FF:11524-119I3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004821 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004821 | ||
|accession_numbers=CAGE;DRX008304;DRR009176;DRZ000601;DRZ001986;DRZ011951;DRZ013336 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037250;DRR041616;DRZ007258 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000077 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Stellate%2520Cells%2520%2528lipocyte%2529%252c%2520donor1.CNhs11335.11524-119I3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11524-119I3 | |id=FF:11524-119I3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000077;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs11335 | |||
|library_id_phase_based=2:CNhs11335 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11524 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.ACAGTG.11524 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11524 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.ACAGTG.11524 | |||
|name=Hepatic Stellate Cells (lipocyte), donor1 | |name=Hepatic Stellate Cells (lipocyte), donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11335,LSID768,release014,COMPLETED | |profile_hcage=CNhs11335,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0748518269553055,0,0,0,0,0.100503900672754,0,0.311583533666969,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00361935643781619,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0710478900107072,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0776361058904229,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0373032013685102,0.105109365192378,0,0,0,0.0366730656720932,0.14325683410692,0,0,0,0.149703653910611,0.162786579521434,-0.0636253738455895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.107111993871888,0.212370959049348,0,0,-0.0364132912814638,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC5305 | |rna_catalog_number=SC5305 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119I3 | |rna_tube_id=119I3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.ACAGTG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.85123645352439e-211!GO:0005737;cytoplasm;9.11927117182825e-192!GO:0043226;organelle;1.25099924988017e-154!GO:0043229;intracellular organelle;1.43563817282142e-154!GO:0043231;intracellular membrane-bound organelle;1.54207390439883e-153!GO:0043227;membrane-bound organelle;3.32930912524595e-153!GO:0044444;cytoplasmic part;4.41432199072374e-140!GO:0044422;organelle part;4.99003991656544e-118!GO:0044446;intracellular organelle part;8.41841536108642e-117!GO:0005515;protein binding;1.55902354301528e-73!GO:0032991;macromolecular complex;3.53623377831149e-73!GO:0044237;cellular metabolic process;8.37562016060251e-73!GO:0044238;primary metabolic process;2.16042103896929e-72!GO:0030529;ribonucleoprotein complex;1.24298936237415e-71!GO:0005739;mitochondrion;2.08808703756897e-66!GO:0043170;macromolecule metabolic process;5.83014451802478e-62!GO:0043233;organelle lumen;8.92050098891215e-58!GO:0031974;membrane-enclosed lumen;8.92050098891215e-58!GO:0003723;RNA binding;1.50168313503434e-50!GO:0031090;organelle membrane;1.50168313503434e-50!GO:0005840;ribosome;1.74766311553352e-49!GO:0019538;protein metabolic process;5.219407793021e-49!GO:0044428;nuclear part;9.68313051110514e-49!GO:0009058;biosynthetic process;1.21401232020318e-45!GO:0003735;structural constituent of ribosome;1.51484863913531e-44!GO:0016043;cellular component organization and biogenesis;1.83994079374861e-44!GO:0044429;mitochondrial part;2.5901822684801e-44!GO:0006412;translation;4.89645862299383e-44!GO:0044260;cellular macromolecule metabolic process;1.41337583185651e-43!GO:0005634;nucleus;4.29660750040047e-43!GO:0044267;cellular protein metabolic process;1.29758814142036e-42!GO:0044249;cellular biosynthetic process;1.27166141090815e-39!GO:0009059;macromolecule biosynthetic process;1.4619701201831e-38!GO:0033279;ribosomal subunit;1.60685451373204e-38!GO:0031967;organelle envelope;1.26555150259955e-36!GO:0031975;envelope;3.07032067424882e-36!GO:0015031;protein transport;1.21615396955045e-35!GO:0033036;macromolecule localization;2.80689521722949e-35!GO:0043234;protein complex;3.61081388170226e-35!GO:0005829;cytosol;9.1281518922309e-35!GO:0008104;protein localization;4.66510878412958e-33!GO:0045184;establishment of protein localization;5.71548474014045e-33!GO:0006396;RNA processing;3.44980194425207e-32!GO:0005740;mitochondrial envelope;1.67737306376695e-30!GO:0031981;nuclear lumen;1.83758264012964e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.90433571774737e-29!GO:0031966;mitochondrial membrane;1.19255426511129e-28!GO:0046907;intracellular transport;4.82750826081213e-28!GO:0006996;organelle organization and biogenesis;2.0169813604674e-27!GO:0043283;biopolymer metabolic process;7.85303533910168e-27!GO:0019866;organelle inner membrane;1.4695075030286e-26!GO:0016071;mRNA metabolic process;6.77142154255395e-26!GO:0005743;mitochondrial inner membrane;1.55604754051723e-25!GO:0065003;macromolecular complex assembly;3.55703855828104e-25!GO:0010467;gene expression;2.55838996554879e-24!GO:0005783;endoplasmic reticulum;5.35982677274856e-24!GO:0006886;intracellular protein transport;9.87813016778119e-24!GO:0022607;cellular component assembly;1.16583098347602e-23!GO:0043228;non-membrane-bound organelle;1.47514678775307e-23!GO:0043232;intracellular non-membrane-bound organelle;1.47514678775307e-23!GO:0008380;RNA splicing;1.12037858331187e-22!GO:0044445;cytosolic part;2.4137817115574e-22!GO:0006397;mRNA processing;1.42231174490715e-21!GO:0012505;endomembrane system;6.11192510586543e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.49135162634748e-20!GO:0015934;large ribosomal subunit;7.97107705067377e-20!GO:0006119;oxidative phosphorylation;9.36984462797621e-20!GO:0015935;small ribosomal subunit;1.10480270403914e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.96117372413404e-19!GO:0044455;mitochondrial membrane part;1.64731560620886e-18!GO:0005654;nucleoplasm;2.22367942629123e-18!GO:0044432;endoplasmic reticulum