FF:10448-106F7: Difference between revisions

Latest revision as of 14:02, 3 June 2020

Name:	endometrial stromal sarcoma cell line:OMC-9
Species:	Human (Homo sapiens)
Library ID:	CNhs11249
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	endometrium
dev stage	55 year old adult
sex	female
age	55
cell type	unclassifiable
cell line	OMC-9
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005316

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11249		CAGE		DRX007877		DRR008749

Accession ID Hg19

Library id		BAM		CTSS
CNhs11249		DRZ000174		DRZ001559

Accession ID Hg38

Library id		BAM		CTSS
CNhs11249		DRZ011524		DRZ012909

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0448
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0564
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	7.33146e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.219
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0768
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0548
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0551
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00655
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0197
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.201
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.104
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11249

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0936
MA0003.1	MA0003.1	0.163
MA0004.1	MA0004.1	0.358
MA0006.1	MA0006.1	0.346
MA0007.1	MA0007.1	0.96
MA0009.1	MA0009.1	0.434
MA0014.1	MA0014.1	0.0311
MA0017.1	MA0017.1	0.793
MA0018.2	MA0018.2	0.137
MA0019.1	MA0019.1	0.146
MA0024.1	MA0024.1	0.265
MA0025.1	MA0025.1	0.841
MA0027.1	MA0027.1	0.578
MA0028.1	MA0028.1	3.04713e-6
MA0029.1	MA0029.1	0.967
MA0030.1	MA0030.1	0.0145
MA0031.1	MA0031.1	0.372
MA0035.2	MA0035.2	0.0721
MA0038.1	MA0038.1	0.384
MA0039.2	MA0039.2	0.008
MA0040.1	MA0040.1	0.0543
MA0041.1	MA0041.1	0.786
MA0042.1	MA0042.1	0.14
MA0043.1	MA0043.1	0.00538
MA0046.1	MA0046.1	0.0472
MA0047.2	MA0047.2	0.362
MA0048.1	MA0048.1	0.00254
MA0050.1	MA0050.1	0.0223
MA0051.1	MA0051.1	0.199
MA0052.1	MA0052.1	6.67663e-5
MA0055.1	MA0055.1	0.00244
MA0057.1	MA0057.1	0.297
MA0058.1	MA0058.1	0.498
MA0059.1	MA0059.1	0.506
MA0060.1	MA0060.1	6.94267e-4
MA0061.1	MA0061.1	0.115
MA0062.2	MA0062.2	0.00108
MA0065.2	MA0065.2	0.544
MA0066.1	MA0066.1	0.377
MA0067.1	MA0067.1	0.181
MA0068.1	MA0068.1	0.0041
MA0069.1	MA0069.1	0.849
MA0070.1	MA0070.1	0.0575
MA0071.1	MA0071.1	0.787
MA0072.1	MA0072.1	0.926
MA0073.1	MA0073.1	0.844
MA0074.1	MA0074.1	0.968
MA0076.1	MA0076.1	1.39387e-5
MA0077.1	MA0077.1	0.521
MA0078.1	MA0078.1	0.218
MA0079.2	MA0079.2	0.628
MA0080.2	MA0080.2	4.64974e-7
MA0081.1	MA0081.1	0.0269
MA0083.1	MA0083.1	0.618
MA0084.1	MA0084.1	0.77
MA0087.1	MA0087.1	0.183
MA0088.1	MA0088.1	0.00833
MA0090.1	MA0090.1	0.368
MA0091.1	MA0091.1	0.0342
MA0092.1	MA0092.1	0.454
MA0093.1	MA0093.1	0.247
MA0099.2	MA0099.2	0.885
MA0100.1	MA0100.1	0.0974
MA0101.1	MA0101.1	0.0836
MA0102.2	MA0102.2	2.07564e-4
MA0103.1	MA0103.1	0.517
MA0104.2	MA0104.2	0.144
MA0105.1	MA0105.1	0.739
MA0106.1	MA0106.1	0.178
MA0107.1	MA0107.1	0.058
MA0108.2	MA0108.2	4.35043e-11
MA0111.1	MA0111.1	0.511
MA0112.2	MA0112.2	0.2
MA0113.1	MA0113.1	0.0557
MA0114.1	MA0114.1	0.319
MA0115.1	MA0115.1	0.45
MA0116.1	MA0116.1	0.787
MA0117.1	MA0117.1	0.467
MA0119.1	MA0119.1	0.168
MA0122.1	MA0122.1	0.593
MA0124.1	MA0124.1	0.579
MA0125.1	MA0125.1	0.791
MA0131.1	MA0131.1	0.543
MA0135.1	MA0135.1	0.118
MA0136.1	MA0136.1	3.79707e-5
MA0137.2	MA0137.2	0.0154
MA0138.2	MA0138.2	0.176
MA0139.1	MA0139.1	0.00518
MA0140.1	MA0140.1	0.197
MA0141.1	MA0141.1	0.544
MA0142.1	MA0142.1	0.237
MA0143.1	MA0143.1	0.754
MA0144.1	MA0144.1	0.0293
MA0145.1	MA0145.1	0.932
MA0146.1	MA0146.1	0.574
MA0147.1	MA0147.1	0.0797
MA0148.1	MA0148.1	0.8
MA0149.1	MA0149.1	0.179
MA0150.1	MA0150.1	0.251
MA0152.1	MA0152.1	0.198
MA0153.1	MA0153.1	0.473
MA0154.1	MA0154.1	0.201
MA0155.1	MA0155.1	0.189
MA0156.1	MA0156.1	0.397
MA0157.1	MA0157.1	0.196
MA0159.1	MA0159.1	0.449
MA0160.1	MA0160.1	0.573
MA0162.1	MA0162.1	0.29
MA0163.1	MA0163.1	0.906
MA0164.1	MA0164.1	0.303
MA0258.1	MA0258.1	0.484
MA0259.1	MA0259.1	0.368

