FFCP PHASE1:Mm9::chr13:78339611..78339623,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2873|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr13:78339611..78339623,-|id=chr13:78339611..78339623,-|ontology_enrichment_celltype=CL:0000221!9.38e-23!44;CL:0000133!9.38e-23!44;CL:0002319!5.63e-22!43;CL:0000055!4.63e-17!50;CL:0000540!2.40e-15!33;CL:0000047!2.40e-15!33;CL:0000031!2.40e-15!33;CL:0000404!2.40e-15!33;CL:0000117!2.78e-12!23;CL:0000337!2.78e-12!23;CL:0000393!9.22e-12!39;CL:0000211!9.22e-12!39;CL:0000333!1.23e-07!10;CL:0000095!1.23e-07!10;CL:0000243!1.23e-07!10;CL:0000123!1.23e-07!10;CL:0000125!1.23e-07!10;CL:0000030!1.23e-07!10;CL:0000339!1.23e-07!10;CL:0002321!1.37e-07!70;CL:0000220!1.37e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,1.70e-33,44;CL:0000133,1.70e-33,44;CL:0002319,2.86e-32,43;CL:0000540,7.99e-22,33;CL:0000047,7.99e-22,33;CL:0000031,7.99e-22,33;CL:0000404,7.99e-22,33;CL:0000117,4.38e-17,23;CL:0000337,4.38e-17,23;CL:0000393,6.80e-17,39;CL:0000211,6.80e-17,39;CL:0002321,8.51e-16,70;CL:0000333,3.11e-11,10;CL:0000095,3.11e-11,10;CL:0000243,3.11e-11,10;CL:0000123,3.11e-11,10;CL:0000125,3.11e-11,10;CL:0000030,3.11e-11,10;CL:0000339,3.11e-11,10;CL:0002453,3.31e-09,8;CL:0000128,2.26e-07,6;CL:0000126,2.26e-07,6;CL:0000127,2.26e-07,6;CL:0002609,3.06e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.82e-24!75;UBERON:0001016!6.82e-24!75;UBERON:0001017!1.71e-22!73;UBERON:0005743!1.71e-22!73;UBERON:0004121!2.49e-22!102;UBERON:0000924!2.49e-22!102;UBERON:0006601!2.49e-22!102;UBERON:0002346!5.26e-17!71;UBERON:0003075!5.26e-17!71;UBERON:0007284!5.26e-17!71;UBERON:0000033!3.97e-15!63;UBERON:0001049!2.65e-14!52;UBERON:0005068!2.65e-14!52;UBERON:0006241!2.65e-14!52;UBERON:0007135!2.65e-14!52;UBERON:0003056!1.66e-12!49;UBERON:0002616!6.91e-12!49;UBERON:0000955!8.18e-12!50;UBERON:0006238!8.18e-12!50;UBERON:0002020!1.05e-10!34;UBERON:0002780!4.75e-10!39;UBERON:0001890!4.75e-10!39;UBERON:0006240!4.75e-10!39;UBERON:0003080!8.17e-10!40;UBERON:0002791!5.72e-08!29;UBERON:0003528!5.72e-08!29;UBERON:0001893!5.72e-08!29;UBERON:0007811!8.69e-08!86|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.38e-28,75;UBERON:0004121,1.53e-27,95;UBERON:0000924,1.53e-27,95;UBERON:0006601,1.53e-27,95;UBERON:0001017,5.46e-26,73;UBERON:0002346,1.98e-18,64;UBERON:0003075,1.98e-18,64;UBERON:0007284,1.98e-18,64;UBERON:0010371,5.14e-17,73;UBERON:0000073,8.29e-16,54;UBERON:0003056,2.14e-14,49;UBERON:0001049,2.57e-14,52;UBERON:0005068,2.57e-14,52;UBERON:0006241,2.57e-14,52;UBERON:0007135,2.57e-14,52;UBERON:0002020,1.21e-12,34;UBERON:0002780,9.04e-12,39;UBERON:0001890,9.04e-12,39;UBERON:0006240,9.04e-12,39;UBERON:0010314,2.61e-11,92;UBERON:0003080,2.85e-11,40;UBERON:0002616,5.72e-11,46;UBERON:0000955,1.49e-10,47;UBERON:0006238,1.49e-10,47;UBERON:0003528,1.09e-08,29;UBERON:0002791,1.09e-08,29;UBERON:0001893,1.09e-08,29;UBERON:0001954,3.43e-08,7;UBERON:0003022,3.43e-08,7;UBERON:0002421,3.43e-08