part;2.77770570196127e-18!GO:0048770;pigment granule;1.65664786014852e-17!GO:0042470;melanosome;1.65664786014852e-17!GO:0005794;Golgi apparatus;2.53520664800413e-17!GO:0031980;mitochondrial lumen;2.94065262074911e-17!GO:0005759;mitochondrial matrix;2.94065262074911e-17!GO:0051641;cellular localization;3.02117457342428e-17!GO:0005681;spliceosome;3.79306949029786e-17!GO:0051649;establishment of cellular localization;4.06315034506057e-17!GO:0006457;protein folding;4.29221902488821e-17!GO:0044451;nucleoplasm part;1.43540108440709e-16!GO:0006259;DNA metabolic process;2.09989717890887e-16!GO:0005746;mitochondrial respiratory chain;3.79915930062923e-16!GO:0051186;cofactor metabolic process;8.06461145654817e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.36845763503866e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.36559717461265e-15!GO:0008134;transcription factor binding;1.29624320909217e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.29624320909217e-14!GO:0003954;NADH dehydrogenase activity;1.29624320909217e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.29624320909217e-14!GO:0007049;cell cycle;2.55338298536123e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.31648582959411e-14!GO:0016874;ligase activity;5.15864286160396e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.45454281102552e-13!GO:0016462;pyrophosphatase activity;2.68547284225961e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;2.98772971350135e-13!GO:0005761;mitochondrial ribosome;4.37396020637735e-13!GO:0000313;organellar ribosome;4.37396020637735e-13!GO:0000166;nucleotide binding;5.69280804037154e-13!GO:0005730;nucleolus;6.19732836340829e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.41400328457103e-13!GO:0042773;ATP synthesis coupled electron transport;6.41400328457103e-13!GO:0017111;nucleoside-triphosphatase activity;1.14857859994021e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.18032825356053e-12!GO:0045271;respiratory chain complex I;1.18032825356053e-12!GO:0005747;mitochondrial respiratory chain complex I;1.18032825356053e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.44916821709357e-12!GO:0006605;protein targeting;2.04542619713406e-12!GO:0016192;vesicle-mediated transport;2.48497316501052e-12!GO:0006732;coenzyme metabolic process;2.57292419749799e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.70724509438111e-12!GO:0043412;biopolymer modification;2.95115825985075e-12!GO:0044265;cellular macromolecule catabolic process;3.29212680472012e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.30543361767172e-12!GO:0005789;endoplasmic reticulum membrane;3.57823392266917e-12!GO:0006512;ubiquitin cycle;3.73069843248883e-12!GO:0051082;unfolded protein binding;5.21643120182706e-12!GO:0000502;proteasome complex (sensu Eukaryota);5.92042923367812e-12!GO:0044248;cellular catabolic process;1.37303203330515e-11!GO:0022618;protein-RNA complex assembly;1.94508187977728e-11!GO:0048193;Golgi vesicle transport;2.32873298642336e-11!GO:0022402;cell cycle process;3.20212283213448e-11!GO:0009055;electron carrier activity;3.32473143875911e-11!GO:0006464;protein modification process;4.05218422803698e-11!GO:0043285;biopolymer catabolic process;5.27805954173533e-11!GO:0009057;macromolecule catabolic process;6.54802333217192e-11!GO:0048523;negative regulation of cellular process;7.56537651238617e-11!GO:0005793;ER-Golgi intermediate compartment;1.1095246403122e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.35855651627179e-10!GO:0008135;translation factor activity, nucleic acid binding;1.93246767712211e-10!GO:0012501;programmed cell death;1.99329243772338e-10!GO:0019941;modification-dependent protein catabolic process;2.25584809248111e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.25584809248111e-10!GO:0044257;cellular protein catabolic process;2.69717680338054e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.43276581338181e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.82866243478808e-10!GO:0000375;RNA splicing, via transesterification reactions;3.82866243478808e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.82866243478808e-10!GO:0006915;apoptosis;4.72660145798645e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.13034268547153e-09!GO:0030163;protein catabolic process;2.23663664726984e-09!GO:0008219;cell death;2.33240643692431e-09!GO:0016265;death;2.33240643692431e-09!GO:0003712;transcription cofactor activity;2.39490792263256e-09!GO:0032553;ribonucleotide binding;2.39490792263256e-09!GO:0032555;purine ribonucleotide binding;2.39490792263256e-09!GO:0048519;negative regulation of biological process;3.51731696484718e-09!GO:0005788;endoplasmic reticulum lumen;4.53534406519449e-09!GO:0016491;oxidoreductase activity;5.59666099664023e-09!GO:0017076;purine nucleotide binding;6.3460488237269e-09!GO:0006323;DNA packaging;1.0883075025533e-08!GO:0006461;protein complex assembly;1.34434285379623e-08!GO:0000278;mitotic cell cycle;1.47174844107362e-08!GO:0043687;post-translational protein modification;1.48190513762913e-08!GO:0000074;regulation of progression through cell cycle;2.36625972965478e-08!GO:0051726;regulation of cell cycle;2.42219770380477e-08!GO:0042254;ribosome biogenesis and assembly;3.96102797956072e-08!GO:0006913;nucleocytoplasmic transport;4.52072816480593e-08!GO:0009259;ribonucleotide metabolic process;4.83998277742634e-08!GO:0051276;chromosome organization and biogenesis;5.50825315684296e-08!GO:0008565;protein transporter activity;5.71098074519143e-08!GO:0003676;nucleic acid binding;6.21265240383106e-08!GO:0051188;cofactor biosynthetic process;7.06636673739698e-08!GO:0006163;purine nucleotide metabolic process;8.51753690894207e-08!GO:0051169;nuclear transport;9.00032042937144e-08!GO:0006366;transcription from RNA polymerase II promoter;9.33131317487823e-08!GO:0016023;cytoplasmic membrane-bound vesicle;9.94544050509139e-08!GO:0009150;purine ribonucleotide metabolic process;1.00846729357589e-07!GO:0003743;translation initiation factor activity;1.16228615214263e-07!GO:0005635;nuclear