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Coexpression cluster:C75

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Full id: C75_Eosinophils_Natural_CD8_Basophils_CD14_CD4_Peripheral



Phase1 CAGE Peaks

Hg19::chr10:11208955..11208966,-p@chr10:11208955..11208966
-
Hg19::chr10:121028416..121028441,-p@chr10:121028416..121028441
-
Hg19::chr10:126406690..126406702,-p@chr10:126406690..126406702
-
Hg19::chr10:15139747..15139782,+p5@RPP38
Hg19::chr10:22291850..22291865,+p@chr10:22291850..22291865
+
Hg19::chr10:3826854..3826861,-p@chr10:3826854..3826861
-
Hg19::chr10:43634395..43634406,-p@chr10:43634395..43634406
-
Hg19::chr11:102187923..102187941,-p@chr11:102187923..102187941
-
Hg19::chr11:30344926..30344961,+p@chr11:30344926..30344961
+
Hg19::chr11:58345474..58345491,-p3@LPXN
Hg19::chr11:62359322..62359334,+p@chr11:62359322..62359334
+
Hg19::chr11:65193698..65193705,-p@chr11:65193698..65193705
-
Hg19::chr11:82611610..82611625,+p@chr11:82611610..82611625
+
Hg19::chr12:10365911..10365915,-p@chr12:10365911..10365915
-
Hg19::chr12:10366003..10366014,-p@chr12:10366003..10366014
-
Hg19::chr12:104323304..104323327,+p@chr12:104323304..104323327
+
Hg19::chr12:106695681..106695697,-p@chr12:106695681..106695697
-
Hg19::chr12:25538587..25538605,+p@chr12:25538587..25538605
+
Hg19::chr12:46122540..46122548,-p@chr12:46122540..46122548
-
Hg19::chr12:49412525..49412539,-p2@PRKAG1
Hg19::chr12:57872183..57872194,-p16@ARHGAP9
Hg19::chr12:6641964..6641975,+p@chr12:6641964..6641975
+
Hg19::chr12:8179456..8179475,+p@chr12:8179456..8179475
+
Hg19::chr12:9913567..9913595,-p2@CD69
Hg19::chr13:50698542..50698555,-p@chr13:50698542..50698555
-
Hg19::chr13:50698573..50698596,-p@chr13:50698573..50698596
-
Hg19::chr14:23388740..23388761,+p2@ENST00000424245
Hg19::chr14:52313371..52313386,-p@chr14:52313371..52313386
-
Hg19::chr14:52313984..52314002,-p@chr14:52313984..52314002
-
Hg19::chr14:52327208..52327225,-p@chr14:52327208..52327225
-
Hg19::chr14:52327712..52327727,+p15@GNG2
Hg19::chr14:52333145..52333155,-p@chr14:52333145..52333155
-
Hg19::chr14:52333334..52333348,+p@chr14:52333334..52333348
+
Hg19::chr14:69262473..69262484,-p@chr14:69262473..69262484
-
Hg19::chr14:74227209..74227225,+p@chr14:74227209..74227225
+
Hg19::chr14:75726033..75726042,+p2@ENST00000555909
Hg19::chr14:75726044..75726086,+p1@ENST00000555909
Hg19::chr14:75741792..75741807,+p@chr14:75741792..75741807
+
Hg19::chr14:75744973..75744991,-p@chr14:75744973..75744991
-
Hg19::chr14:94429517..94429532,-p@chr14:94429517..94429532
-
Hg19::chr15:55582399..55582403,+p@chr15:55582399..55582403
+
Hg19::chr15:75746723..75746749,+p@chr15:75746723..75746749
+
Hg19::chr16:15737233..15737254,+p3@NDE1
Hg19::chr16:15766837..15766840,-p@chr16:15766837..15766840
-
Hg19::chr16:27379190..27379201,+p@chr16:27379190..27379201
+
Hg19::chr16:28835627..28835647,-p@chr16:28835627..28835647
-
Hg19::chr16:85063118..85063124,-p@chr16:85063118..85063124
-
Hg19::chr17:33415837..33415862,-p@chr17:33415837..33415862
-
Hg19::chr17:38374969..38374995,-p@chr17:38374969..38374995
-
Hg19::chr17:38478742..38478783,-p@chr17:38478742..38478783
-
Hg19::chr17:38479445..38479465,+p@chr17:38479445..38479465
+