,7;UBERON:0000349,3.43e-08,7;UBERON:0002600,3.43e-08,7;UBERON:0000010,8.80e-07,11|phase1_expression=6.56610273129655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.917733760808408,8.60630478782843,2.61630187656536,11.4236815021925,4.47188767870852,2.51975558925653,4.31257693094915,0,0,0,0,0,0,4.24864567805155,6.34789175126439,2.53532561402472,3.04960078862219,4.4464739805557,0.899899717281399,0,0.7104801149461,2.99600110518405,5.37905627450176,4.56234294157302,4.3201900266141,3.15487442027073,3.71346279724945,5.74258206474195,3.67472397644862,5.17565543498476,3.67687514644008,0,3.19218345212969,3.07213066512487,9.36392642884376,9.78917786545783,13.022834263919,0.837548997004143,0.56276261003168,1.68078072554491,5.89257170947335,6.54909731675874,1.4911955666024,3.40767869999328,9.14415877292105,0.869593466105033,0,0,0,0,0,0,1.02258193546835,1.03914401841148,0.35333957451034,8.59144860637751,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0.693941307064543,0.304465478312141,0.922461989024234,0.150722640552623,0.23517741427141,0.125666591329675,0,0,0,0.161766849947409,0,0,0,0.878342391034642,0.83778682725382,0,0,0,0,0.149790639404823,0,1.88481528169297,1.04294592115366,1.27857728665165,2.28566849015516,1.1356888414743,1.62942982160506,0,0.252722758433675,0.420883711772948,3.513251959993,1.60931473103431,2.34080768746954,1.35634336052144,1.29269348387523,1.2811372028485,1.3118241438362,0.258703370739016,0,0.378212160335639,0,0,0,0,0.205782136407943,1.19420560091096,0,0,0,1.03562886267751,0.703578179943289,0.36012412292203,0.946978942340841,0,0.462801338662135,0,0.804820204198858,0.116765342367169,0.329119699826961,0.656669856316381,0.243206428637567,0,0.219550115291051,0.134206418760372,1.47202963994889,6.07137213037778,0,0,1.06644125267617,0.928946687441754,0.128867461322093,0,0,0,0,0.164698954724011,0,0,0,0,0.216138049874694,0,2.0863469104839,1.02823661348756,1.1270773567308,0.610953983535943,0.581857461502877,0.350679099451593,0.505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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2873 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr13:78339611..78339623,- | |||
|description=CAGE_peak_at_chr13:78339611..78339623,- | |||
|id=chr13:78339611..78339623,- | |||
|ontology_enrichment_celltype=CL:0000221!9.38e-23!44;CL:0000133!9.38e-23!44;CL:0002319!5.63e-22!43;CL:0000055!4.63e-17!50;CL:0000540!2.40e-15!33;CL:0000047!2.40e-15!33;CL:0000031!2.40e-15!33;CL:0000404!2.40e-15!33;CL:0000117!2.78e-12!23;CL:0000337!2.78e-12!23;CL:0000393!9.22e-12!39;CL:0000211!9.22e-12!39;CL:0000333!1.23e-07!10;CL:0000095!1.23e-07!10;CL:0000243!1.23e-07!10;CL:0000123!1.23e-07!10;CL:0000125!1.23e-07!10;CL:0000030!1.23e-07!10;CL:0000339!1.23e-07!10;CL:0002321!1.37e-07!70;CL:0000220!1.37e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.70e-33,44;CL:0000133,1.70e-33,44;CL:0002319,2.86e-32,43;CL:0000540,7.99e-22,33;CL:0000047,7.99e-22,33;CL:0000