FF:10017-101C8: Difference between revisions

Latest revision as of 12:14, 3 June 2020

Name:	kidney, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10622
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	60,62,63 years old adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -8
catalog number	Cat:AM6000 Lot:0910061 -8
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005317

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10622		CAGE		DRX008670		DRR009542

Accession ID Hg19

Library id		BAM		CTSS
CNhs10622		DRZ000967		DRZ002352

Accession ID Hg38

Library id		BAM		CTSS
CNhs10622		DRZ012317		DRZ013702

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.103
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.326
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0329
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.271
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.00615
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0329
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0.424
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0636
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.079
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0329
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.37
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.252
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.259
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.362
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.65
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0129
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.00138
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0922
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0329
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0329
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.692
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0329
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.118
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0525
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.168
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0403
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0419
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0329
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0329
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0.144
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.542
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.191
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0329
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.21
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0329
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0329
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.0329
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0.844
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0922
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0779
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0329
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10622

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.052
MA0003.1	MA0003.1	0.192
MA0004.1	MA0004.1	0.323
MA0006.1	MA0006.1	0.0422
MA0007.1	MA0007.1	0.275
MA0009.1	MA0009.1	0.666
MA0014.1	MA0014.1	0.172
MA0017.1	MA0017.1	4.21675e-11
MA0018.2	MA0018.2	0.0559
MA0019.1	MA0019.1	0.0222
MA0024.1	MA0024.1	0.00712
MA0025.1	MA0025.1	0.698
MA0027.1	MA0027.1	0.474
MA0028.1	MA0028.1	0.0623
MA0029.1	MA0029.1	0.258
MA0030.1	MA0030.1	0.0586
MA0031.1	MA0031.1	0.266
MA0035.2	MA0035.2	0.794
MA0038.1	MA0038.1	0.107
MA0039.2	MA0039.2	0.0431
MA0040.1	MA0040.1	0.682
MA0041.1	MA0041.1	0.297
MA0042.1	MA0042.1	0.852
MA0043.1	MA0043.1	0.16
MA0046.1	MA0046.1	8.71508e-124
MA0047.2	MA0047.2	0.93
MA0048.1	MA0048.1	0.0134
MA0050.1	MA0050.1	0.31
MA0051.1	MA0051.1	0.178
MA0052.1	MA0052.1	0.551
MA0055.1	MA0055.1	0.0803
MA0057.1	MA0057.1	0.486
MA0058.1	MA0058.1	0.535
MA0059.1	MA0059.1	0.0251
MA0060.1	MA0060.1	0.51
MA0061.1	MA0061.1	2.37833e-4
MA0062.2	MA0062.2	0.01
MA0065.2	MA0065.2	0.124
MA0066.1	MA0066.1	0.386
MA0067.1	MA0067.1	0.00458
MA0068.1	MA0068.1	0.003
MA0069.1	MA0069.1	0.13
MA0070.1	MA0070.1	0.758
MA0071.1	MA0071.1	0.423
MA0072.1	MA0072.1	0.466
MA0073.1	MA0073.1	0.983
MA0074.1	MA0074.1	0.446
MA0076.1	MA0076.1	0.133
MA0077.1	MA0077.1	0.53
MA0078.1	MA0078.1	0.00218
MA0079.2	MA0079.2	0.0555
MA0080.2	MA0080.2	0.233
MA0081.1	MA0081.1	0.147
MA0083.1	MA0083.1	0.869
MA0084.1	MA0084.1	0.54
MA0087.1	MA0087.1	0.111
MA0088.1	MA0088.1	0.21
MA0090.1	MA0090.1	0.0047
MA0091.1	MA0091.1	0.572
MA0092.1	MA0092.1	0.785
MA0093.1	MA0093.1	0.389
MA0099.2	MA0099.2	1.24127e-13
MA0100.1	MA0100.1	0.108
MA0101.1	MA0101.1	0.00673
MA0102.2	MA0102.2	0.939
MA0103.1	MA0103.1	0.00227
MA0104.2	MA0104.2	0.00118
MA0105.1	MA0105.1	6.69791e-6
MA0106.1	MA0106.1	0.192
MA0107.1	MA0107.1	0.0108
MA0108.2	MA0108.2	1.31865e-5
MA0111.1	MA0111.1	0.348
MA0112.2	MA0112.2	0.713
MA0113.1	MA0113.1	0.0935
MA0114.1	MA0114.1	1.60594e-8
MA0115.1	MA0115.1	0.0043
MA0116.1	MA0116.1	0.0282
MA0117.1	MA0117.1	0.0846
MA0119.1	MA0119.1	0.274
MA0122.1	MA0122.1	0.226
MA0124.1	MA0124.1	0.769
MA0125.1	MA0125.1	0.253
MA0131.1	MA0131.1	0.378
MA0135.1	MA0135.1	0.116
MA0136.1	MA0136.1	0.217
MA0137.2	MA0137.2	4.85894e-5
MA0138.2	MA0138.2	0.522
MA0139.1	MA0139.1	0.612
MA0140.1	MA0140.1	0.162
MA0141.1	MA0141.1	0.0591
MA0142.1	MA0142.1	0.912
MA0143.1	MA0143.1	0.392
MA0144.1	MA0144.1	0.016
MA0145.1	MA0145.1	0.00107
MA0146.1	MA0146.1	0.673
MA0147.1	MA0147.1	2.36174e-4
MA0148.1	MA0148.1	0.285
MA0149.1	MA0149.1	0.312
MA0150.1	MA0150.1	0.00707
MA0152.1	MA0152.1	0.106
MA0153.1	MA0153.1	7.50836e-70
MA0154.1	MA0154.1	0.151
MA0155.1	MA0155.1	0.559
MA0156.1	MA0156.1	0.0721
MA0157.1	MA0157.1	0.763
MA0159.1	MA0159.1	0.143
MA0160.1	MA0160.1	0.362
MA0162.1	MA0162.1	0.804
MA0163.1	MA0163.1	2.26051e-5
MA0164.1	MA0164.1	0.147
MA0258.1	MA0258.1	0.44
MA0259.1	MA0259.1	0.0227