envelope;1.20306867173438e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.46704844075888e-07!GO:0044431;Golgi apparatus part;1.54229933498671e-07!GO:0031988;membrane-bound vesicle;1.54240120451844e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.57914967930803e-07!GO:0016070;RNA metabolic process;1.70800863921917e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.72033219946355e-07!GO:0009060;aerobic respiration;1.83201374220617e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.88323243037789e-07!GO:0030120;vesicle coat;1.97504078516978e-07!GO:0030662;coated vesicle membrane;1.97504078516978e-07!GO:0006399;tRNA metabolic process;2.09752866062436e-07!GO:0016740;transferase activity;2.24663102096906e-07!GO:0008639;small protein conjugating enzyme activity;2.27513268923068e-07!GO:0005768;endosome;2.36010762464988e-07!GO:0048475;coated membrane;2.76952471666657e-07!GO:0030117;membrane coat;2.76952471666657e-07!GO:0003924;GTPase activity;3.22971274643034e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.30522652383138e-07!GO:0016604;nuclear body;3.38198969727875e-07!GO:0017038;protein import;3.46481980594564e-07!GO:0006164;purine nucleotide biosynthetic process;3.78303339601229e-07!GO:0004842;ubiquitin-protein ligase activity;4.16283869561182e-07!GO:0009056;catabolic process;4.38607705855382e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.38607705855382e-07!GO:0043067;regulation of programmed cell death;5.00741159245103e-07!GO:0009260;ribonucleotide biosynthetic process;5.06025923305304e-07!GO:0009141;nucleoside triphosphate metabolic process;5.56135030405297e-07!GO:0042981;regulation of apoptosis;5.59425279172795e-07!GO:0006413;translational initiation;5.61684175346019e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.77023010673454e-07!GO:0032559;adenyl ribonucleotide binding;5.9873318564081e-07!GO:0006333;chromatin assembly or disassembly;6.03282692842443e-07!GO:0019787;small conjugating protein ligase activity;6.26145303468986e-07!GO:0005524;ATP binding;6.46469369884053e-07!GO:0051246;regulation of protein metabolic process;7.14351214989941e-07!GO:0031965;nuclear membrane;7.64696390398163e-07!GO:0006888;ER to Golgi vesicle-mediated transport;7.9924573413088e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.78685051145007e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.78685051145007e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.27598281513903e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.27598281513903e-06!GO:0015986;ATP synthesis coupled proton transport;1.36065872805481e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.36065872805481e-06!GO:0031252;leading edge;1.40624442537866e-06!GO:0016853;isomerase activity;1.71909324461209e-06!GO:0065004;protein-DNA complex assembly;1.73438239179715e-06!GO:0030554;adenyl nucleotide binding;1.75897752400683e-06!GO:0045333;cellular respiration;1.76898709073405e-06!GO:0045786;negative regulation of progression through cell cycle;1.90709116591269e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.9424432234227e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.9424432234227e-06!GO:0009117;nucleotide metabolic process;2.51709792890722e-06!GO:0016881;acid-amino acid ligase activity;2.63577096072755e-06!GO:0008361;regulation of cell size;2.65984973900612e-06!GO:0006446;regulation of translational initiation;2.85421537607365e-06!GO:0016049;cell growth;3.05023815614802e-06!GO:0007005;mitochondrion organization and biogenesis;3.2489342594318e-06!GO:0045259;proton-transporting ATP synthase complex;3.28326504037537e-06!GO:0031410;cytoplasmic vesicle;3.5172629831079e-06!GO:0050794;regulation of cellular process;3.53943124449178e-06!GO:0043069;negative regulation of programmed cell death;3.55036188909716e-06!GO:0031982;vesicle;3.69175613144444e-06!GO:0030036;actin cytoskeleton organization and biogenesis;4.22632170671858e-06!GO:0008654;phospholipid biosynthetic process;4.22632170671858e-06!GO:0006974;response to DNA damage stimulus;4.72710951230987e-06!GO:0006099;tricarboxylic acid cycle;4.81167727383864e-06!GO:0046356;acetyl-CoA catabolic process;4.81167727383864e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.18139888260565e-06!GO:0004812;aminoacyl-tRNA ligase activity;5.18139888260565e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.18139888260565e-06!GO:0003714;transcription corepressor activity;5.67984943397617e-06!GO:0051187;cofactor catabolic process;6.0320110187557e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.23253468369625e-06!GO:0065002;intracellular protein transport across a membrane;6.33479966130762e-06!GO:0044453;nuclear membrane part;6.41827447057645e-06!GO:0009108;coenzyme biosynthetic process;6.79684211820325e-06!GO:0006334;nucleosome assembly;6.83316339785682e-06!GO:0043066;negative regulation of apoptosis;6.9380889813569e-06!GO:0045454;cell redox homeostasis;7.25999182105931e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.55937294254319e-06!GO:0008610;lipid biosynthetic process;7.67268148890102e-06!GO:0016564;transcription repressor activity;7.67268148890102e-06!GO:0046034;ATP metabolic process;7.67268148890102e-06!GO:0031497;chromatin assembly;7.80697835371843e-06!GO:0000139;Golgi membrane;7.92532935289952e-06!GO:0005773;vacuole;7.94961504955664e-06!GO:0005667;transcription factor complex;1.04548128590331e-05!GO:0005770;late endosome;1.06430539240613e-05!GO:0022403;cell cycle phase;1.07241212404337e-05!GO:0016568;chromatin modification;1.07327036237413e-05!GO:0043038;amino acid activation;1.10715926673028e-05!GO:0006418;tRNA aminoacylation for protein translation;1.10715926673028e-05!GO:0043039;tRNA aminoacylation;1.10715926673028e-05!GO:0031324;negative regulation of cellular metabolic process;1.10715926673028e-05!GO:0006084;acetyl-CoA metabolic process;1.11969666173651e-05!GO:0000785;chromatin;1.40076423920814e-05!GO:0044440;endosomal part;1.40076423920814e-05!GO:0010008;endosome membrane;1.40076423920814e-05!GO:0016126;sterol biosynthetic process;1.42844485379512e-05!GO:0005694;chromosome;1.43685315588378e-05!GO:0006754;ATP biosynthetic