FFCP PHASE1:Mm9::chr5:135028284..135028314,-: Difference between revisions
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{{FFCP|EntrezGene=269713|HGNC=|MCL_coexpression_id=3505|UniProt=Q9Z0H8|association_with_transcript=0bp_to_ENSMUST00000036999,ENSMUST00000100647,NM_001039162,NM_009990,uc008zwi.1,uc008zwj.1_5end|description=CAGE_peak_2_at_Clip2_5end|id=chr5:135028284..135028314,-|ontology_enrichment_celltype=CL:0000540!2.12e-16!33;CL:0000047!2.12e-16!33;CL:0000031!2.12e-16!33;CL:0000404!2.12e-16!33;CL:0000117!2.85e-14!23;CL:0000337!2.85e-14!23;CL:0000393!1.38e-12!39;CL:0000211!1.38e-12!39;CL:0002319!3.95e-12!43;CL:0000221!7.43e-12!44;CL:0000133!7.43e-12!44;CL:0000055!5.23e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.81e-16,33;CL:0000047,1.81e-16,33;CL:0000031,1.81e-16,33;CL:0000404,1.81e-16,33;CL:0000117,2.50e-14,23;CL:0000337,2.50e-14,23;CL:0000393,1.27e-12,39;CL:0000211,1.27e-12,39;CL:0002319,4.87e-12,43;CL:0000221,9.13e-12,44;CL:0000133,9.13e-12,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.27e-20!75;UBERON:0001016!1.27e-20!75;UBERON:0001017!5.11e-20!73;UBERON:0005743!5.11e-20!73;UBERON:0002346!1.32e-14!71;UBERON:0003075!1.32e-14!71;UBERON:0007284!1.32e-14!71;UBERON:0004121!2.17e-14!102;UBERON:0000924!2.17e-14!102;UBERON:0006601!2.17e-14!102;UBERON:0001049!7.74e-14!52;UBERON:0005068!7.74e-14!52;UBERON:0006241!7.74e-14!52;UBERON:0007135!7.74e-14!52;UBERON:0000955!4.43e-13!50;UBERON:0006238!4.43e-13!50;UBERON:0002020!5.38e-13!34;UBERON:0003056!5.48e-13!49;UBERON:0002616!1.70e-12!49;UBERON:0000033!2.57e-12!63;UBERON:0003080!6.81e-12!40;UBERON:0002780!2.38e-11!39;UBERON:0001890!2.38e-11!39;UBERON:0006240!2.38e-11!39;UBERON:0002791!1.12e-10!29;UBERON:0003528!1.12e-10!29;UBERON:0001893!1.12e-10!29;UBERON:0007811!3.48e-07!86;UBERON:0000153!4.33e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.47e-20,75;UBERON:0001017,5.92e-20,73;UBERON:0002346,3.55e-16,64;UBERON:0003075,3.55e-16,64;UBERON:0007284,3.55e-16,64;UBERON:0004121,3.64e-15,95;UBERON:0000924,3.64e-15,95;UBERON:0006601,3.64e-15,95;UBERON:0000073,8.08e-15,54;UBERON:0001049,7.68e-14,52;UBERON:0005068,7.68e-14,52;UBERON:0006241,7.68e-14,52;UBERON:0007135,7.68e-14,52;UBERON:0002020,5.49e-13,34;UBERON:0003056,6.16e-13,49;UBERON:0003080,6.92e-12,40;UBERON:0000955,9.02e-12,47;UBERON:0006238,9.02e-12,47;UBERON:0002780,2.42e-11,39;UBERON:0001890,2.42e-11,39;UBERON:0006240,2.42e-11,39;UBERON:0002616,3.34e-11,46;UBERON:0003528,1.16e-10,29;UBERON:0002791,1.16e-10,29;UBERON:0001893,1.16e-10,29;UBERON:0010371,1.59e-10,73;UBERON:0010314,1.20e-07,92|phase1_expression=2.40223270657191,5.93258192986914,4.54999239389536,5.14189159221611,5.50985302940982,5.70789524500425,3.73780224952841,3.35720640948098,2.956563165185,3.97909694747389,0.513653904676515,0.638177271962691,1.54080656938085,1.39872643870396,1.33243904726265,0.809901069559304,0,1.57731082679119,1.7824876368746,2.97072756258621,2.72138528483423,2.48227378002213,1.04479915655574,2.23989391910769,3.21172993494038,5.16808767703518,2.58457197695445,3.23206849028834,2.66032787238923,2.77233142735924,3.76941868114018,0,0.61506478758457,0,1.44425809875637,2.1610503896604,1.42918549383658,1.67412652294763,2.3440060335714,1.0470474879476,7.64700934440319,5.46436387966757,3.39857247121808,0.629484089877886,1.21652317463417,1.65192076945513,1.56478268869608,1.52617609466313,0.878744730937887,0.388859798148567,0.839918529752175,1.43752564364972,2.34895648480831,0.725362142011344,0.672187598284928,3.08711323243136,2.57880095944881,3.6097046459421,39.4517098676216,52.3701069479313,57.0448263155561,5.42151251310611,7.11435836888911,13.498495759221,22.7439263390404,19.1829631035447