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11249

Novel motif	Logo	P-value
1	1	0.121
10	10	0.426
100	100	0.583
101	101	0.552
102	102	0.911
103	103	0.636
104	104	0.67
105	105	0.534
106	106	0.0868
107	107	0.538
108	108	0.95
109	109	0.698
11	11	0.59
110	110	0.459
111	111	0.026
112	112	0.317
113	113	0.202
114	114	0.671
115	115	0.377
116	116	0.428
117	117	0.0713
118	118	0.835
119	119	0.113
12	12	0.406
120	120	0.12
121	121	0.306
122	122	0.225
123	123	0.955
124	124	0.317
125	125	0.926
126	126	0.0721
127	127	0.591
128	128	0.142
129	129	0.366
13	13	0.0395
130	130	0.921
131	131	0.96
132	132	0.621
133	133	0.587
134	134	0.103
135	135	0.265
136	136	0.778
137	137	0.312
138	138	0.502
139	139	0.0288
14	14	0.84
140	140	0.993
141	141	0.188
142	142	0.949
143	143	0.593
144	144	0.331
145	145	0.315
146	146	0.162
147	147	0.984
148	148	0.27
149	149	0.473
15	15	0.684
150	150	0.521
151	151	0.157
152	152	0.32
153	153	0.303
154	154	0.273
155	155	0.696
156	156	0.675
157	157	0.541
158	158	0.516
159	159	0.882
16	16	0.898
160	160	0.347
161	161	0.162
162	162	0.196
163	163	0.784
164	164	0.249
165	165	0.985
166	166	1
167	167	0.0857
168	168	0.244
169	169	0.695
17	17	0.762
18	18	0.0241
19	19	0.969
2	2	0.00313
20	20	0.0524
21	21	0.0506
22	22	0.852
23	23	0.368
24	24	0.2
25	25	0.24
26	26	0.363
27	27	0.302
28	28	0.374
29	29	0.234
3	3	0.116
30	30	0.392
31	31	0.83
32	32	0.0143
33	33	0.749
34	34	0.287
35	35	0.77
36	36	0.296
37	37	0.393
38	38	0.764
39	39	0.826
4	4	0.341
40	40	0.899
41	41	0.0814
42	42	0.0828
43	43	0.754
44	44	0.426
45	45	0.327
46	46	0.451
47	47	0.35
48	48	0.231
49	49	0.908
5	5	0.619
50	50	0.962
51	51	0.985
52	52	0.0281
53	53	0.231
54	54	0.338
55	55	0.984
56	56	0.574
57	57	0.438
58	58	0.342
59	59	0.175
6	6	0.751
60	60	0.287
61	61	0.441
62	62	0.928
63	63	0.634
64	64	0.979
65	65	0.53
66	66	0.00127
67	67	0.301
68	68	0.0351
69	69	0.568
7	7	0.583
70	70	0.775
71	71	0.403
72	72	0.996
73	73	0.966
74	74	0.385
75	75	0.069
76	76	0.499
77	77	0.91
78	78	0.439
79	79	0.749
8	8	0.264
80	80	0.0627
81	81	0.29
82	82	0.332
83	83	0.385
84	84	0.588
85	85	0.152
86	86	0.914
87	87	0.387
88	88	0.817
89	89	0.0125
9	9	0.104
90	90	0.0334
91	91	0.558
92	92	0.38
93	93	0.596
94	94	0.955
95	95	0.859
96	96	0.17
97	97	0.711
98	98	0.549
99	99	0.427