process;1.51902588679381e-05!GO:0006753;nucleoside phosphate metabolic process;1.51902588679381e-05!GO:0009109;coenzyme catabolic process;1.57012856272142e-05!GO:0019829;cation-transporting ATPase activity;1.58607253660565e-05!GO:0044427;chromosomal part;1.62113315420389e-05!GO:0006364;rRNA processing;1.73198742548063e-05!GO:0005905;coated pit;1.75442321851051e-05!GO:0042623;ATPase activity, coupled;1.79181704715618e-05!GO:0005762;mitochondrial large ribosomal subunit;1.79653689898825e-05!GO:0000315;organellar large ribosomal subunit;1.79653689898825e-05!GO:0030029;actin filament-based process;1.83632070575107e-05!GO:0006793;phosphorus metabolic process;1.83632070575107e-05!GO:0006796;phosphate metabolic process;1.83632070575107e-05!GO:0006091;generation of precursor metabolites and energy;1.8438645475266e-05!GO:0001558;regulation of cell growth;2.17330482471035e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.27890458854307e-05!GO:0016607;nuclear speck;2.35167666263321e-05!GO:0050789;regulation of biological process;2.44493526931922e-05!GO:0006916;anti-apoptosis;2.61184919203751e-05!GO:0009719;response to endogenous stimulus;2.90345260306055e-05!GO:0019843;rRNA binding;3.55035098197377e-05!GO:0048522;positive regulation of cellular process;3.70991258378012e-05!GO:0016563;transcription activator activity;3.9764141400277e-05!GO:0051789;response to protein stimulus;4.07322489715136e-05!GO:0006986;response to unfolded protein;4.07322489715136e-05!GO:0016072;rRNA metabolic process;4.22582405572989e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.62094175157456e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.62094175157456e-05!GO:0016887;ATPase activity;4.88956096018008e-05!GO:0004298;threonine endopeptidase activity;5.01744081641685e-05!GO:0006260;DNA replication;5.03815940572741e-05!GO:0009892;negative regulation of metabolic process;5.17319448959647e-05!GO:0000323;lytic vacuole;5.26873475138485e-05!GO:0005764;lysosome;5.26873475138485e-05!GO:0016310;phosphorylation;5.52369610991311e-05!GO:0005791;rough endoplasmic reticulum;5.86206884138677e-05!GO:0005525;GTP binding;5.8852029422199e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.15534715301281e-05!GO:0016859;cis-trans isomerase activity;7.20271364286341e-05!GO:0003697;single-stranded DNA binding;7.48739645265893e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.581481538209e-05!GO:0007010;cytoskeleton organization and biogenesis;7.581481538209e-05!GO:0007067;mitosis;8.04834006591042e-05!GO:0000087;M phase of mitotic cell cycle;8.59903408003739e-05!GO:0044262;cellular carbohydrate metabolic process;8.87007884620581e-05!GO:0006281;DNA repair;8.98207641716785e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.25741648981534e-05!GO:0051170;nuclear import;9.6160455685817e-05!GO:0046474;glycerophospholipid biosynthetic process;9.75953226148462e-05!GO:0006752;group transfer coenzyme metabolic process;9.9163513342388e-05!GO:0005798;Golgi-associated vesicle;0.000104157842030558!GO:0051301;cell division;0.000105658407129667!GO:0030867;rough endoplasmic reticulum membrane;0.000112898742049438!GO:0033116;ER-Golgi intermediate compartment membrane;0.000117334484349232!GO:0006606;protein import into nucleus;0.000121182644685334!GO:0030133;transport vesicle;0.000121850815219826!GO:0006695;cholesterol biosynthetic process;0.000131672171220435!GO:0046930;pore complex;0.000133298210356098!GO:0005643;nuclear pore;0.000135804913244877!GO:0030176;integral to endoplasmic reticulum membrane;0.000167517439766287!GO:0003713;transcription coactivator activity;0.000167649226524999!GO:0032446;protein modification by small protein conjugation;0.000170596784460051!GO:0051329;interphase of mitotic cell cycle;0.000172231903170788!GO:0016779;nucleotidyltransferase activity;0.000174569189227833!GO:0007264;small GTPase mediated signal transduction;0.00018099067471376!GO:0000245;spliceosome assembly;0.00018099067471376!GO:0031968;organelle outer membrane;0.000188766977239035!GO:0008026;ATP-dependent helicase activity;0.000194924978799752!GO:0015980;energy derivation by oxidation of organic compounds;0.000197656638806185!GO:0016787;hydrolase activity;0.000198751429600808!GO:0019867;outer membrane;0.000200406463445592!GO:0043623;cellular protein complex assembly;0.000210181566374058!GO:0008092;cytoskeletal protein binding;0.000214747764886233!GO:0016567;protein ubiquitination;0.000219567962348875!GO:0016044;membrane organization and biogenesis;0.000263033301137894!GO:0016481;negative regulation of transcription;0.000291932698804631!GO:0005741;mitochondrial outer membrane;0.000305911605265431!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000328302313761878!GO:0019899;enzyme binding;0.000348993941641608!GO:0004386;helicase activity;0.000354893136526565!GO:0051325;interphase;0.00036346598662761!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000387351778568774!GO:0008250;oligosaccharyl transferase complex;0.000416271207762735!GO:0051427;hormone receptor binding;0.000430927703032104!GO:0032561;guanyl ribonucleotide binding;0.000467813569582777!GO:0019001;guanyl nucleotide binding;0.000467813569582777!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000480121082731445!GO:0000314;organellar small ribosomal subunit;0.000520546523367997!GO:0005763;mitochondrial small ribosomal subunit;0.000520546523367997!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000552199651257209!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000572032832508583!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000581729356013594!GO:0043566;structure-specific DNA binding;0.000598178987727941!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000604734448252764!GO:0006613;cotranslational protein targeting to membrane;0.000611749506893505!GO:0000151;ubiquitin ligase complex;0.000636736082713494!GO:0005769;early endosome;0.000661284763194276!GO:0048518;positive regulation of biological process;0.00070452358491764!GO:0015630;microtubule cytoskeleton;0.000749593999055754!GO:0030027;lamellipodium;0.000771244004174108!GO:0035257;nuclear hormone receptor binding;0.000779464034856225!GO:0040008;regulation of growth;0.000785757022343!GO:0018196;peptidyl-asparagine modification;0.000811999841974795!