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10622

Novel motif	Logo	P-value
1	1	0.192
10	10	0.0493
100	100	0.618
101	101	0.335
102	102	0.122
103	103	0.147
104	104	0.463
105	105	0.937
106	106	0.873
107	107	0.194
108	108	0.998
109	109	0.1
11	11	0.155
110	110	0.0925
111	111	0.0167
112	112	0.443
113	113	0.779
114	114	0.0136
115	115	0.827
116	116	0.156
117	117	0.00966
118	118	0.162
119	119	0.635
12	12	0.968
120	120	0.144
121	121	0.415
122	122	0.423
123	123	0.0049
124	124	0.595
125	125	8.94152e-4
126	126	0.175
127	127	0.122
128	128	0.85
129	129	0.688
13	13	0.327
130	130	0.437
131	131	0.548
132	132	0.626
133	133	0.269
134	134	0.573
135	135	0.397
136	136	0.651
137	137	0.377
138	138	0.513
139	139	0.169
14	14	0.621
140	140	0.657
141	141	0.154
142	142	0.998
143	143	0.00967
144	144	0.364
145	145	0.823
146	146	0.0614
147	147	0.776
148	148	0.44
149	149	0.387
15	15	0.136
150	150	0.614
151	151	0.713
152	152	0.126
153	153	0.402
154	154	0.173
155	155	0.799
156	156	0.473
157	157	0.468
158	158	0.173
159	159	0.643
16	16	0.877
160	160	0.286
161	161	0.251
162	162	0.622
163	163	0.791
164	164	0.0548
165	165	0.402
166	166	0.433
167	167	0.0321
168	168	0.249
169	169	0.472
17	17	0.446
18	18	0.00109
19	19	0.492
2	2	0.172
20	20	0.305
21	21	0.0795
22	22	0.79
23	23	0.85
24	24	0.618
25	25	0.41
26	26	0.137
27	27	0.729
28	28	0.924
29	29	0.0137
3	3	0.147
30	30	0.0309
31	31	0.939
32	32	0.023
33	33	0.845
34	34	0.416
35	35	0.132
36	36	0.0226
37	37	0.305
38	38	0.757
39	39	0.213
4	4	0.217
40	40	0.313
41	41	0.0654
42	42	0.153
43	43	0.336
44	44	0.534
45	45	0.187
46	46	0.137
47	47	0.386
48	48	0.574
49	49	0.0514
5	5	0.417
50	50	0.779
51	51	0.402
52	52	0.0965
53	53	0.572
54	54	0.798
55	55	0.989
56	56	0.741
57	57	0.197
58	58	0.862
59	59	0.831
6	6	0.231
60	60	0.728
61	61	0.737
62	62	0.459
63	63	0.611
64	64	0.254
65	65	0.963
66	66	0.317
67	67	0.103
68	68	0.263
69	69	0.632
7	7	0.789
70	70	0.122
71	71	0.0219
72	72	0.833
73	73	0.775
74	74	0.614
75	75	0.0183
76	76	0.0125
77	77	0.0537
78	78	0.451
79	79	0.0451
8	8	0.418
80	80	0.103
81	81	0.262
82	82	0.878
83	83	0.991
84	84	0.326
85	85	0.682
86	86	0.571
87	87	0.648
88	88	0.753
89	89	0.855
9	9	0.517
90	90	0.549
91	91	0.373
92	92	0.678
93	93	0.273
94	94	0.0376
95	95	0.189
96	96	0.825
97	97	0.421
98	98	0.32
99	99	0.158