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11249

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100400 sarcoma cell line sample
FF:0101555 endometrial cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
1115 (sarcoma)
3001 (female reproductive endometrioid cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0101555 (endometrial cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007772
+|DRA_sample_Accession=CAGE@SAMD00005316
+|accession_numbers=CAGE;DRX007877;DRR008749;DRZ000174;DRZ001559;DRZ011524;DRZ012909
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.91!79.74!FOXS1;;chr1:170632285..170632309,+!p1@PRRX1!1.64!47.98!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.55!46.18!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.49!29.95!HOXC5;;chr5:92918919..92918942,+!p1@NR2F1!1.38!99.29!NR2F1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.66!ZBED1;;chr1:170632477..170632506,+!p6@PRRX1!1.30!19.00!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!1.29!19.97!NR2F1;;chr1:170632250..170632277,+!p7@PRRX1!1.27!17.75!PRRX1;;chr3:189349162..189349207,+!p2@TP63!1.27!17.47!TP63;;chr6:10412392..10412409,-!p4@TFAP2A!1.24!18.58!TFAP2A;;chr5:92919100..92919135,+!p3@NR2F1!1.23!19.28!NR2F1;;chr6:10412600..10412637,-!p1@TFAP2A!1.16!22.19!TFAP2A;;chr6:85473156..85473210,-!p2@TBX18!1.16!16.36!TBX18;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.15!13.17!HOXC5;;chr17:70117153..70117174,+!p1@SOX9!1.13!127.58!SOX9;;chr3:157823517..157823562,-!p1@SHOX2!1.12!13.04!SHOX2;;chr1:170633262..170633285,+!p3@PRRX1!1.10!13.45!PRRX1;;chr12:54380404..54380433,+!p3@HOXC10!1.10!11.65!HOXC10;;chr17:8027418..8027432,-!p1@HES7!1.09!11.23!HES7;;chr12:54378923..54378966,+!p1@HOXC10!1.08!11.09!HOXC10;;chr17:46682321..46682362,-!p1@HOXB6!1.08!10.96!HOXB6;;chr10:8096631..8096660,+!p1@GATA3!1.06!12.76!GATA3;;chr1:50889155..50889173,-!p2@DMRTA2!1.04!9.85!DMRTA2;;chr5:92919068..92919082,+!p5@NR2F1!1.00!10.82!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.00!9.98!NR2F1;;chr17:46622205..46622218,-!p3@HOXB2!0.98!9.98!HOXB2;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!9.98!TFAP2A;;chr8:116681409..116681431,-!p2@TRPS1!0.95!22.19!TRPS1;;chr17:46655704..46655718,-!p2@HOXB4!0.95!12.06!HOXB4;;chr17:46622440..46622477,-!p5@HOXB2!0.94!8.60!HOXB2;;chr5:92918894..92918912,+!p2@NR2F1!0.92!25.10!NR2F1;;chr10:8095593..8095625,+!p3@GATA3!0.92!8.74!GATA3;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.21!HOXD8;;chr9:126774018..126774055,+!p1@LHX2!0.91!7.07!LHX2;;chr17:46622229..46622257,-!p6@HOXB2!0.90!8.18!HOXB2;;chr17:46675558..46675577,-!p2@HOXB6!0.89!6.80!HOXB6;;chr1:170632683..170632696,+!p12@PRRX1!0.88!6.66!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.87!9.98!PITX1;;chr17:46675420..46675465,-!p3@HOXB6!0.87!7.49!HOXB6;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.33!