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000811999841974795!GO:0046467;membrane lipid biosynthetic process;0.000889944708016457!GO:0003899;DNA-directed RNA polymerase activity;0.000909853050972849!GO:0005885;Arp2/3 protein complex;0.00107741103991497!GO:0051920;peroxiredoxin activity;0.00109491022017849!GO:0006082;organic acid metabolic process;0.00109491022017849!GO:0016125;sterol metabolic process;0.0011259226589498!GO:0007243;protein kinase cascade;0.0011259226589498!GO:0005048;signal sequence binding;0.00113436994207153!GO:0030659;cytoplasmic vesicle membrane;0.00114967568719857!GO:0009165;nucleotide biosynthetic process;0.00117216817071668!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00120269335896281!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00121455612187309!GO:0006979;response to oxidative stress;0.00123848587602114!GO:0019752;carboxylic acid metabolic process;0.00129174126619031!GO:0030118;clathrin coat;0.00131834802922722!GO:0043681;protein import into mitochondrion;0.00135499877783105!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00146913586918313!GO:0030132;clathrin coat of coated pit;0.00151787495307297!GO:0065009;regulation of a molecular function;0.00157565831609393!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00171041696900724!GO:0042802;identical protein binding;0.0017195873515763!GO:0006403;RNA localization;0.00182987589450419!GO:0050657;nucleic acid transport;0.00183902340508126!GO:0051236;establishment of RNA localization;0.00183902340508126!GO:0050658;RNA transport;0.00183902340508126!GO:0031902;late endosome membrane;0.0019831231073223!GO:0006650;glycerophospholipid metabolic process;0.00203294190064161!GO:0046489;phosphoinositide biosynthetic process;0.00213983547013853!GO:0043488;regulation of mRNA stability;0.00213983547013853!GO:0043487;regulation of RNA stability;0.00213983547013853!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00215930316429159!GO:0000279;M phase;0.00218258397565882!GO:0045792;negative regulation of cell size;0.00226142510979895!GO:0006612;protein targeting to membrane;0.00260892919782485!GO:0008154;actin polymerization and/or depolymerization;0.00270296259200169!GO:0048471;perinuclear region of cytoplasm;0.00270361935458672!GO:0043021;ribonucleoprotein binding;0.00280725380321779!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00282612451907291!GO:0016860;intramolecular oxidoreductase activity;0.00285133995468424!GO:0030658;transport vesicle membrane;0.00288618823756!GO:0006790;sulfur metabolic process;0.00291803440000918!GO:0043284;biopolymer biosynthetic process;0.00302722413003181!GO:0030308;negative regulation of cell growth;0.00305347343878569!GO:0003724;RNA helicase activity;0.00323888100506367!GO:0007006;mitochondrial membrane organization and biogenesis;0.00327091067294474!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00327427042938723!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00327427042938723!GO:0006626;protein targeting to mitochondrion;0.00336438829311146!GO:0065007;biological regulation;0.00351717371742412!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00362160688213762!GO:0044255;cellular lipid metabolic process;0.00364826539746722!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0037347640200707!GO:0030663;COPI coated vesicle membrane;0.00375131593972995!GO:0030126;COPI vesicle coat;0.00375131593972995!GO:0030041;actin filament polymerization;0.00385862144935778!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00385862144935778!GO:0015002;heme-copper terminal oxidase activity;0.00385862144935778!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00385862144935778!GO:0004129;cytochrome-c oxidase activity;0.00385862144935778!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00389006015778996!GO:0045892;negative regulation of transcription, DNA-dependent;0.00395185037244568!GO:0001726;ruffle;0.00410197056699577!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00414974914851417!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00414974914851417!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00414974914851417!GO:0006414;translational elongation;0.00418649665733177!GO:0006839;mitochondrial transport;0.00425534308855909!GO:0017166;vinculin binding;0.00427522229647186!GO:0030137;COPI-coated vesicle;0.00428947460944948!GO:0006509;membrane protein ectodomain proteolysis;0.00429160271674267!GO:0033619;membrane protein proteolysis;0.00429160271674267!GO:0006740;NADPH regeneration;0.00447294807564937!GO:0006098;pentose-phosphate shunt;0.00447294807564937!GO:0044433;cytoplasmic vesicle part;0.00461959860435876!GO:0004576;oligosaccharyl transferase activity;0.00461959860435876!GO:0031301;integral to organelle membrane;0.00478740863641012!GO:0051087;chaperone binding;0.00503261565132072!GO:0045941;positive regulation of transcription;0.00513235342730527!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00513235342730527!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00513235342730527!GO:0006066;alcohol metabolic process;0.00526897837312834!GO:0008047;enzyme activator activity;0.00527916805439642!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00532921321783069!GO:0006778;porphyrin metabolic process;0.00532921321783069!GO:0033013;tetrapyrrole metabolic process;0.00532921321783069!GO:0008033;tRNA processing;0.00555829602918195!GO:0048468;cell development;0.00592873613157424!GO:0007050;cell cycle arrest;0.00596014228588094!GO:0005684;U2-dependent spliceosome;0.00604511763991432!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00631626873381754!GO:0045893;positive regulation of transcription, DNA-dependent;0.00660148546592085!GO:0006643;membrane lipid metabolic process;0.00660166819961851!GO:0040029;regulation of gene expression, epigenetic;0.00679486335541811!GO:0046483;heterocycle metabolic process;0.00698185115384593!GO:0006402;mRNA catabolic process;0.00705025176295545!GO:0005774;vacuolar membrane;0.00718012788892745!