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10622

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010017 human kidney - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002113 (kidney)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010017 (human kidney - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005317
+|accession_numbers=CAGE;DRX008670;DRR009542;DRZ000967;DRZ002352;DRZ012317;DRZ013702
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002113,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.40!248.63!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.09!121.68!HNF1B;;chr2:122042770..122042785,-!p1@TFCP2L1!2.08!119.39!TFCP2L1;;chr1:201979743..201979762,+!p1@ELF3!1.94!85.66!ELF3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.99!POU3F3;;chr6:134210243..134210257,+!p1@TCF21!1.77!57.69!TCF21;;chr10:119302232..119302265,+!p1@EMX2!1.66!44.84!EMX2;;chr12:100897130..100897149,+!p3@NR1H4!1.61!39.48!NR1H4;;chr20:43029862..43029900,+!p1@HNF4A!1.56!35.46!HNF4A;;chr11:34642612..34642646,+!p1@EHF!1.53!32.63!EHF;;chr1:40105299..40105326,-!p1@HEYL!1.51!31.36!HEYL;;chr1:151804244..151804310,-!p1@RORC!1.47!28.61!RORC;;chr5:169532896..169532904,+!p1@FOXI1!1.45!27.35!FOXI1;;chr7:73038839..73038862,-!p1@MLXIPL!1.44!26.32!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.43!25.77!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.77!ZBED1;;chr20:62680984..62680999,-!p1@SOX18!1.42!33.26!SOX18;;chr19:12348371..12348386,-!p5@ZNF44!1.42!25.53!ZNF44;;chr21:39870339..39870443,-!p1@ERG!1.42!25.22!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.41!28.84!MECOM;;chr7:27205136..27205164,-!p1@HOXA9!1.40!24.35!HOXA9;;chr13:72441315..72441454,-!p1@DACH1!1.35!41.92!DACH1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.34!20.96!HOXC5;;chr2:242556880..242556899,-!p5@THAP4!1.34!20.96!THAP4;;chr11:16419037..16419064,-!p3@SOX6!1.34!20.80!SOX6;;chr16:79634595..79634620,-!p2@MAF!1.33!36.41!MAF;;chr3:69915385..69915438,+!p3@MITF!1.33!20.25!MITF;;chr3:141043020..141043049,+!p17@ZBTB38!1.32!20.10!ZBTB38;;chr16:79634624..79634642,-!p1@MAF!1.31!74.47!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.27!25.22!ZBTB16;;chr3:126076242..126076257,-!p1@KLF15!1.27!22.14!KLF15;;chr10:119302268..119302282,+!p4@EMX2!1.27!17.49!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.26!17.26!PAX2;;chr2:176994408..176994492,+!p1@HOXD8!1.26!17.10!HOXD8;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.10!HOXB6;;chr10:102505327..102505344,+!p1@PAX2!1.26!17.02!PAX2;;chr11:47400078..47400106,-!p1@SPI1!1.25!16.71!SPI1;;chr17:46675558..46675577,-!p2@HOXB6!1.24!16.31!HOXB6;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.73!IRF6;;chr17:59477233..59477263,+!p1@TBX2!1.21!46.57!TBX2;;chr2:73144617..73144654,+!p1@EMX1!1.21!15.13!EMX1;;chr7:115