000133,4.38e-11,44;CL:0002319,5.53e-11,43;CL:0000540,1.07e-10,33;CL:0000047,1.07e-10,33;CL:0000031,1.07e-10,33;CL:0000404,1.07e-10,33;CL:0000117,1.36e-10,23;CL:0000337,1.36e-10,23;CL:0000393,3.31e-07,39;CL:0000211,3.31e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!4.41e-22!102;UBERON:0000924!4.41e-22!102;UBERON:0006601!4.41e-22!102;UBERON:0000073!5.32e-22!75;UBERON:0001016!5.32e-22!75;UBERON:0001017!4.10e-21!73;UBERON:0005743!4.10e-21!73;UBERON:0000033!4.86e-19!63;UBERON:0002346!3.12e-18!71;UBERON:0003075!3.12e-18!71;UBERON:0007284!3.12e-18!71;UBERON:0001049!1.79e-17!52;UBERON:0005068!1.79e-17!52;UBERON:0006241!1.79e-17!52;UBERON:0007135!1.79e-17!52;UBERON:0000955!5.80e-17!50;UBERON:0006238!5.80e-17!50;UBERON:0002616!2.64e-16!49;UBERON:0002020!5.18e-16!34;UBERON:0003056!8.89e-15!49;UBERON:0002791!4.66e-14!29;UBERON:0003528!4.66e-14!29;UBERON:0001893!4.66e-14!29;UBERON:0003080!5.12e-13!40;UBERON:0002780!1.87e-12!39;UBERON:0001890!1.87e-12!39;UBERON:0006240!1.87e-12!39;UBERON:0000956!9.67e-11!21;UBERON:0001869!9.67e-11!21;UBERON:0000203!9.67e-11!21;UBERON:0002619!1.30e-08!17;UBERON:0000153!1.65e-07!94;UBERON:0007811!1.69e-07!86;UBERON:0000468!8.74e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.93e-23,95;UBERON:0000924,1.93e-23,95;UBERON:0006601,1.93e-23,95;UBERON:0001016,5.04e-22,75;UBERON:0001017,3.89e-21,73;UBERON:0002346,4.87e-20,64;UBERON:0003075,4.87e-20,64;UBERON:0007284,4.87e-20,64;UBERON:0010371,3.19e-19,73;UBERON:0000073,2.04e-18,54;UBERON:0001049,1.72e-17,52;UBERON:0005068,1.72e-17,52;UBERON:0006241,1.72e-17,52;UBERON:0007135,1.72e-17,52;UBERON:0002020,4.98e-16,34;UBERON:0000955,1.61e-15,47;UBERON:0006238,1.61e-15,47;UBERON:0002616,7.10e-15,46;UBERON:0003056,8.58e-15,49;UBERON:0003528,4.51e-14,29;UBERON:0002791,4.51e-14,29;UBERON:0001893,4.51e-14,29;UBERON:0003080,4.97e-13,40;UBERON:0002780,1.82e-12,39;UBERON:0001890,1.82e-12,39;UBERON:0006240,1.82e-12,39;UBERON:0000956,9.44e-11,21;UBERON:0001869,9.44e-11,21;UBERON:0000203,9.44e-11,21;UBERON:0010314,6.48e-10,92;UBERON:0002619,1.28e-08,17;UBERON:0000922,9.64e-07,320|phase1_expression=14.2532473923267,0,0,0,0,1.51091344720701,2.10251376535973,0.387369970324729,0.563154888606667,0.936258105287974,5.82141091966717,10.8490136233658,0,0.0874204024189974,55.2962204614,62.767332890846,79.0504922284806,1.73504190947031,1.37114433605739,4.66828616977833,16.1582251287033,6.7517846816602,5.22399578277871,0.639969691173627,0.45881856213434,1.14846392823004,0,0.430942465371778,0.380046838912748,1.00812051903972,0.886922042621219,13.9706748161119,11.6862309641068,15.8481681015439,0.288851619751275,0.332469290716985,0.612508068787107,0.837063261473815,0,0,0,0,0,3.27331726736501,5.17022349219524,2.56965453026354,4.69434806608824,30.5235218932625,20.8701873597748,17.4986909166855,16.2384249085421,12.9377307928474,0.167782606057736,0,0.336093799142464,3.34437266846731,3.15186783932632,3.09403255366465,32.5729501983952,28.5655128806898,43.1005354384202,4.06613438482959,8.89294796111139,5.39939830368839,3.9554654502679,4.2628806896766,8.08920298399693,9.60545763303886,45.2086709