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00732247404228776!GO:0000786;nucleosome;0.00739718010821575!GO:0007040;lysosome organization and biogenesis;0.00745273560480254!GO:0005813;centrosome;0.00806308133680209!GO:0003756;protein disulfide isomerase activity;0.00812130344453054!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00812130344453054!GO:0030660;Golgi-associated vesicle membrane;0.00836774670876663!GO:0030119;AP-type membrane coat adaptor complex;0.00836960268059578!GO:0031543;peptidyl-proline dioxygenase activity;0.00854195522261994!GO:0030125;clathrin vesicle coat;0.00864094726302772!GO:0030665;clathrin coated vesicle membrane;0.00864094726302772!GO:0042168;heme metabolic process;0.00865717149174441!GO:0030134;ER to Golgi transport vesicle;0.00918223542569829!GO:0008186;RNA-dependent ATPase activity;0.0091929080418878!GO:0051168;nuclear export;0.0091931710460266!GO:0031072;heat shock protein binding;0.00945497237701064!GO:0005586;collagen type III;0.00951556671487669!GO:0008286;insulin receptor signaling pathway;0.00951556671487669!GO:0048487;beta-tubulin binding;0.00967659701619447!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00983820102279748!GO:0019798;procollagen-proline dioxygenase activity;0.00988186316953173!GO:0006950;response to stress;0.0100154810988197!GO:0030880;RNA polymerase complex;0.0102580492001582!GO:0006595;polyamine metabolic process;0.0107614492278423!GO:0030145;manganese ion binding;0.0114870259523593!GO:0008632;apoptotic program;0.0116988810784556!GO:0030131;clathrin adaptor complex;0.0126789319806873!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0128418652720911!GO:0006520;amino acid metabolic process;0.0129941107770734!GO:0006644;phospholipid metabolic process;0.0131239643342895!GO:0005862;muscle thin filament tropomyosin;0.0132925927183416!GO:0012506;vesicle membrane;0.0133152949278018!GO:0005581;collagen;0.0138291120417609!GO:0008203;cholesterol metabolic process;0.0139035828230145!GO:0007265;Ras protein signal transduction;0.0144478294045997!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0145417009353329!GO:0005815;microtubule organizing center;0.0145632205078016!GO:0030384;phosphoinositide metabolic process;0.0145869944429453!GO:0030127;COPII vesicle coat;0.0145869944429453!GO:0012507;ER to Golgi transport vesicle membrane;0.0145869944429453!GO:0005869;dynactin complex;0.0147601275755248!GO:0051128;regulation of cellular component organization and biogenesis;0.0147872548765081!GO:0051101;regulation of DNA binding;0.0148161144132318!GO:0006891;intra-Golgi vesicle-mediated transport;0.0149644853423454!GO:0005765;lysosomal membrane;0.0153867311417031!GO:0031272;regulation of pseudopodium formation;0.0153867311417031!GO:0031269;pseudopodium formation;0.0153867311417031!GO:0031344;regulation of cell projection organization and biogenesis;0.0153867311417031!GO:0031268;pseudopodium organization and biogenesis;0.0153867311417031!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0153867311417031!GO:0031274;positive regulation of pseudopodium formation;0.0153867311417031!GO:0006779;porphyrin biosynthetic process;0.0153867311417031!GO:0033014;tetrapyrrole biosynthetic process;0.0153867311417031!GO:0045926;negative regulation of growth;0.0158670282114874!GO:0051287;NAD binding;0.0164884624849399!GO:0051028;mRNA transport;0.0165896144888849!GO:0016272;prefoldin complex;0.0166848640977921!GO:0035258;steroid hormone receptor binding;0.016957657806389!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0170435163044921!GO:0033673;negative regulation of kinase activity;0.0170435163044921!GO:0006469;negative regulation of protein kinase activity;0.0170435163044921!GO:0003729;mRNA binding;0.0173504869246931!GO:0007033;vacuole organization and biogenesis;0.0177156043126545!GO:0044437;vacuolar part;0.0178887481119423!GO:0035035;histone acetyltransferase binding;0.0182608633142482!GO:0006007;glucose catabolic process;0.0185297743526291!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0185297743526291!GO:0016197;endosome transport;0.0185830865548369!GO:0051252;regulation of RNA metabolic process;0.0186410248660921!GO:0009967;positive regulation of signal transduction;0.0194682624791943!GO:0006739;NADP metabolic process;0.0194682624791943!GO:0004860;protein kinase inhibitor activity;0.0201275664339964!GO:0006497;protein amino acid lipidation;0.0203979456110295!GO:0006897;endocytosis;0.0203979456110295!GO:0010324;membrane invagination;0.0203979456110295!GO:0006506;GPI anchor biosynthetic process;0.0205271643971566!GO:0004004;ATP-dependent RNA helicase activity;0.0206097938602725!GO:0033559;unsaturated fatty acid metabolic process;0.0207160681715855!GO:0006636;unsaturated fatty acid biosynthetic process;0.0207160681715855!GO:0042158;lipoprotein biosynthetic process;0.0208922223341088!GO:0051235;maintenance of localization;0.0209914441782831!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0210197602171639!GO:0000428;DNA-directed RNA polymerase complex;0.0210197602171639!GO:0006383;transcription from RNA polymerase III promoter;0.0210969178213066!GO:0051348;negative regulation of transferase activity;0.0213174984059511!GO:0006769;nicotinamide metabolic process;0.0213296857778069!GO:0008139;nuclear localization sequence binding;0.0214054764360593!GO:0006401;RNA catabolic process;0.0215039586428607!GO:0031529;ruffle organization and biogenesis;0.0218880189318454!GO:0006749;glutathione metabolic process;0.0218880189318454!GO:0004680;casein kinase activity;0.0225564491546014!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0228463232088663!GO:0006807;nitrogen compound metabolic process;0.0229213166877881!GO:0015631;tubulin binding;0.0233544141732522!GO:0009303;rRNA transcription;0.0233688446342438!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0234844478378052!GO:0015399;primary active transmembrane transporter activity;0.0234844478378052!GO:0006783;heme biosynthetic process;0.0240780021519193!GO:0030833;regulation of actin filament polymerization;0.0240780021519193!GO:0003779;actin binding;0.0244327939807984!