,11.3848041996994,5.76327457982332,13.6870288247191,15.3906769698127,15.1433972172995,9.42648248532552,6.40518768759679,31.2351537998133,26.2616590589968,46.8801581171111,27.5289702498472,7.53355294702608,9.98442466165583,49.9849030497435,37.967372095,43.2358097562111,11.1673199600552,12.380777420697,15.1270265299042,17.9723437138937,12.8134512719193,35.0430958151565,6.96680978665293,7.02815508993105,0.579728977403356,0.860423876981386,0,0,1.29955283489534,0,1.68533304158102,0.852151612890289,0,0.35333957451034,2.81686839553361,1.28326477414318,2.54805239706646,0,0.432982082022428,0.760079596425296,1.01104889002957,1.82694207550496,1.03575153458869,1.92974780784272,6.24547176358089,4.26251669636998,4.15107895060905,3.76806601381556,0.823120949949934,1.50799909595611,6.42706916109372,1.15679485535929,3.5384422077995,1.29413479957927,2.42925670306433,2.42437626567611,0,2.04946557908083,5.44561437714983,3.32094171771169,0.958520996047362,1.79970819298022,1.77898317902291,15.1288545798871,8.6925114535539,17.3403005915753,9.90798625095976,9.46147192122223,11.4283424507758,11.1946471516753,1.12023300235348,2.11491850037158,0.252722758433675,1.05220927943237,9.49879233627737,10.5754968039398,9.36323074987816,8.74087943447147,9.72921937863988,8.19927809823039,9.83868107877153,0.776110112217047,18.7544153851573,13.0483195315795,7.38994721488585,3.5071317188412,2.50242524303038,1.0447564995665,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:269713 | |||
|HGNC= | |||
|MCL_coexpression_id=3505 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9Z0H8 | |||
|association_with_transcript=0bp_to_ENSMUST00000036999,ENSMUST00000100647,NM_001039162,NM_009990,uc008zwi.1,uc008zwj.1_5end | |||
|cluster_id=chr5:135028284..135028314,- | |||
|description=CAGE_peak_2_at_Clip2_5end | |||
|id=chr5:135028284..135028314,- | |||
|ontology_enrichment_celltype=CL:0000540!2.12e-16!33;CL:0000047!2.12e-16!33;CL:0000031!2.12e-16!33;CL:0000404!2.12e-16!33;CL:0000117!2.85e-14!23;CL:0000337!2.85e-14!23;CL:0000393!1.38e-12!39;CL:0000211!1.38e-12!39;CL:0002319!3.95e-12!43;CL:0000221!7.43e-12!44;CL:0000133!7.43e-12!44;CL:0000055!5.23e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.81e-16,33;CL:0000047,1.81e-16,33;CL:0000031,1.81e-16,33;CL:0000404,1.81e-16,33;CL:0000117,2.50e-14,23;CL:0000337,2.50e-14,23;CL:0000393,1.27e-12,39;CL:0000211,1.27e-12,39;CL:0002319,4.87e-12,43;CL:0000221,9.13e-12,44;CL:0000133,9.13e-12,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.27e-20!75;UBERON:0001016!1.27e-20!75;UBERON:0001017!5.11e-20!73;UBERON:0005743!5.11e-20!73;UBERON:0002346!1.32e-14!71;UBERON:0003075!1.32e-14!71;UBERON:0007284!1.32e-14!71;UBERON:0004121!2.17e-14!102;UBERON:0000924!2.17e-14!102;UBERON:0006601!2.17e-14!102;UBERON:0001049!7.74e-14!52;UBERON:0005068!7.74e-14!52;UBERON:0006241!7.74e-14!52;UBERON:0007135!7.74e-14!52;UBERON:0000955!4.43e-13!50;UBERON:0006238!4.43e-13!50;UBERON:0002020!5.38e-13!34;UBERON:0003056!5.48e-13!49;UBERON:0002616!1.70e-12!49;UBERON:0000033!2.57e-12!63;UBERON:0003080!6.81e-12!40;UBERON:0002780!2.38e-11!39;UBERON:0001890!2.38e-11!39;UBERON:0006240!2.38e-11!39;UBERON:0002791!1.12e-10!29;UBERON:0003528!1.12e-10!29;UBERON:0001893!1.12e-10!29;UBERON:0007811!3.48e-07!86;UBERON:0000153!4.33e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.47e-20,75;UBERON:0001017,5.92e-20,73;UBERON:0002346,3.55e-16,64;UBERON:0003075,3.55e-16,64;UBERON:0007284,3.55e-16,64;UBERON:0004121,3.64e-15,95;UBERON:0000924,3.64e-15,95;UBERON:0006601,3.64e-15,95;UBERON:0000073,8.08e-15,54;UBERON:0001049,7.68e-14,52;UBERON:0005068,7.68e-14,52;UBERON:0006241,7.68e-14,52;UBERON:0007135,7.68e-14,52;UBERON:0002020,5.49e-13,34;UBERON:0003056,6.16e-13,49;UBERON:0003080,6.92e-12,40;UBERON:0000955,9.02e-12,47;UBERON:0006238,9.02e-12,47;UBERON:0002780,2.42e-11,39;UBERON:0001890,2.42e-11,39;UBERON:0006240,2.42e-11,39;UBERON:0002616,3.34e-11,46;UBERON:0003528,1.16e-10,29;UBERON:0002791,1.16e-10,29;UBERON:0001893,1.16e-10,29;UBERON:0010371,1.59e-10,73;UBERON:0010314,1.20e-07,92 | |||