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.33!OSR1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.57!HOXB2;;chr2:237077022..237077038,-!p1@GBX2!0.85!6.10!GBX2;;chr5:72744445..72744466,-!p2@FOXD1!0.84!10.26!FOXD1;;chr5:72744594..72744609,-!p1@FOXD1!0.83!28.15!FOXD1;;chr1:50889103..50889145,-!p1@DMRTA2!0.83!5.82!DMRTA2;;chr5:92919452..92919496,+!p11@NR2F1!0.83!5.69!NR2F1;;chr22:19748231..19748317,+!p1@TBX1!0.83!5.69!TBX1;;chr2:200323414..200323455,-!p1@SATB2!0.82!12.48!SATB2;;chr6:10415484..10415508,-!p3@TFAP2A!0.82!5.55!TFAP2A;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.55!HOXC9;;chr19:33864571..33864596,+!p2@CEBPG!0.81!14.01!CEBPG;;chr17:46703942..46703964,-!p4@HOXB9!0.80!5.27!HOXB9;;chr6:126102254..126102289,+!p5@NCOA7!0.79!15.39!NCOA7;;chr17:46655730..46655791,-!p1@HOXB4!0.79!13.73!HOXB4;;chr17:46622070..46622109,-!p1@HOXB2!0.79!12.34!HOXB2;;chr1:935398..935465,-!p2@HES4!0.79!11.37!HES4;;chr1:170632723..170632739,+!p8@PRRX1!0.78!4.99!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.78!4.99!ZNF668;;chr22:19746969..19746987,+!p2@TBX1!0.76!4.71!TBX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.76!4.71!ZNF385D;;chr5:92918768..92918783,+!p8@NR2F1!0.76!4.71!NR2F1;;chr6:21593973..21593988,+!p1@SOX4!0.74!178.89!SOX4;;chr13:73633131..73633149,+!p1@KLF5!0.74!53.11!KLF5;;chr6:126102292..126102329,+!p3@NCOA7!0.74!16.22!NCOA7;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.44!FOXG1;;chr5:92920456..92920488,+!p9@NR2F1!0.73!5.27!NR2F1;;chr1:170632959..170632987,+!p4@PRRX1!0.73!4.85!PRRX1;;chr11:129245526..129245553,+!p1@BARX2!0.72!4.30!BARX2;;chr1:170633058..170633084,+!p5@PRRX1!0.71!4.16!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.71!4.16!KLF17;;chr17:46667628..46667642,-!p2@HOXB3!0.71!4.16!HOXB3;;chr8:67525443..67525459,-!p2@MYBL1!0.70!6.38!MYBL1;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.69!HOXB2;;chr3:21792585..21792625,-!p2@ZNF385D!0.70!4.58!ZNF385D;;chr20:30433431..30433442,-!p2@FOXS1!0.70!4.02!FOXS1;;chr1:40367530..40367597,-!p1@MYCL1!0.69!7.63!MYCL1;;chr17:46688334..46688385,-!p1@HOXB7!0.69!5.96!HOXB7;;chr8:116673894..116673913,-!p12@TRPS1!0.69!3.88!TRPS1;;chr2:71127699..71127744,+!p1@VAX2!0.68!8.46!VAX2;;chr17:46687959..46688007,-!p2@HOXB7!0.68!5.55!HOXB7;;chr15:76629123..76629151,+!p1@ISL2!0.68!4.30!ISL2;;chr10:64018918..64018936,+!p2@ZNF365!0.68!3.74!ZNF365;;chr10:64134120..64134183,+!p1@ZNF365!0.67!4.58!ZNF365;;chr5:92918860..92918871,+!p10@NR2F1!0.67!4.16!NR2F1;;chr12:96588143..96588185,+!p1@ELK3!0.66!50.48!ELK3;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.55!SATB2;;chr3:21792790..21792824,-!p4@ZNF385D!0.66!3.61!ZNF385D;;chr17:46667594..46667619,-!p1@HOXB3!0.66!3.61!HOXB3;;chr1:170632439..170632465,+!p11@PRRX1!0.66!3.61!PRRX1;;chr17:46621937..46621966,-!p2@HOXB2!0.65!10.68!HOXB2;;chr12:57853634..57853662,+!p2@GLI1!0.65!3.47!GLI1;;chr6:28321971..28321995,-!p1@ZNF323!0.65!3.47!ZNF323;;chr9:129376201..129376225,+!p1@LMX1B!0.65!3.47!LMX1B;;chr8:116681221..116681236,-!p3@TRPS1!0.64!11.23!TRPS1;;