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0249123478750842!GO:0006818;hydrogen transport;0.0257605758675121!GO:0004364;glutathione transferase activity;0.0257746947963713!GO:0004177;aminopeptidase activity;0.0260046320858437!GO:0006458;'de novo' protein folding;0.0260842665526591!GO:0051084;'de novo' posttranslational protein folding;0.0260842665526591!GO:0044452;nucleolar part;0.0260842665526591!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0262574788360955!GO:0006733;oxidoreduction coenzyme metabolic process;0.0262574788360955!GO:0015992;proton transport;0.0262737943193627!GO:0006505;GPI anchor metabolic process;0.026311893049971!GO:0005975;carbohydrate metabolic process;0.0263467561978038!GO:0000902;cell morphogenesis;0.0264452655210878!GO:0032989;cellular structure morphogenesis;0.0264452655210878!GO:0003746;translation elongation factor activity;0.0264452655210878!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0265024296996734!GO:0033043;regulation of organelle organization and biogenesis;0.0265024296996734!GO:0019318;hexose metabolic process;0.0273422872368149!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0273630573057635!GO:0007346;regulation of progression through mitotic cell cycle;0.0273630573057635!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0273665016709551!GO:0008147;structural constituent of bone;0.0273863165340663!GO:0006672;ceramide metabolic process;0.0275071440431823!GO:0043065;positive regulation of apoptosis;0.0276000201803347!GO:0046519;sphingoid metabolic process;0.0276594747381963!GO:0006629;lipid metabolic process;0.0284140477335227!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0284180813336869!GO:0051098;regulation of binding;0.0284881977774658!GO:0031418;L-ascorbic acid binding;0.0286381107259285!GO:0000049;tRNA binding;0.0290076168912372!GO:0043068;positive regulation of programmed cell death;0.0291677396158689!GO:0005996;monosaccharide metabolic process;0.0292223941438951!GO:0030100;regulation of endocytosis;0.0301498435130228!GO:0006767;water-soluble vitamin metabolic process;0.0301498435130228!GO:0005092;GDP-dissociation inhibitor activity;0.0306591366805939!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0311897200132539!GO:0050790;regulation of catalytic activity;0.0311897200132539!GO:0008538;proteasome activator activity;0.0315410035575851!GO:0008243;plasminogen activator activity;0.0320656912204738!GO:0048500;signal recognition particle;0.0320656912204738!GO:0051651;maintenance of cellular localization;0.0322833705607275!GO:0006118;electron transport;0.0322833705607275!GO:0006487;protein amino acid N-linked glycosylation;0.0325037349527967!GO:0005096;GTPase activator activity;0.0328971961237804!GO:0050662;coenzyme binding;0.0330493959388213!GO:0008637;apoptotic mitochondrial changes;0.0331640467528247!GO:0030433;ER-associated protein catabolic process;0.0332264772742192!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0332264772742192!GO:0000096;sulfur amino acid metabolic process;0.0335738571415904!GO:0016301;kinase activity;0.0336158706112248!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0337971953500169!GO:0001516;prostaglandin biosynthetic process;0.034353121966449!GO:0046457;prostanoid biosynthetic process;0.034353121966449!GO:0030128;clathrin coat of endocytic vesicle;0.0344321462532951!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0344321462532951!GO:0030122;AP-2 adaptor complex;0.0344321462532951!GO:0032508;DNA duplex unwinding;0.0345948355505402!GO:0032392;DNA geometric change;0.0345948355505402!GO:0030521;androgen receptor signaling pathway;0.0357751155482146!GO:0045334;clathrin-coated endocytic vesicle;0.0358395823707703!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0358395823707703!GO:0008629;induction of apoptosis by intracellular signals;0.0360210350818493!GO:0032507;maintenance of cellular protein localization;0.0360210350818493!GO:0006633;fatty acid biosynthetic process;0.036118616220244!GO:0001666;response to hypoxia;0.0361898014046145!GO:0006289;nucleotide-excision repair;0.0365981505482022!GO:0003684;damaged DNA binding;0.0369130548580655!GO:0000123;histone acetyltransferase complex;0.037651052585377!GO:0003711;transcription elongation regulator activity;0.0391227094964505!GO:0005819;spindle;0.039367522673629!GO:0030508;thiol-disulfide exchange intermediate activity;0.0397537799685871!GO:0000209;protein polyubiquitination;0.0406392337436733!GO:0016363;nuclear matrix;0.0407157937049522!GO:0043414;biopolymer methylation;0.0411502988479279!GO:0009112;nucleobase metabolic process;0.0420780842648174!GO:0051270;regulation of cell motility;0.0426101138299224!GO:0046394;carboxylic acid biosynthetic process;0.0427629386657741!GO:0016053;organic acid biosynthetic process;0.0427629386657741!GO:0045185;maintenance of protein localization;0.042908050091422!GO:0005583;fibrillar collagen;0.0443820962711741!GO:0005874;microtubule;0.0445971239492316!GO:0009966;regulation of signal transduction;0.0446350781467853!GO:0009308;amine metabolic process;0.0446350781467853!GO:0006611;protein export from nucleus;0.0450990956613161!GO:0031300;intrinsic to organelle membrane;0.0462195595887579!GO:0043189;H4/H2A histone acetyltransferase complex;0.0465424119275558!GO:0051539;4 iron, 4 sulfur cluster binding;0.0468767793906832!GO:0008652;amino acid biosynthetic process;0.0469487045471447!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0470452600513067!GO:0010257;NADH dehydrogenase complex assembly;0.0470452600513067!GO:0033108;mitochondrial respiratory chain complex assembly;0.0470452600513067!GO:0022890;inorganic cation transmembrane transporter activity;0.0471662560847831!GO:0015036;disulfide oxidoreductase activity;0.0480499897034792!GO:0000030;mannosyltransferase activity;0.0484860590680546!GO:0000082;G1/S transition of mitotic cell cycle;0.0491322173922355!GO:0005100;Rho GTPase activator activity;0.0491322173922355!GO:0007021;tubulin folding;0.0491322173922355!GO:0048011;nerve growth factor receptor signaling pathway;0.0495771724358703 | |||