|phase1_expression=2.40223270657191,5.93258192986914,4.54999239389536,5.14189159221611,5.50985302940982,5.70789524500425,3.73780224952841,3.35720640948098,2.956563165185,3.97909694747389,0.513653904676515,0.638177271962691,1.54080656938085,1.39872643870396,1.33243904726265,0.809901069559304,0,1.57731082679119,1.7824876368746,2.97072756258621,2.72138528483423,2.48227378002213,1.04479915655574,2.23989391910769,3.21172993494038,5.16808767703518,2.58457197695445,3.23206849028834,2.66032787238923,2.77233142735924,3.76941868114018,0,0.61506478758457,0,1.44425809875637,2.1610503896604,1.42918549383658,1.67412652294763,2.3440060335714,1.0470474879476,7.64700934440319,5.46436387966757,3.39857247121808,0.629484089877886,1.21652317463417,1.65192076945513,1.56478268869608,1.52617609466313,0.878744730937887,0.388859798148567,0.839918529752175,1.43752564364972,2.34895648480831,0.725362142011344,0.672187598284928,3.08711323243136,2.57880095944881,3.6097046459421,39.4517098676216,52.3701069479313,57.0448263155561,5.42151251310611,7.11435836888911,13.498495759221,22.7439263390404,19.1829631035447,11.3848041996994,5.76327457982332,13.6870288247191,15.3906769698127,15.1433972172995,9.42648248532552,6.40518768759679,31.2351537998133,26.2616590589968,46.8801581171111,27.5289702498472,7.53355294702608,9.98442466165583,49.9849030497435,37.967372095,43.2358097562111,11.1673199600552,12.380777420697,15.1270265299042,17.9723437138937,12.8134512719193,35.0430958151565,6.96680978665293,7.02815508993105,0.579728977403356,0.860423876981386,0,0,1.29955283489534,0,1.68533304158102,0.852151612890289,0,0.35333957451034,2.81686839553361,1.28326477414318,2.54805239706646,0,0.432982082022428,0.760079596425296,1.01104889002957,1.82694207550496,1.03575153458869,1.92974780784272,6.24547176358089,4.26251669636998,4.15107895060905,3.76806601381556,0.823120949949934,1.50799909595611,6.42706916109372,1.15679485535929,3.5384422077995,1.29413479957927,2.42925670306433,2.42437626567611,0,2.04946557908083,5.44561437714983,3.32094171771169,0.958520996047362,1.79970819298022,1.77898317902291,15.1288545798871,8.6925114535539,17.3403005915753,9.90798625095976,9.46147192122223,11.4283424507758,11.1946471516753,1.12023300235348,2.11491850037158,0.252722758433675,1.05220927943237,9.49879233627737,10.5754968039398,9.36323074987816,8.74087943447147,9.72921937863988,8.19927809823039,9.83868107877153,0.776110112217047,18.7544153851573,13.0483195315795,7.38994721488585,3.5071317188412,2.50242524303038,1.0447564995665,1.64625709126355,5.9710280045548,1.40442637462647,0.257347907114715,1.42081749697796,3.72826390563903,3.28336483973535,1.80062061461015,4.02466050494857,1.77087808572663,1.54267112887378,2.09280550275367,0.268273401399619,0.583826711835847,0.493679549740441,0.820837320395476,0.486412857275134,1.46199987425332,1.3173006917463,0.402619256281115,6.72927835405207,8.84979666461846,5.28670052774077,4.23120906661671,10.2378360256912,12.0763069367428,7.47431275668141,4.03367049246685,5.78182913996663,6.08722003560189,4.74529061544512,4.11747386810027,4.77536896720512,2.78539060857611,4.09424582950152,5.39291645192533,3.24207074812041,2.19055400579804,5.50036912763937,6.28366819353509,11.270773567308,5.90588850751411,4.65485969202302,2.59502533594179,3.09859031908861,1.77132177575523,1.255