Hg19::chr17:38480295..38480325,-p@chr17:38480295..38480325
-
Hg19::chr17:38480329..38480352,-p@chr17:38480329..38480352
-
Hg19::chr17:38480488..38480504,+p@chr17:38480488..38480504
+
Hg19::chr17:38482456..38482468,-p@chr17:38482456..38482468
-
Hg19::chr17:56422008..56422024,+p@chr17:56422008..56422024
+
Hg19::chr17:62971940..62971944,-p13@AMZ2P1
Hg19::chr17:62972295..62972313,+p@chr17:62972295..62972313
+
Hg19::chr17:62982601..62982604,-p@chr17:62982601..62982604
-
Hg19::chr17:66243861..66243874,+p7@AMZ2
Hg19::chr17:66508421..66508435,-p@chr17:66508421..66508435
-
Hg19::chr17:74712523..74712551,+p@chr17:74712523..74712551
+
Hg19::chr17:74721485..74721489,-p@chr17:74721485..74721489
-
Hg19::chr17:74721959..74721969,-p5@JMJD6
Hg19::chr17:7738759..7738770,-p@chr17:7738759..7738770
-
Hg19::chr17:7739159..7739197,+p@chr17:7739159..7739197
+
Hg19::chr17:7744830..7744841,-p@chr17:7744830..7744841
-
Hg19::chr17:7746957..7746964,-p@chr17:7746957..7746964
-
Hg19::chr17:7747314..7747325,-p@chr17:7747314..7747325
-
Hg19::chr17:8060155..8060178,+p@chr17:8060155..8060178
+
Hg19::chr17:8857783..8857803,-p@chr17:8857783..8857803
-
Hg19::chr19:10380695..10380713,+p@chr19:10380695..10380713
+
Hg19::chr19:13950145..13950160,+p@chr19:13950145..13950160
+
Hg19::chr19:13950605..13950657,+p@chr19:13950605..13950657
+
Hg19::chr19:13950775..13950788,+p@chr19:13950775..13950788
+
Hg19::chr19:13957681..13957691,+p@chr19:13957681..13957691
+
Hg19::chr19:13957704..13957725,+p@chr19:13957704..13957725
+
Hg19::chr19:13957738..13957749,+p@chr19:13957738..13957749
+
Hg19::chr19:14248044..14248065,+p@chr19:14248044..14248065
+
Hg19::chr19:14493041..14493072,+p@chr19:14493041..14493072
+
Hg19::chr19:16435247..16435259,-p@chr19:16435247..16435259
-
Hg19::chr19:16435475..16435483,-p@chr19:16435475..16435483
-
Hg19::chr19:18058552..18058569,-p@chr19:18058552..18058569
-
Hg19::chr19:18111669..18111677,-p@chr19:18111669..18111677
-
Hg19::chr19:39894786..39894801,+p@chr19:39894786..39894801
+
Hg19::chr19:41857636..41857667,+p@chr19:41857636..41857667
+
Hg19::chr19:45954356..45954397,+p@chr19:45954356..45954397
+
Hg19::chr19:45972508..45972531,-p@chr19:45972508..45972531
-
Hg19::chr19:54369656..54369673,+p16@MYADM
Hg19::chr19:54371876..54371893,-p@chr19:54371876..54371893
-
Hg19::chr19:54372356..54372368,-p3@ENST00000455835
Hg19::chr19:54372480..54372496,-p1@ENST00000455835
Hg19::chr19:54372737..54372755,-p5@ENST00000455835
Hg19::chr19:56146421..56146438,+p13@ZNF580
p4@ZNF581
Hg19::chr19:59085054..59085070,+p@chr19:59085054..59085070
+
Hg19::chr19:59085158..59085163,+p@chr19:59085158..59085163
+
Hg19::chr1:114472866..114472877,+p10@HIPK1
Hg19::chr1:114472905..114472919,+p9@HIPK1
Hg19::chr1:12239142..12239152,-p@chr1:12239142..12239152
-
Hg19::chr1:14027671..14027706,+p@chr1:14027671..14027706
+
Hg19::chr1:151029536..151029568,-p@chr1:151029536..151029568
-
Hg19::chr1:15736115..15736135,+p3@EFHD2
Hg19::chr1:159880335..159880355,-p1@HSPC081
Hg19::chr1:159893511..159893537,-p4@TAGLN2
Hg19::chr1:159893654..159893709,+p@chr1:159893654..159893709
+
Hg19::chr1:159893714..159893728,+p@chr1:159893714..159893728
+
Hg19::chr1:159894581..159894596,+p@chr1:159894581..159894596
+