031,7.99e-22,33;CL:0000404,7.99e-22,33;CL:0000117,4.38e-17,23;CL:0000337,4.38e-17,23;CL:0000393,6.80e-17,39;CL:0000211,6.80e-17,39;CL:0002321,8.51e-16,70;CL:0000333,3.11e-11,10;CL:0000095,3.11e-11,10;CL:0000243,3.11e-11,10;CL:0000123,3.11e-11,10;CL:0000125,3.11e-11,10;CL:0000030,3.11e-11,10;CL:0000339,3.11e-11,10;CL:0002453,3.31e-09,8;CL:0000128,2.26e-07,6;CL:0000126,2.26e-07,6;CL:0000127,2.26e-07,6;CL:0002609,3.06e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.82e-24!75;UBERON:0001016!6.82e-24!75;UBERON:0001017!1.71e-22!73;UBERON:0005743!1.71e-22!73;UBERON:0004121!2.49e-22!102;UBERON:0000924!2.49e-22!102;UBERON:0006601!2.49e-22!102;UBERON:0002346!5.26e-17!71;UBERON:0003075!5.26e-17!71;UBERON:0007284!5.26e-17!71;UBERON:0000033!3.97e-15!63;UBERON:0001049!2.65e-14!52;UBERON:0005068!2.65e-14!52;UBERON:0006241!2.65e-14!52;UBERON:0007135!2.65e-14!52;UBERON:0003056!1.66e-12!49;UBERON:0002616!6.91e-12!49;UBERON:0000955!8.18e-12!50;UBERON:0006238!8.18e-12!50;UBERON:0002020!1.05e-10!34;UBERON:0002780!4.75e-10!39;UBERON:0001890!4.75e-10!39;UBERON:0006240!4.75e-10!39;UBERON:0003080!8.17e-10!40;UBERON:0002791!5.72e-08!29;UBERON:0003528!5.72e-08!29;UBERON:0001893!5.72e-08!29;UBERON:0007811!8.69e-08!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.38e-28,75;UBERON:0004121,1.53e-27,95;UBERON:0000924,1.53e-27,95;UBERON:0006601,1.53e-27,95;UBERON:0001017,5.46e-26,73;UBERON:0002346,1.98e-18,64;UBERON:0003075,1.98e-18,64;UBERON:0007284,1.98e-18,64;UBERON:0010371,5.14e-17,73;UBERON:0000073,8.29e-16,54;UBERON:0003056,2.14e-14,49;UBERON:0001049,2.57e-14,52;UBERON:0005068,2.57e-14,52;UBERON:0006241,2.57e-14,52;UBERON:0007135,2.57e-14,52;UBERON:0002020,1.21e-12,34;UBERON:0002780,9.04e-12,39;UBERON:0001890,9.04e-12,39;UBERON:0006240,9.04e-12,39;UBERON:0010314,2.61e-11,92;UBERON:0003080,2.85e-11,40;UBERON:0002616,5.72e-11,46;UBERON:0000955,1.49e-10,47;UBERON:0006238,1.49e-10,47;UBERON:0003528,1.09e-08,29;UBERON:0002791,1.09e-08,29;UBERON:0001893,1.09e-08,29;UBERON:0001954,3.43e-08,7;UBERON:0003022,3.43e-08,7;UBERON:0002421,3.43e-08,7;UBERON:0000349,3.43e-08,7;UBERON:0002600,3.43e-08,7;UBERON:0000010,8.80e-07,11 | |||
|phase1_expression=6.56610273129655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.917733760808408,8.60630478782843,2.61630187656536,11.4236815021925,4.47188767870852,2.51975558925653,4.31257693094915,0,0,0,0,0,0,4.24864567805155,6.34789175126439,2.53532561402472,3.04960078862219,4.4464739805557,0.899899717281399,0,0.7104801149461,2.99600110518405,5.37905627450176,4.56234294157302,4.3201900266141,3.15487442027073,3.71346279724945,5.74258206474195,3.67472397644862,5.17565543498476,3.67687514644008,0,3.19218345212969,3.07213066512487,9.36392642884376,9.78917786545783,13.022834263919,0.837548997004143,0.56276261003168,1.68078072554491,5.89257170947335,6.54909731675874,1.4911955666024,3.40767869999328,9.14415877292105,0.869593466105033,0,0,0,0,0,0,1.02258193546835,1.03914401841148