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MCL coexpression mm9:893

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:20641450..20641527,-p1@Aftph
Mm9::chr18:50190631..50190697,+p1@Tnfaip8
Mm9::chr18:50190724..50190742,+p8@Tnfaip8
Mm9::chr2:26758305..26758348,-p2@Surf6
Mm9::chr4:134708451..134708469,+p1@Runx3
Mm9::chr9:119892880..119892898,-p@chr9:119892880..119892898
-
Mm9::chrX:33431233..33431237,+p@chrX:33431233..33431237
+
Mm9::chrX:34529477..34529502,-p1@Sept6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0001652granular component0.0375280775762888



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
hemolymphoid system7.90e-1348
immune system7.90e-1348
hemopoietic organ7.73e-1229
immune organ7.73e-1229
hematopoietic system7.85e-1245
blood island7.85e-1245
mixed endoderm/mesoderm-derived structure4.22e-1035
pharynx1.19e-0924
upper respiratory tract1.19e-0924
chordate pharynx1.19e-0924
pharyngeal arch system1.19e-0924
pharyngeal region of foregut1.19e-0924
thymus2.45e-0923
neck2.45e-0923
respiratory system epithelium2.45e-0923
hemolymphoid system gland2.45e-0923
pharyngeal epithelium2.45e-0923
thymic region2.45e-0923
pharyngeal gland2.45e-0923
entire pharyngeal arch endoderm2.45e-0923
thymus primordium2.45e-0923
early pharyngeal endoderm2.45e-0923
gland of gut3.09e-0924
anterior region of body5.72e-0943
lateral plate mesoderm7.87e-0887
segment of respiratory tract2.54e-0727
respiratory system4.33e-0742
respiratory tract4.50e-0741
craniocervical region4.57e-0736
mesoderm6.09e-07120
mesoderm-derived structure6.09e-07120
presumptive mesoderm6.09e-07120


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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