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MCL coexpression mm9:376

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:127896024..127896045,+p3@Smarcc2
Mm9::chr11:116029452..116029519,-p1@Fbf1
Mm9::chr11:98590715..98590746,-p1@Med24
Mm9::chr12:103996146..103996164,+p2@Ubr7
Mm9::chr13:24893006..24893027,+p2@BC005537
Mm9::chr15:81230210..81230221,-p5@St13
Mm9::chr17:35301805..35301834,-p1@Prrc2a
Mm9::chr17:35301836..35301846,-p3@Prrc2a
Mm9::chr18:52927990..52928041,+p2@Sncaip
Mm9::chr2:166888481..166888548,-p3@Znfx1
Mm9::chr4:119088076..119088092,-p3@Ccdc30
Mm9::chr4:137549360..137549389,+p1@Eif4g3
Mm9::chr6:18798452..18798538,-p@chr6:18798452..18798538
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Mm9::chr7:13466514..13466553,+p1@Zfp128
Mm9::chr7:147222262..147222299,-p1@Tubgcp2
Mm9::chr8:125778047..125778068,-p3@1300018I17Rik
Mm9::chr8:23763866..23763877,-p2@Polb
Mm9::chr9:110019883..110019949,-p1@Dhx30
Mm9::chr9:55785981..55786009,-p2@Scaper
Mm9::chr9:60535684..60535753,-p1@Lrrc49


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005874microtubule0.0236413058708681
GO:0005819spindle0.0236413058708681
GO:0015630microtubule cytoskeleton0.0432354923872047
GO:0003890beta DNA polymerase activity0.0452172912017236
GO:0017125deoxycytidyl transferase activity0.0452172912017236



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)9.62e-1423
neuroblast (sensu Vertebrata)9.62e-1423
neuron1.18e-1233
neuronal stem cell1.18e-1233
neuroblast1.18e-1233
electrically signaling cell1.18e-1233
neural cell1.09e-0843
ectodermal cell1.34e-0844
neurectodermal cell1.34e-0844
electrically responsive cell1.64e-0839
electrically active cell1.64e-0839

Uber Anatomy
Ontology termp-valuen
neurectoderm9.17e-2764
neural plate9.17e-2764
presumptive neural plate9.17e-2764
central nervous system1.36e-2573
regional part of nervous system1.75e-2454
nervous system3.47e-2475
ectoderm-derived structure4.34e-2495
ectoderm4.34e-2495
presumptive ectoderm4.34e-2495
ecto-epithelium5.13e-2473
neural tube1.92e-2352
neural rod1.92e-2352
future spinal cord1.92e-2352
neural keel1.92e-2352
pre-chordal neural plate1.23e-2149
brain9.51e-2147
future brain9.51e-2147
regional part of brain4.23e-2046
anterior neural tube1.06e-1840
structure with developmental contribution from neural crest1.29e-1892
regional part of forebrain4.12e-1839
forebrain4.12e-1839
future forebrain4.12e-1839
gray matter5.34e-1734
brain grey matter1.79e-1429
regional part of telencephalon1.79e-1429
telencephalon1.79e-1429
cerebral cortex2.74e-1021
cerebral hemisphere2.74e-1021
pallium2.74e-1021
regional part of cerebral cortex6.88e-0817
multi-cellular organism9.69e-07333


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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