Hg19::chr1:203296513..203296536,-p@chr1:203296513..203296536
-
Hg19::chr1:204380854..204380865,-p3@PPP1R15B
Hg19::chr1:212769621..212769628,-p@chr1:212769621..212769628
-
Hg19::chr1:2165919..2165932,-p@chr1:2165919..2165932
-
Hg19::chr1:2166007..2166047,+p@chr1:2166007..2166047
+
Hg19::chr1:234747310..234747334,-p@chr1:234747310..234747334
-
Hg19::chr1:234748505..234748539,-p@chr1:234748505..234748539
-
Hg19::chr1:235490580..235490602,+p10@GGPS1
Hg19::chr1:236029492..236029504,+p@chr1:236029492..236029504
+
Hg19::chr1:236029525..236029533,+p@chr1:236029525..236029533
+
Hg19::chr1:236030037..236030051,-p@chr1:236030037..236030051
-
Hg19::chr1:236030103..236030119,-p@chr1:236030103..236030119
-
Hg19::chr1:236040072..236040107,+p@chr1:236040072..236040107
+
Hg19::chr1:245026904..245026918,+p@chr1:245026904..245026918
+
Hg19::chr1:36689679..36689717,-p@chr1:36689679..36689717
-
Hg19::chr20:23331547..23331558,+p3@NXT1
Hg19::chr20:4795070..4795106,+p@chr20:4795070..4795106
+
Hg19::chr20:56882271..56882292,+p@chr20:56882271..56882292
+
Hg19::chr20:62527815..62527818,-p@chr20:62527815..62527818
-
Hg19::chr21:38739768..38739774,-p@chr21:38739768..38739774
-
Hg19::chr21:43640151..43640168,-p@chr21:43640151..43640168
-
Hg19::chr21:43640820..43640830,+p@chr21:43640820..43640830
+
Hg19::chr22:31686994..31687005,+p@chr22:31686994..31687005
+
Hg19::chr22:31687044..31687060,+p@chr22:31687044..31687060
+
Hg19::chr22:36761081..36761108,-p36@MYH9
Hg19::chr22:47131164..47131179,+p@chr22:47131164..47131179
+
Hg19::chr22:47158351..47158356,-p@chr22:47158351..47158356
-
Hg19::chr2:136500212..136500216,-p1@AK056055
Hg19::chr2:136874641..136874658,+p@chr2:136874641..136874658
+
Hg19::chr2:145273256..145273269,-p@chr2:145273256..145273269
-
Hg19::chr2:157190082..157190099,+p@chr2:157190082..157190099
+
Hg19::chr2:178078011..178078032,-p@chr2:178078011..178078032
-
Hg19::chr2:178128711..178128729,+p1@ENST00000428541
Hg19::chr2:178128773..178128788,+p3@ENST00000428541
Hg19::chr2:198299998..198300018,+p@chr2:198299998..198300018
+
Hg19::chr2:198317813..198317851,-p@chr2:198317813..198317851
-
Hg19::chr2:208393865..208393883,+p@chr2:208393865..208393883
+
Hg19::chr2:219433975..219433993,-p@chr2:219433975..219433993
-
Hg19::chr2:238582192..238582211,+p@chr2:238582192..238582211
+
Hg19::chr2:238582238..238582251,+p@chr2:238582238..238582251
+
Hg19::chr2:238583492..238583501,-p@chr2:238583492..238583501
-
Hg19::chr2:238596480..238596487,-p@chr2:238596480..238596487
-
Hg19::chr2:30370686..30370701,-p@chr2:30370686..30370701
-
Hg19::chr2:74685041..74685060,-p@chr2:74685041..74685060
-
Hg19::chr2:7889352..7889371,-p@chr2:7889352..7889371
-
Hg19::chr3:119013024..119013027,+p12@ARHGAP31
Hg19::chr3:150126904..150126958,+p7@TSC22D2
Hg19::chr3:156878100..156878138,+p@chr3:156878100..156878138
+
Hg19::chr3:177077886..177077897,+p@chr3:177077886..177077897
+
Hg19::chr3:177077917..177077934,+p@chr3:177077917..177077934
+
Hg19::chr3:39093904..39093915,-p@chr3:39093904..39093915
-
Hg19::chr3:5018959..5018971,+p@chr3:5018959..5018971
+
Hg19::chr3:5019050..5019076,+p@chr3:5019050..5019076
+
Hg19::chr3:5019230..5019241,+p@chr3:5019230..5019241
+
Hg19::chr3:52719543..52719576,+p12@GNL3