,0.35333957451034,8.59144860637751,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0.693941307064543,0.304465478312141,0.922461989024234,0.150722640552623,0.23517741427141,0.125666591329675,0,0,0,0.161766849947409,0,0,0,0.878342391034642,0.83778682725382,0,0,0,0,0.149790639404823,0,1.88481528169297,1.04294592115366,1.27857728665165,2.28566849015516,1.1356888414743,1.62942982160506,0,0.252722758433675,0.420883711772948,3.513251959993,1.60931473103431,2.34080768746954,1.35634336052144,1.29269348387523,1.2811372028485,1.3118241438362,0.258703370739016,0,0.378212160335639,0,0,0,0,0.205782136407943,1.19420560091096,0,0,0,1.03562886267751,0.703578179943289,0.36012412292203,0.946978942340841,0,0.462801338662135,0,0.804820204198858,0.116765342367169,0.329119699826961,0.656669856316381,0.243206428637567,0,0.219550115291051,0.134206418760372,1.47202963994889,6.07137213037778,0,0,1.06644125267617,0.928946687441754,0.128867461322093,0,0,0,0,0.164698954724011,0,0,0,0,0.216138049874694,0,2.0863469104839,1.02823661348756,1.1270773567308,0.610953983535943,0.581857461502877,0.350679099451593,0.505892296994058,0,0,0,0,1.00107063429656,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568474235311454,0.814824882210129,0.678980343100753,0,0.335012514883631,0.476087281772027,0.195133647857799,0.472905432318573,0.8858587585951,0.318909537314974,1.3109065177259,0.690739927463582,0.723245292907558,0,0,0,0,0.963303539926752,0.586058432961016,2.29508923527346,0,1.89304931649754,1.56175497718655,0,3.34556317133573,4.23317480756549,1.69845918473299,3.23848561339915,2.04579100537918,0.395287777946524,0.321321316421807,0.141940085208269,1.24645922567079,0.977321756121456,0.164970122972535,0,0.242780636154981,0,0,0,0.614870295887855,0,0.363533729477506,0,0,1.05418608574999,0,0,1.26042765821917,1.16422815404479,0.428674070063185,1.41872186913819,1.24858172321449,1.31639216481697,1.522324745573,0,0.21183207086382,0.441056796109924,0,0.161464426695906,0.241251699712623,0,0,0,0.370850604021019,0,0.206386867963223,0,0,0.136694227721025,0,0,0,0,0,6.48488786841327,3.45643094115643,2.37611749807963,1.46361807210128,1.74690050996942,1.61837215661785,1.73572257023205,1.04702376793612,0,0,0,0.149516546043979,0,0.194451188344048,0.129159823477731,0.168956125490778,0.117357238645754,0.2604087696879,0.104859344425711,0,0,0,0.608175645870493,0.308132871494482,0.389762468933385,0.358053391334963,0.198681354781265,0.120195449519969,0,0.100966449948148,0.0762068066549998,0,0,0.192423683280659,0,0.226730383615211,0,0,0,0.386379188064381,0.187682475451182,0,0,1.00314420807073,0.564751842617067,2.30162618253588,0,2.57779773515531,0,0.755393897389701,0.675022500231806,0.45032120322422,0,0.51776031175182,3.63255716544618,0.399024873401031,1.36586884603307,0.729320151204882,0.628839487883947,0.183843508450014,0,0.618105171716683,0.962757628775446,1.01078884705519,0,0.188626341386076,1.03005658216871,1.53660365771686,1.20614484806788,0.952587382566147,1.0429589335037,1.15745532278223,0.824171801606613,0.588795680537589,1.02860775715625,0.887379030796687,0.715308569841963,0.872078499793971,0.564656282491984,0.846146078916765,0.365855945745545,0.263069711437843,0.814824683075171,0,0.711810108745045,0.886540341380071,0,1.23949472948773,0.771626443924566,0.999242311751784,0.233931608445408,0.429742108096597,0.57386499620653,0.220591419119515,0 | |||