chr13:72441315..72441454,-!p1@DACH1!0.64!7.49!DACH1;;chr9:132427972..132428056,+!p1@PRRX2!0.64!4.58!PRRX2;;chr5:92919194..92919204,+!p16@NR2F1!0.64!3.33!NR2F1;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.33!TFAP2A;;chr22:22874610..22874616,-!p1@ZNF280A!0.64!3.33!ZNF280A;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!0.64!3.33!SOHLH2;;chr16:67063211..67063240,+!p2@CBFB!0.63!18.03!CBFB;;chr7:149470641..149470694,-!p1@ZNF467!0.63!17.06!ZNF467;;chr7:150945754..150945789,-!p2@SMARCD3!0.63!11.51!SMARCD3;;chr6:21597514..21597578,+!p4@SOX4!0.63!5.96!SOX4;;chr3:185826855..185826911,-!p1@ETV5!0.62!105.12!ETV5;;chr12:66218598..66218645,+!p2@HMGA2!0.62!16.92!HMGA2;;chr2:239148671..239148686,-!p1@HES6!0.62!13.45!HES6;;chr10:35484053..35484076,+!p1@CREM!0.62!8.88!CREM;;chr19:33865009..33865090,+!p3@CEBPG!0.62!4.44!CEBPG;;chr12:54378864..54378884,+!p6@HOXC10!0.62!3.19!HOXC10;;chr3:189348969..189349018,+!p4@TP63!0.62!3.19!TP63;;chr5:134369879..134369898,-!p2@PITX1!0.62!3.19!PITX1;;chr1:170632115..170632136,+!p9@PRRX1!0.62!3.19!PRRX1;;chr7:28725740..28725778,+!p1@CREB5!0.61!32.87!CREB5;;chr19:53193790..53193821,-!p3@ZNF83!0.61!10.82!ZNF83;;chr8:116681247..116681261,-!p8@TRPS1!0.61!4.16!TRPS1;;chr8:80680078..80680101,-!p3@HEY1!0.61!3.47!HEY1;;chr1:2985726..2985752,+!p2@PRDM16!0.61!3.05!PRDM16;;chr8:116681194..116681214,-!p1@TRPS1!0.60!33.28!TRPS1;;chr6:1312325..1312340,+!p1@FOXQ1!0.60!5.27!FOXQ1;;chr8:116681275..116681290,-!p11@TRPS1!0.60!3.88!TRPS1;;chr14:74226961..74227020,-!p1@C14orf43!0.59!22.74!C14orf43;;chr9:14314131..14314147,-!p2@NFIB!0.59!19.28!NFIB;;chr6:21597600..21597664,+!p3@SOX4!0.59!5.27!SOX4;;chr20:52185447..52185462,-!p2@ZNF217!0.59!4.99!ZNF217;;chr12:54410948..54410992,+!p3@HOXC5!0.59!2.91!HOXC5;;chr17:46621146..46621180,-!p10@HOXB2!0.59!2.91!HOXB2;;chr2:237076992..237077008,-!p2@GBX2!0.59!2.91!GBX2;;chr3:21792631..21792665,-!p3@ZNF385D!0.59!2.91!ZNF385D;;chr6:21597765..21597779,+!p2@SOX4!0.58!27.73!SOX4;;chr2:10183651..10183713,+!p1@KLF11!0.58!24.82!KLF11;;chr17:46703212..46703238,-!p2@HOXB9!0.58!2.77!HOXB9;;chr7:26191809..26191890,+!p1@NFE2L3!0.57!16.22!NFE2L3;;chr11:65667884..65667895,-!p2@FOSL1!0.57!12.48!FOSL1;;chr12:3068466..3068495,+!p3@TEAD4!0.57!6.80!TEAD4;;chr14:73360799..73360817,-!p1@DPF3!0.56!10.82!DPF3;;chr16:68564003..68564050,+!p2@ZFP90!0.56!8.32!ZFP90;;chr1:33004734..33004807,+!p2@ZBTB8A!0.56!5.55!ZBTB8A;;chr6:21597370..21597408,+!p5@SOX4!0.56!4.71!SOX4;;chr17:46655672..46655697,-!p3@HOXB4!0.56!2.63!HOXB4;;chr17:46671108..46671147,-!p1@HOXB5!0.56!2.63!HOXB5;;chr17:46690839..46690884,-!p1@HOXB8!0.56!2.63!HOXB8;;chr17:46703687..46703740,-!p1@HOXB9!0.56!2.63!HOXB9;;chr12:54332608..54332636,+!p1@HOXC13!0.56!2.63!HOXC13;;chr7:14029283..14029311,-!p1@ETV1!0.55!16.92!ETV1;;chr10:44070016..44070069,-!p1@ZNF239!0.55!9.01!ZNF239;;chr20:2673383..2673441,+!p1@EBF4!0.55!4.44!EBF4;;chrX:66763815..66763854,+!p2@AR!0.55!3.61!AR;;chr7:14029312..14029325,-!p4@ETV1!0.55