Hg19::chr3:57583545..57583570,+p@chr3:57583545..57583570
+
Hg19::chr4:186346970..186346995,-p@chr4:186346970..186346995
-
Hg19::chr4:26320869..26320880,+p30@RBPJ
Hg19::chr4:26320884..26320897,+p26@RBPJ
Hg19::chr4:54930230..54930236,+p@chr4:54930230..54930236
+
Hg19::chr4:78783292..78783310,+p4@MRPL1
Hg19::chr5:106812720..106812731,-p@chr5:106812720..106812731
-
Hg19::chr5:106812744..106812762,-p@chr5:106812744..106812762
-
Hg19::chr5:107717914..107717949,-p14@FBXL17
Hg19::chr5:108745177..108745194,+p@chr5:108745177..108745194
+
Hg19::chr5:108745198..108745212,+p@chr5:108745198..108745212
+
Hg19::chr5:133984112..133984120,-p@chr5:133984112..133984120
-
Hg19::chr5:142382063..142382078,-p@chr5:142382063..142382078
-
Hg19::chr5:169720333..169720354,-p@chr5:169720333..169720354
-
Hg19::chr5:171434015..171434056,+p@chr5:171434015..171434056
+
Hg19::chr5:171606085..171606099,-p@chr5:171606085..171606099
-
Hg19::chr5:172191555..172191559,-p@chr5:172191555..172191559
-
Hg19::chr5:176854406..176854415,+p@chr5:176854406..176854415
+
Hg19::chr5:179248726..179248764,-p@chr5:179248726..179248764
-
Hg19::chr5:180587568..180587583,-p@chr5:180587568..180587583
-
Hg19::chr5:180587605..180587618,-p@chr5:180587605..180587618
-
Hg19::chr5:39073411..39073429,-p@chr5:39073411..39073429
-
Hg19::chr5:49964040..49964073,+p@chr5:49964040..49964073
+
Hg19::chr5:86708579..86708607,-p4@CCNH
Hg19::chr5:86708610..86708627,-p3@CCNH
Hg19::chr5:98263084..98263098,+p@chr5:98263084..98263098
+
Hg19::chr5:98263147..98263158,+p@chr5:98263147..98263158
+
Hg19::chr6:109330919..109330965,+p2@AF086525
Hg19::chr6:12008838..12008851,-p@chr6:12008838..12008851
-
Hg19::chr6:143268479..143268502,-p@chr6:143268479..143268502
-
Hg19::chr6:144472464..144472478,-p@chr6:144472464..144472478
-
Hg19::chr6:24720572..24720599,+p@chr6:24720572..24720599
+
Hg19::chr6:28105369..28105380,-p3@uc003nkl.1
p3@uc010jqw.1
p5@uc003nkk.1
Hg19::chr6:30544083..30544085,+p@chr6:30544083..30544085
+
Hg19::chr6:33281969..33281982,+p@chr6:33281969..33281982
+
Hg19::chr6:33281983..33281992,+p@chr6:33281983..33281992
+
Hg19::chr6:41041625..41041639,+p@chr6:41041625..41041639
+
Hg19::chr7:104624418..104624476,+p@chr7:104624418..104624476
+
Hg19::chr7:104624577..104624592,-p2@uc003vcj.1
Hg19::chr7:104652906..104652924,-p@chr7:104652906..104652924
-
Hg19::chr7:104652927..104652977,-p@chr7:104652927..104652977
-
Hg19::chr7:104653833..104653859,+p@chr7:104653833..104653859
+
Hg19::chr7:104654708..104654711,+p6@MLL5
Hg19::chr7:106808946..106808961,-p@chr7:106808946..106808961
-
Hg19::chr7:108166913..108166931,+p@chr7:108166913..108166931
+
Hg19::chr7:139025909..139025927,+p4@C7orf55
p7@LUC7L2
Hg19::chr7:140623930..140623946,-p@chr7:140623930..140623946
-
Hg19::chr7:140623950..140623972,-p@chr7:140623950..140623972
-
Hg19::chr7:140624224..140624251,+p@chr7:140624224..140624251
+
Hg19::chr7:155090681..155090698,-p@chr7:155090681..155090698
-
Hg19::chr7:32931882..32931906,+p@chr7:32931882..32931906
+
Hg19::chr7:39989946..39989977,+p6@CDK13
Hg19::chr7:43688635..43688639,+p@chr7:43688635..43688639
+
Hg19::chr7:44085622..44085636,+p@chr7:44085622..44085636
+
Hg19::chr7:44924238..44924257,+p2@BC047792