|short_description=p@chr13:78339611..78339623,- | |||
}} |
Latest revision as of 08:35, 6 August 2015
Short description: | p@chr13:78339611..78339623, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:78339611..78339623, - |
Coexpression cluster: | MCL_coexpression_mm9:2873 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.70e-33 | 44 |
neurectodermal cell | 1.70e-33 | 44 |
neural cell | 2.86e-32 | 43 |
neuron | 7.99e-22 | 33 |
neuronal stem cell | 7.99e-22 | 33 |
neuroblast | 7.99e-22 | 33 |
electrically signaling cell | 7.99e-22 | 33 |
CNS neuron (sensu Vertebrata) | 4.38e-17 | 23 |
neuroblast (sensu Vertebrata) | 4.38e-17 | 23 |
electrically responsive cell | 6.80e-17 | 39 |
electrically active cell | 6.80e-17 | 39 |
embryonic cell | 8.51e-16 | 70 |
migratory neural crest cell | 3.11e-11 | 10 |
neuron associated cell | 3.11e-11 | 10 |
glial cell (sensu Vertebrata) | 3.11e-11 | 10 |
neuron associated cell (sensu Vertebrata) | 3.11e-11 | 10 |
glial cell | 3.11e-11 | 10 |
glioblast | 3.11e-11 | 10 |
glioblast (sensu Vertebrata) | 3.11e-11 | 10 |
oligodendrocyte precursor cell | 3.31e-09 | 8 |
oligodendrocyte | 2.26e-07 | 6 |
macroglial cell | 2.26e-07 | 6 |
astrocyte | 2.26e-07 | 6 |
neuron of cerebral cortex | 3.06e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.38e-28 | 75 |
ectoderm-derived structure | 1.53e-27 | 95 |
ectoderm | 1.53e-27 | 95 |
presumptive ectoderm | 1.53e-27 | 95 |
central nervous system | 5.46e-26 | 73 |
neurectoderm | 1.98e-18 | 64 |
neural plate | 1.98e-18 | 64 |
presumptive neural plate | 1.98e-18 | 64 |
ecto-epithelium | 5.14e-17 | 73 |
regional part of nervous system | 8.29e-16 | 54 |
pre-chordal neural plate | 2.14e-14 | 49 |
neural tube | 2.57e-14 | 52 |
neural rod | 2.57e-14 | 52 |
future spinal cord | 2.57e-14 | 52 |
neural keel | 2.57e-14 | 52 |
gray matter | 1.21e-12 | 34 |
regional part of forebrain | 9.04e-12 | 39 |
forebrain | 9.04e-12 | 39 |
future forebrain | 9.04e-12 | 39 |
structure with developmental contribution from neural crest | 2.61e-11 | 92 |
anterior neural tube | 2.85e-11 | 40 |
regional part of brain | 5.72e-11 | 46 |
brain | 1.49e-10 | 47 |
future brain | 1.49e-10 | 47 |
brain grey matter | 1.09e-08 | 29 |
regional part of telencephalon | 1.09e-08 | 29 |
telencephalon | 1.09e-08 | 29 |
Ammon's horn | 3.43e-08 | 7 |
lobe parts of cerebral cortex | 3.43e-08 | 7 |
hippocampal formation | 3.43e-08 | 7 |
limbic system | 3.43e-08 | 7 |
limbic lobe | 3.43e-08 | 7 |
peripheral nervous system | 8.80e-07 | 11 |