989822731,1.48076596706161,0,1.66845105716094,2.55526693647164,0.674586337154561,1.21716072833102,0.72353147925725,1.01850340712568,1.43848068725405,0.648540907100142,1.64736847912849,5.75072826109418,1.48856379067401,0.936113019343682,0.252578877947112,0.538192240565737,0.964887042726734,0.923765950833023,10.9905018826881,4.4000543639347,8.14776411720903,3.75504397261603,4.69017520837084,6.18913466303636,5.46374214001837,5.99013547603526,3.5434350343804,5.10255259703959,2.45794972073607,2.07221978239075,1.73578870297814,6.03165135757089,3.26343410291226,0.983528546038072,0.827810238914197,8.99083303931635,9.96299336033727,0.983609672260053,1.51482556322624,8.51872192423893,7.41833614163613,10.3403230911743,6.93009514062401,8.91194696329577,10.4738316391868,5.66734982344852,8.76767573733936,11.0680577825027,23.4564560987919,1.41940085208269,2.84904965867608,1.14020871547503,1.31976098378028,2.65490276679926,4.37005145078967,3.93020624054176,1.69744571780308,2.65771703592696,1.53717573971964,1.80899805217755,1.45413491791002,1.42598951353889,0.948110273807448,0,0,2.38307724027652,7.20244376125241,7.50280365939976,7.07312215604255,3.54680467284547,5.88617098086833,4.27827453565514,1.8267896946876,12.6722722354404,22.0305353698373,0.220528398054962,0.8244312647074,0.484393280087717,0.542816324353403,0.835606408021955,0.492422699235184,2.04036585640896,8.90041449650446,2.22132145037209,7.22354037871279,3.51869602002452,0.941842285023455,0.820165366326151,2.74533807847827,1.69978429993855,1.53946597556024,1.10559979043539,0,10.4390877881775,4.67634774391752,3.88819226958485,1.88179466413022,1.52853794622324,1.75323650300267,0.991841468704031,1.04702376793612,4.27729411862916,1.24267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| |||
|short_description=p2@Clip2 | |||
}} |
Revision as of 09:42, 6 August 2015
Short description: | p2@Clip2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Clip2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3505 |
Association with transcript: | 0bp_to_ENSMUST00000036999, ENSMUST00000100647, NM_001039162, NM_009990, uc008zwi.1, uc008zwj.1_5end |
EntrezGene: | 269713 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.81e-16 | 33 |
neuronal stem cell | 1.81e-16 | 33 |
neuroblast | 1.81e-16 | 33 |
electrically signaling cell | 1.81e-16 | 33 |
CNS neuron (sensu Vertebrata) | 2.50e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.50e-14 | 23 |
electrically responsive cell | 1.27e-12 | 39 |
electrically active cell | 1.27e-12 | 39 |
neural cell | 4.87e-12 | 43 |
ectodermal cell | 9.13e-12 | 44 |
neurectodermal cell | 9.13e-12 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.47e-20 | 75 |
central nervous system | 5.92e-20 | 73 |
neurectoderm | 3.55e-16 | 64 |
neural plate | 3.55e-16 | 64 |
presumptive neural plate | 3.55e-16 | 64 |
ectoderm-derived structure | 3.64e-15 | 95 |
ectoderm | 3.64e-15 | 95 |
presumptive ectoderm | 3.64e-15 | 95 |
regional part of nervous system | 8.08e-15 | 54 |
neural tube | 7.68e-14 | 52 |
neural rod | 7.68e-14 | 52 |
future spinal cord | 7.68e-14 | 52 |
neural keel | 7.68e-14 | 52 |
gray matter | 5.49e-13 | 34 |
pre-chordal neural plate | 6.16e-13 | 49 |
anterior neural tube | 6.92e-12 | 40 |
brain | 9.02e-12 | 47 |
future brain | 9.02e-12 | 47 |
regional part of forebrain | 2.42e-11 | 39 |
forebrain | 2.42e-11 | 39 |
future forebrain | 2.42e-11 | 39 |
regional part of brain | 3.34e-11 | 46 |
brain grey matter | 1.16e-10 | 29 |
regional part of telencephalon | 1.16e-10 | 29 |
telencephalon | 1.16e-10 | 29 |
ecto-epithelium | 1.59e-10 | 73 |
structure with developmental contribution from neural crest | 1.20e-07 | 92 |