!3.33!ETV1;;chr15:76629097..76629120,+!p2@ISL2!0.55!2.91!ISL2;;chr16:69599899..69599919,+!p2@NFAT5!0.54!35.92!NFAT5;;chr11:65687158..65687216,+!p4@DRAP1!0.54!17.75!DRAP1;;chr1:935467..935484,-!p1@HES4!0.54!13.31!HES4;;chr19:53289995..53290050,-!p1@ZNF600!0.54!12.34!ZNF600;;chr4:146402966..146402985,+!p2@SMAD1!0.54!11.37!SMAD1;;chr9:115818951..115819011,-!p1@ZFP37!0.54!9.15!ZFP37;;chr16:69726820..69726843,+!p3@NFAT5!0.54!3.88!NFAT5;;chr1:935519..935532,-!p4@HES4!0.54!3.05!HES4;;chr1:170632137..170632172,+!p10@PRRX1!0.54!2.50!PRRX1;;chr9:126773880..126773895,+!p2@LHX2!0.54!2.50!LHX2;;chr9:16705069..16705086,-!p3@BNC2!0.54!2.50!BNC2;;chr11:128331703..128331717,-!p8@ETS1!0.54!2.50!ETS1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.54!2.50!TFCP2L1;;chr10:31608127..31608156,+!p1@ZEB1!0.53!56.30!ZEB1;;chr16:68573182..68573228,+!p1@ZFP90!0.53!29.82!ZFP90;;chr2:42795651..42795676,+!p3@MTA3!0.53!7.49!MTA3;;chr11:63684602..63684664,-!p1@RCOR2!0.53!5.41!RCOR2;;chr12:66218003..66218018,+!p9@HMGA2!0.53!3.05!HMGA2;;chr10:31607702..31607755,+!p3@ZEB1!0.53!2.91!ZEB1;;chr6:10412477..10412490,-!p10@TFAP2A!0.53!2.36!TFAP2A;;chr1:170632762..170632786,+!p13@PRRX1!0.53!2.36!PRRX1;;chr17:17740330..17740349,-!p3@SREBF1!0.52!19.55!SREBF1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.52!13.87!GLIS2;;chr9:14314106..14314119,-!p5@NFIB!0.52!4.71!NFIB;;chr16:68573640..68573660,+!p3@ZFP90!0.52!3.33!ZFP90;;chr17:17740287..17740307,-!p1@SREBF1!0.51!77.80!SREBF1;;chr12:66218836..66218888,+!p1@HMGA2!0.51!27.04!HMGA2;;chr2:174830084..174830108,-!p4@SP3!0.51!10.82!SP3;;chr5:124082322..124082364,-!p1@ZNF608!0.51!6.93!ZNF608;;chr5:124082470..124082483,-!p8@ZNF608!0.51!2.22!ZNF608;;chr17:46675469..46675481,-!p4@HOXB6!0.51!2.22!HOXB6;;chr11:129245736..129245758,+!p2@BARX2!0.51!2.22!BARX2;;chr14:29234581..29234601,+!p2@FOXG1!0.51!2.22!FOXG1;;chr7:150974206..150974255,-!p1@SMA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@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrial%2520stromal%2520sarcoma%2520cell%2520line%253aOMC-9.CNhs11249.10448-106F7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10448-106F7
 |is_a=EFO:0002091;;FF:0000210;;FF:0100400;;FF:0101555
 |is_obsolete=
-|library_ids=CNhs11249
+|library_id=CNhs11249
+|library_id_phase_based=2:CNhs11249
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10448
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10448
 |name=endometrial stromal sarcoma cell line:OMC-9
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11249,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 87: / Line 100: @@
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007772
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 }}

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FF:10448-106F7: Difference between revisions

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Latest revision as of 14:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0