664963,34.021496459586,40.5927175408167,25.7085885963423,28.9337788646614,29.5202826108039,28.1785684793615,33.0918763179608,29.731287869835,36.6462660304489,43.0098293117482,30.7295050411352,22.4144726825904,29.6920621217353,35.7354238721768,32.0774687718058,30.1012548120316,37.1232017696821,31.6065131374009,29.8239113320481,37.863096666592,22.3691817916085,1.15945795480671,0.860423876981386,6.79971333707751,0,0,0,10.1119982494861,10.3962496772615,7.79358013808606,9.54016851177919,16.0561498545416,11.5493829672886,5.09610479413291,14.2213340630666,2.59789249213457,2.53359865475099,2.52762222507392,8.10705546005326,2.84831672011889,10.0940654564081,13.1848848342263,8.52503339273995,11.761390360059,8.28974523039424,10.7005723493491,10.4303270803631,5.43828929015623,15.3275318335106,31.8459798701955,18.2796540440572,32.6845447321382,26.6681389224372,1.86391761218122,43.331557957709,40.8421078286237,2.55457055208591,1.43778149407104,1.19980546198682,1.14363204365758,44.3380292638275,46.6650614874999,34.8062555352634,49.018458294222,63.417433417922,40.9342447782333,41.8582458714815,9.47106083807942,19.1586734739543,9.35074206204597,10.1012090825508,17.6963802429277,16.7828536236435,26.289070951581,25.1677045785644,27.8949646520444,23.060469651273,27.3609035714408,16.039608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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68166 | |||
|HGNC= | |||
|MCL_coexpression_id=3159 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6ZPX2 | |||
|association_with_transcript=-68bp_to_uc008fmp.1_5end | |||
|cluster_id=chr18:67770512..67770569,- | |||
|description=CAGE_peak_1_at_Spire1_5end | |||
|id=chr18:67770512..67770569,- | |||
|ontology_enrichment_celltype=CL:0000221!4.49e-11!44;CL:0000133!4.49e-11!44;CL:0002319!5.67e-11!43;CL:0000540!1.10e-10!33;CL:0000047!1.10e-10!33;CL:0000031!1.10e-10!33;CL:0000404!1.10e-10!33;CL:0000117!1.39e-10!23;CL:0000337!1.39e-10!23;CL:0000055!2.85e-07!50;CL:0000393!3.36e-07!39;CL:0000211!3.36e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.38e-11,44;CL:0000133,4.38e-11,44;CL:0002319,5.53e-11,43;CL:0000540,1.07e-10,33;CL:0000047,1.07e-10,33;CL:0000031,1.07e-10,33;CL:0000404,1.07e-10,33;CL:0000117,1.36e-10,23;CL:0000337,1.36e-10,23;CL:0000393,3.31e-07,39;CL:0000211,3.31e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.41e-22!102;UBERON:0000924!4.41e-22!102;UBERON:0006601!4.41e-22!102;UBERON:0000073!5.32e-22!75;UBERON:0001016!5.32e-22!75;UBERON:0001017!4.10e-21!73;UBERON:0005743!4.10e-21!73;UBERON:0000033!4.86e-19!63;UBERON:0002346!3.12e-18!71;UBERON:0003075!3.12e-18!71;UBERON:0007284!3.12e-18!71;UBERON:0001049!1.79e-17!52;UBERON:0005068!1.79e-17!52;UBERON:0006241!1.79e-17!52;UBERON:0007135!1.79e-17!52;UBERON:0000955!5.80e-17!50;UBERON:0006238!5.80e-17!50;UBERON:0002616!2.64e-16!49;UBERON:0002020!5.18e-16!34;UBERON:0003056!8.89e-15!49;UBERON:0002791!4.66e-14!29;UBERON:0003528!4.66e-14!29;UBERON:0001893!4.66e-14!29;UBERON:0003080!5.12e-13!40;UBERON:0002780!1.87e-12!39;UBERON:0001890!1.87e-12!39;UBERON:0006240!1.87e-12!39;UBERON:0000956!9.67e-11!21;UBERON:0001869!9.67e-11!21;UBERON:0000203!9.67e-11!21;UBERON:0002619!1.30e-08!17;UBERON:0000153!1.65e-07!94;UBERON:0007811!1.69e-07!86;UBERON:0000468!8.74e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.93e-23,95;UBERON:0000924,1.93e-23,95;UBERON:0006601,1.93e-23,95;UBERON:0001016,5.04e-22,75;UBERON:0001017,3.89e-21,73;UBERON:0002346,4.87e-20,64;UBERON:0003075,4.87e-20,64;UBERON:0007284,4.87e-20,64;UBERON:0010371,3.19e-19,73;UBERON:0000073,2.04e-18,54;UBERON:0001049,1.72e-17,52;UBERON:0005068,1.72e-17,52;UBERON:0006241,1.72e-17,52;UBERON:0007135,1.72e-17,52;UBERON:0002020,4.98e-16,34;UBERON:0000955,1.61e-15,47;UBERON:0006238,1.61e-15,47;UBERON:0002616,7.10e-15,46;UBERON:0003056,8.58e-15,49;UBERON:0003528,4.51e-14,29;UBERON:0002791,4.51e-14,29;UBERON:0001893,4.51e-14,29;UBERON:0003080,4.97e-13,40;UBERON:0002780,1.82e-12,39;UBERON:0001890,1.82e-12,39;UBERON:0006240,1.82e-12,39;UBERON:0000956,9.44e-11,21;UBERON:0001869,9.44e-11,21;UBERON:0000203,9.44e-11,21;UBERON:0010314,6.48e-10,92;UBERON:0002619,1.28e-08,17;UBERON:0000922,9.64e-07,320 | |||
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| |||
|short_description=p1@Spire1 | |||
}} |
Revision as of 01:47, 6 August 2015
Short description: | p1@Spire1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Spire1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3159 |
Association with transcript: | -68bp_to_uc008fmp.1_5end |
EntrezGene: | 68166 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.38e-11 | 44 |
neurectodermal cell | 4.38e-11 | 44 |
neural cell | 5.53e-11 | 43 |
neuron | 1.07e-10 | 33 |
neuronal stem cell | 1.07e-10 | 33 |
neuroblast | 1.07e-10 | 33 |
electrically signaling cell | 1.07e-10 | 33 |
CNS neuron (sensu Vertebrata) | 1.36e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.36e-10 | 23 |
electrically responsive cell | 3.31e-07 | 39 |
electrically active cell | 3.31e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.93e-23 | 95 |
ectoderm | 1.93e-23 | 95 |
presumptive ectoderm | 1.93e-23 | 95 |
nervous system | 5.04e-22 | 75 |
central nervous system | 3.89e-21 | 73 |
neurectoderm | 4.87e-20 | 64 |
neural plate | 4.87e-20 | 64 |
presumptive neural plate | 4.87e-20 | 64 |
ecto-epithelium | 3.19e-19 | 73 |
regional part of nervous system | 2.04e-18 | 54 |
neural tube | 1.72e-17 | 52 |
neural rod | 1.72e-17 | 52 |
future spinal cord | 1.72e-17 | 52 |
neural keel | 1.72e-17 | 52 |
gray matter | 4.98e-16 | 34 |
brain | 1.61e-15 | 47 |
future brain | 1.61e-15 | 47 |
regional part of brain | 7.10e-15 | 46 |
pre-chordal neural plate | 8.58e-15 | 49 |
brain grey matter | 4.51e-14 | 29 |
regional part of telencephalon | 4.51e-14 | 29 |
telencephalon | 4.51e-14 | 29 |
anterior neural tube | 4.97e-13 | 40 |
regional part of forebrain | 1.82e-12 | 39 |
forebrain | 1.82e-12 | 39 |
future forebrain | 1.82e-12 | 39 |
cerebral cortex | 9.44e-11 | 21 |
cerebral hemisphere | 9.44e-11 | 21 |
pallium | 9.44e-11 | 21 |
structure with developmental contribution from neural crest | 6.48e-10 | 92 |
regional part of cerebral cortex | 1.28e-08 | 17 |
embryo | 9.64e-07 | 320 |