608319..115608352,-!p4@TFEC!1.21!15.05!TFEC;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.82!IRX2;;chr20:43030002..43030028,+!p3@HNF4A!1.19!14.66!HNF4A;;chr10:8096631..8096660,+!p1@GATA3!1.18!17.02!GATA3;;chr7:115608357..115608372,-!p3@TFEC!1.18!14.26!TFEC;;chr9:1050331..1050363,+!p1@DMRT2!1.17!13.79!DMRT2;;chr3:69915369..69915381,+!p4@MITF!1.17!13.63!MITF;;chr10:119303078..119303169,+!p2@EMX2!1.15!13.24!EMX2;;chr16:85932760..85932775,+!p1@IRF8!1.15!13.16!IRF8;;chr19:46801639..46801699,+!p1@HIF3A!1.15!13.16!HIF3A;;chr6:50789717..50789729,+!p4@TFAP2B!1.15!13.00!TFAP2B;;chr17:53342311..53342400,+!p1@HLF!1.14!14.66!HLF;;chr3:128212033..128212051,-!p1@GATA2!1.13!12.61!GATA2;;chr10:119301928..119301955,+!p7@EMX2!1.13!12.53!EMX2;;chr7:27196217..27196246,-!p2@HOXA7!1.12!12.06!HOXA7;;chr11:113930291..113930339,+!p2@ZBTB16!1.11!19.54!ZBTB16;;chr6:100912752..100912778,-!p2@SIM1!1.09!11.43!SIM1;;chr17:46692624..46692659,-!p3@HOXB8!1.09!11.35!HOXB8;;chr18:42277095..42277130,+!p8@SETBP1!1.09!11.35!SETBP1;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.95!ZNF366;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.07!10.72!POU3F3;;chr1:217311025..217311049,-!p10@ESRRG!1.07!10.72!ESRRG;;chr17:35294075..35294102,+!p1@ENST00000559335!1.07!10.64!LHX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.26!FOXQ1;;chr8:76319876..76319926,+!p1@HNF4G!1.06!10.56!HNF4G;;chr16:51185172..51185197,-!p1@SALL1!1.06!10.56!SALL1;;chr4:149363494..149363543,-!p1@NR3C2!1.06!10.40!NR3C2;;chr3:25470156..25470227,+!p2@RARB!1.05!10.24!RARB;;chr12:121416340..121416360,+!p1@HNF1A!1.05!10.24!HNF1A;;chr6:126240442..126240459,+!p4@NCOA7!1.04!12.69!NCOA7;;chr7:27205106..27205134,-!p2@HOXA9!1.04!10.09!HOXA9;;chr16:51185573..51185593,-!p3@SALL1!1.04!10.09!SALL1;;chr17:46703212..46703238,-!p2@HOXB9!1.04!10.01!HOXB9;;chr16:51185318..51185348,-!p2@SALL1!1.04!9.85!SALL1;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.11!HOXB7;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.63!KLF15;;chr21:38071430..38071456,+!p1@SIM2!1.03!9.61!SIM2;;chr3:169381183..169381205,-!p4@MECOM!1.02!9.38!MECOM;;chr10:119302150..119302163,+!p8@EMX2!1.02!9.38!EMX2;;chr1:214161272..214161322,+!p1@PROX1!1.01!13.24!PROX1;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.14!HOXA3;;chr17:59477275..59477286,+!p3@TBX2!1.00!12.21!TBX2;;chr2:68592406..68592424,+!p1@PLEK!1.00!8.91!PLEK;;chr5:92918919..92918942,+!p1@NR2F1!0.97!38.06!NR2F1;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.27!HOXC10;;chr2:177001290..177001315,+!p1@HOXD3!0.96!8.20!HOXD3;;chr2:176981499..176981522,+!p2@HOXD10!0.96!8.04!HOXD10;;chr12:54380404..54380433,+!p3@HOXC10!0.96!8.04!HOXC10;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.96!IRX2;;chr11:34664014..34664045,+!p4@EHF!0.95!7.88!EHF;;chr3:114343039..11434308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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520adult%252c%2520pool1.CNhs10622.10017-101C8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10017-101C8