Hg19::chr7:66119277..66119290,-p@chr7:66119277..66119290
-
Hg19::chr7:98978644..98978675,-p@chr7:98978644..98978675
-
Hg19::chr8:103424565..103424568,+p@chr8:103424565..103424568
+
Hg19::chr8:123793773..123793791,-p@chr8:123793773..123793791
-
Hg19::chr8:123793793..123793848,-p@chr8:123793793..123793848
-
Hg19::chr8:146103749..146103775,-p@chr8:146103749..146103775
-
Hg19::chr8:29939997..29940018,+p@chr8:29939997..29940018
+
Hg19::chr8:29940023..29940034,+p@chr8:29940023..29940034
+
Hg19::chr9:102581971..102581984,+p@chr9:102581971..102581984
+
Hg19::chr9:102582557..102582589,+p@chr9:102582557..102582589
+
Hg19::chr9:102582592..102582608,+p@chr9:102582592..102582608
+
Hg19::chr9:102584935..102584960,-p@chr9:102584935..102584960
-
Hg19::chr9:132176261..132176274,+p@chr9:132176261..132176274
+
Hg19::chr9:132388566..132388581,+p2@METTL11A
Hg19::chr9:132650191..132650215,+p@chr9:132650191..132650215
+
Hg19::chr9:136009131..136009140,-p@chr9:136009131..136009140
-
Hg19::chr9:139797163..139797174,+p@chr9:139797163..139797174
+
Hg19::chr9:88356112..88356128,+p@chr9:88356112..88356128
+
Hg19::chrX:106954324..106954343,-p@chrX:106954324..106954343
-
Hg19::chrX:106954508..106954537,+p@chrX:106954508..106954537
+
Hg19::chrX:15354246..15354257,-p@chrX:15354246..15354257
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
6.83169628775205e-050.0432446375014705384Ribosome biogenesis in eukaryotes (KEGG):03008



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
leukocyte2.51e-49140
hematopoietic stem cell1.27e-45172
angioblastic mesenchymal cell1.27e-45172
hematopoietic cell1.57e-42182
hematopoietic oligopotent progenitor cell1.48e-41165
hematopoietic multipotent progenitor cell1.48e-41165
hematopoietic lineage restricted progenitor cell3.35e-39124
nongranular leukocyte2.70e-37119
CD14-positive, CD16-negative classical monocyte1.48e-2342
classical monocyte9.19e-2245
lymphocyte2.27e-2153
common lymphoid progenitor2.27e-2153
lymphoid lineage restricted progenitor cell3.20e-2152
myeloid leukocyte3.61e-2176
myeloid cell7.62e-20112
common myeloid progenitor7.62e-20112
granulocyte monocyte progenitor cell5.64e-1871
myeloid lineage restricted progenitor cell9.72e-1770
macrophage dendritic cell progenitor2.47e-1565
monopoietic cell2.33e-1463
monocyte2.33e-1463
monoblast2.33e-1463
promonocyte2.33e-1463
mesenchymal cell8.45e-13358
connective tissue cell2.31e-12365
T cell3.80e-1125
pro-T cell3.80e-1125
motile cell1.67e-10390
mature alpha-beta T cell1.97e-1018
alpha-beta T cell1.97e-1018
immature T cell1.97e-1018
mature T cell1.97e-1018
immature alpha-beta T cell1.97e-1018
lymphocyte of B lineage2.04e-0924
pro-B cell2.04e-0924
B cell2.55e-0714
intermediate monocyte9.78e-079
CD14-positive, CD16-positive monocyte9.78e-079
Uber Anatomy
Ontology termp-valuen
hematopoietic system1.97e-24102
blood island1.97e-24102
hemolymphoid system1.89e-20112
bone marrow4.09e-1780
bone element5.92e-1686
connective tissue4.43e-12375
immune system1.26e-11115
skeletal element2.26e-10101
skeletal system2.26e-10101
blood1.58e-0715
haemolymphatic fluid1.58e-0715
organism substance1.58e-0715


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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