 |is_a=EFO:0002091;;FF:0010017
 |is_obsolete=
+|library_id=CNhs10622
+|library_id_phase_based=2:CNhs10622
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10017
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10017
 |name=kidney, adult, pool1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10622,LSID656,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:AM6000 Lot:0910061 -8
@@ Line 61: / Line 79: @@
 |rna_weight_ug=10
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+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 82: / Line 101: @@
 |top_motifs=HNF1A:6.28269066374;HNF4A_NR2F1,2:3.93395453235;ADNP_IRX_SIX_ZHX:3.71420882853;AR:2.12159427098;ALX1:2.01744992309;SP1:1.96932214447;SNAI1..3:1.96897769706;PAX6:1.9558552635;HOX{A6,A7,B6,B7}:1.92570453162;EP300:1.88088136302;TFCP2:1.79516727426;FOXQ1:1.69495475948;ZEB1:1.69015168453;NR5A1,2:1.60091655044;MYOD1:1.57691910214;NR6A1:1.56531029797;SREBF1,2:1.44657912533;NKX3-2:1.43768346638;PAX5:1.43588952136;ESRRA:1.43422817718;MAZ:1.34998001804;MTF1:1.33669614413;FOXD3:1.26368052589;NFATC1..3:1.20651487129;STAT1,3:1.18274548005;FOX{D1,D2}:1.17489073314;NR3C1:1.16611753264;T:1.11565192316;FOXO1,3,4:1.10057935671;NKX2-3_NKX2-5:1.06430660813;HIC1:1.05219945312;STAT2,4,6:1.03549308545;SOX5:0.963750428507;ESR1:0.931740189567;MYBL2:0.92479352486;HBP1_HMGB_SSRP1_UBTF:0.909453414527;FOXP3:0.904288412923;MED-1{core}:0.878163942138;VSX1,2:0.838304140317;TLX1..3_NFIC{dimer}:0.789520953312;XCPE1{core}:0.776722997301;RXRA_VDR{dimer}:0.776510097358;PATZ1:0.764289991405;LHX3,4:0.747193684154;GTF2I:0.723605411785;TEAD1:0.690567696326;SMAD1..7,9:0.674892101802;TBP:0.665725568473;NR1H4:0.654157537168;PAX1,9:0.636092053504;TFAP2{A,C}:0.627329874406;NANOG{mouse}:0.599637762872;IRF7:0.595395481897;TFAP2B:0.585380897313;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.580643178273;PRDM1:0.545957686706;HAND1,2:0.538890796831;MYFfamily:0.52075620476;RBPJ:0.499279368593;IKZF1:0.493385349098;GFI1B:0.492192519007;RXR{A,B,G}:0.477445334359;TGIF1:0.468266873359;ATF2:0.459813391237;DBP:0.44474322204;BPTF:0.436225692306;GFI1:0.431075391128;FOX{I1,J2}:0.414766169463;bHLH_family:0.403616548642;PDX1:0.393724996292;MZF1:0.386171758731;SRF:0.369230409405;MTE{core}:0.357301472721;SPZ1:0.338572965952;ZNF423:0.336996545169;FOXL1:0.331108308346;FOXN1:0.329465716137;PBX1:0.329442929308;IRF1,2:0.30187383008;POU2F1..3:0.273747466942;LMO2:0.260906524089;PPARG:0.228470239848;EBF1:0.227060870801;RFX1:0.218411832344;ZFP161:0.206496066359;GTF2A1,2:0.184624415984;GCM1,2:0.164658345974;ZNF143:0.164073045548;TFAP4:0.119086960078;NKX2-1,4:0.114374981228;ATF6:0.100910053724;ETS1,2:0.0929683516519;EGR1..3:0.0922303334102;RFX2..5_RFXANK_RFXAP:0.091992142222;TEF:0.0908908722867;MAFB:0.0748360875405;FOXA2:0.0611651710255;ELF1,2,4:0.0608658916745;MEF2{A,B,C,D}:0.0584685000818;PITX1..3:0.0405326403186;ATF4:0.0358587740412;ZNF148:0.0340751091252;ZBTB16:0.0279835825185;SPIB:0.0178423085485;PRRX1,2:0.0146159954016;FOXM1:-0.00990699440247;KLF4:-0.0100248547589;NHLH1,2:-0.0193682990498;NKX6-1,2:-0.0213346348612;POU6F1:-0.0224917410238;XBP1:-0.0602970125481;IKZF2:-0.0820306011456;SPI1:-0.0993341189417;NFE2:-0.122545130877;POU3F1..4:-0.122946491939;TLX2:-0.127764305335;ONECUT1,2:-0.130473841526;GATA6:-0.132920422256;NRF1:-0.137286711685;JUN:-0.139651919166;DMAP1_NCOR{1,2}_SMARC:-0.151664184619;NFY{A,B,C}:-0.177445295283;CUX2:-0.196723725009;NFIX:-0.199104613927;RORA:-0.206512250659;RREB1:-0.207794639217;GZF1:-0.229063520508;ZIC1..3:-0.276849511718;ELK1,4_GABP{A,B1}:-0.280042627738;POU5F1:-0.285347126088;EN1,2:-0.299604094626;TBX4,5:-0.303557347221;ARID5B:-0.314342336234;HIF1A:-0.320145837953;FOXP1:-0.335162377216;HMX1:-0.361004940951;NFE2L2:-0.369626425941;REST:-0.389106198762;GLI1..3:-0.397410749036;EVI1:-0.408343044689;TP53:-0.411669239118;NFIL3:-0.41497889036;NFKB1_REL_RELA:-0.415372023081;PAX2:-0.43637825051;HMGA1,2:-0.439605015536;BREu{core}:-0.452419065562;YY1:-0.466143683265;HLF:-0.478368816662;SOX{8,9,10}:-0.480738717044;STAT5{A,B}:-0.490392533077;CEBPA,B_DDIT3:-0.50156279225;HOX{A4,D4}:-0.574523065572;POU1F1:-0.582061032341;CDC5L:-0.614056218691;GATA4:-0.618438668001;ATF5_CREB3:-0.618914565342;PAX4:-0.62371982561;HOX{A5,B5}:-0.629187787978;UFEwm:-0.641028007223;FOSL2:-0.651691824822;OCT4_SOX2{dimer}:-0.655518166242;BACH2:-0.664880086724;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.67235660548;HSF1,2:-0.694425837544;SOX2:-0.69451476091;RUNX1..3:-0.725013116535;ZBTB6:-0.727784353655;FOS_FOS{B,L1}_JUN{B,D}:-0.740181330327;FOX{F1,F2,J1}:-0.741368838447;LEF1_TCF7_TCF7L1,2:-0.779079141811;ALX4:-0.834243869405;NFE2L1:-0.872589720101;CREB1:-0.909821728726;ZNF384:-0.924022512097;AIRE:-0.928475883746;ZNF238:-0.957671461535;NKX3-1:-0.95979381671;NANOG:-1.00130147767;PAX8:-1.0018201458;TAL1_TCF{3,4,12}:-1.08925493642;SOX17:-1.10053154908;E2F1..5:-1.10242941345;TFDP1:-1.1688393974;CDX1,2,4:-1.44235875664;HES1:-1.47188349267;CRX:-1.52068047059;MYB:-1.52933306172;AHR_ARNT_ARNT2:-1.55023677183;HOXA9_MEIS1:-1.61227484734;NKX2-2,8:-1.7551682066;TOPORS:-1.89330712307;PAX3,7:-1.96544129657
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10017-101C8;search_select_hide=table117:FF:10017-101C8
 }}

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FF:10017-101C8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:14, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0