|sample_id=11524 | |sample_id=11524 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=TAL1_TCF{3,4,12}:2.31665055124;GLI1..3:2.19685194119;ZNF423:1.93349072449;HOX{A5,B5}:1.91350887065;RXRA_VDR{dimer}:1.69340427647;TFAP4:1.47910930477;EBF1:1.43337578942;TFCP2:1.38612789999;TLX1..3_NFIC{dimer}:1.35694127044;ESR1:1.32253880387;LHX3,4:1.28849350232;GTF2A1,2:1.28475011251;ZNF238:1.24641983659;ZNF148:1.19877619479;XCPE1{core}:1.06330113555;TEAD1:1.02406062767;SMAD1..7,9:1.023019051;SRF:1.00232378824;NR6A1:0.945466306788;HAND1,2:0.910918431832;GTF2I:0.870867536247;NANOG:0.863081683037;PAX5:0.829867648812;HNF1A:0.814851231556;NR5A1,2:0.787902452892;ZIC1..3:0.760309597875;HIC1:0.719642832799;IKZF1:0.712007525181;NR1H4:0.706925272729;PATZ1:0.697896165806;TFAP2{A,C}:0.679793438569;MAZ:0.672887838896;SP1:0.666233465644;ZBTB6:0.660022050112;RREB1:0.658217590059;DBP:0.652846053869;EP300:0.652655740198;ATF6:0.637089305984;bHLH_family:0.601373667691;EN1,2:0.596969735694;GZF1:0.582562776851;MYBL2:0.552722087405;HES1:0.543095850589;HOXA9_MEIS1:0.522114461282;TP53:0.503096826431;ZNF384:0.491956076167;SPZ1:0.491530702728;CRX:0.490125983354;TBP:0.465590043641;HNF4A_NR2F1,2:0.452794252958;TFAP2B:0.436571522759;REST:0.431895006304;MZF1:0.421625081354;LEF1_TCF7_TCF7L1,2:0.408523028206;PBX1:0.408202958353;FOXM1:0.356154335782;GFI1B:0.3509944833;MTE{core}:0.333761332887;STAT2,4,6:0.325399620114;TBX4,5:0.307178207358;TOPORS:0.303188962146;STAT5{A,B}:0.301591687236;SOX17:0.286681187797;AR:0.271333374859;XBP1:0.216064607832;GFI1:0.20869170355;GATA6:0.194771484582;ESRRA:0.188711319084;HOX{A6,A7,B6,B7}:0.176628353464;ONECUT1,2:0.152549579643;RXR{A,B,G}:0.132960958238;MEF2{A,B,C,D}:0.120216745282;NFE2L2:0.114572173603;LMO2:0.111044655509;KLF4:0.106985848329;CDC5L:0.0999668250514;UFEwm:0.0778414213173;NKX3-1:0.0750630209568;PAX1,9:0.0702513612778;HMX1:0.0510289064097;EGR1..3:0.021642280953;NKX2-3_NKX2-5:0.0160381283334;RORA:-0.00578738292813;NR3C1:-0.00912849962997;NFATC1..3:-0.0280177893438;FOXP3:-0.0310155453762;NFY{A,B,C}:-0.0324621083134;FOS_FOS{B,L1}_JUN{B,D}:-0.0353276141437;EVI1:-0.0478589918028;HSF1,2:-0.0566534577172;POU5F1:-0.0601275893344;HOX{A4,D4}:-0.0639188690618;NANOG{mouse}:-0.0678455974236;NFE2L1:-0.0691845137503;RFX1:-0.0750142357059;PRRX1,2:-0.113612651836;SOX5:-0.121414723165;ALX4:-0.128795290535;SOX{8,9,10}:-0.136436125371;GCM1,2:-0.147713333055;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.153606912419;HLF:-0.159166926313;JUN:-0.161679917713;GATA4:-0.177328498026;ZNF143:-0.178300744622;POU2F1..3:-0.18634234134;NFKB1_REL_RELA:-0.192262624553;BACH2:-0.192428429747;NFE2:-0.209334380011;MTF1:-0.211088986664;YY1:-0.228104515367;NHLH1,2:-0.228134163116;ETS1,2:-0.231152827213;POU3F1..4:-0.231960168768;ADNP_IRX_SIX_ZHX:-0.25280245161;HMGA1,2:-0.254930197591;SNAI1..3:-0.257746113475;PRDM1:-0.260617159422;MED-1{core}:-0.272331498129;FOX{D1,D2}:-0.284057550825;MAFB:-0.291586593689;FOSL2:-0.295823113189;FOX{F1,F2,J1}:-0.296497239588;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.29674206513;RUNX1..3:-0.310358535391;AHR_ARNT_ARNT2:-0.322175040568;NKX6-1,2:-0.323909948366;MYFfamily:-0.324549412351;NFIX:-0.350370915245;STAT1,3:-0.35286275241;E2F1..5:-0.366386096081;NKX2-2,8:-0.36771453073;MYOD1:-0.408220504453;PPARG:-0.408456099975;NKX3-2:-0.414429950309;POU6F1:-0.450334589077;BREu{core}:-0.46845587027;FOXL1:-0.479532098893;CEBPA,B_DDIT3:-0.481476762701;PAX8:-0.492706046771;SOX2:-0.500464111817;OCT4_SOX2{dimer}:-0.50875621711;HIF1A:-0.522283840273;TFDP1:-0.534293723773;NKX2-1,4:-0.545945451634;SPIB:-0.551672642719;PAX3,7:-0.561386813859;ATF2:-0.563547806077;PAX6:-0.572014677716;TEF:-0.582663588747;CUX2:-0.602145433503;ZEB1:-0.607112705263;ARID5B:-0.612605883191;PAX4:-0.615658206008;CDX1,2,4:-0.629694431619;T:-0.645191732131;ZFP161:-0.655080901097;TGIF1:-0.659997715785;NFIL3:-0.699469489176;IRF1,2:-0.702246451972;SPI1:-0.704471793623;FOX{I1,J2}:-0.706774589247;IRF7:-0.735718138883;NRF1:-0.765189074908;FOXA2:-0.771378854557;TLX2:-0.773771883332;AIRE:-0.807912334358;FOXO1,3,4:-0.825555379438;RBPJ:-0.833848362218;POU1F1:-0.847256494284;MYB:-0.85676633534;HBP1_HMGB_SSRP1_UBTF:-0.874684020243;PDX1:-0.912094541265;VSX1,2:-0.922285939168;PAX2:-0.990573559289;FOXP1:-1.00194096059;FOXQ1:-1.00702917586;ELK1,4_GABP{A,B1}:-1.0395289252;PITX1..3:-1.04328239008;ATF4:-1.05537494238;DMAP1_NCOR{1,2}_SMARC:-1.06295932715;RFX2..5_RFXANK_RFXAP:-1.0803128785;ATF5_CREB3:-1.14000389775;ELF1,2,4:-1.17646187919;SREBF1,2:-1.22151676531;CREB1:-1.23641508536;FOXD3:-1.24624304519;ALX1:-1.29995388505;BPTF:-1.34091643063;IKZF2:-1.70671925774;ZBTB16:-1.84302840142;FOXN1:-1.9962878125 | |top_motifs=TAL1_TCF{3,4,12}:2.31665055124;GLI1..3:2.19685194119;ZNF423:1.93349072449;HOX{A5,B5}:1.91350887065;RXRA_VDR{dimer}:1.69340427647;TFAP4:1.47910930477;EBF1:1.43337578942;TFCP2:1.38612789999;TLX1..3_NFIC{dimer}:1.35694127044;ESR1:1.32253880387;LHX3,4:1.28849350232;GTF2A1,2:1.28475011251;ZNF238:1.24641983659;ZNF148:1.19877619479;XCPE1{core}:1.06330113555;TEAD1:1.02406062767;SMAD1..7,9:1.023019051;SRF:1.00232378824;NR6A1:0.945466306788;HAND1,2:0.910918431832;GTF2I:0.870867536247;NANOG:0.863081683037;PAX5:0.829867648812;HNF1A:0.814851231556;NR5A1,2:0.787902452892;ZIC1..3:0.760309597875;HIC1:0.719642832799;IKZF1:0.712007525181;NR1H4:0.706925272729;PATZ1:0.697896165806;TFAP2{A,C}:0.679793438569;MAZ:0.672887838896;SP1:0.666233465644;ZBTB6:0.660022050112;RREB1:0.658217590059;DBP:0.652846053869;EP300:0.652655740198;ATF6:0.637089305984;bHLH_family:0.601373667691;EN1,2:0.596969735694;GZF1:0.582562776851;MYBL2:0.552722087405;HES1:0.543095850589;HOXA9_MEIS1:0.522114461282;TP53:0.503096826431;ZNF384:0.491956076167;SPZ1:0.491530702728;CRX:0.490125983354;TBP:0.465590043641;HNF4A_NR2F1,2:0.452794252958;TFAP2B:0.436571522759;REST:0.431895006304;MZF1:0.421625081354;LEF1_TCF7_TCF7L1,2:0.408523028206;PBX1:0.408202958353;FOXM1:0.356154335782;GFI1B:0.3509944833;MTE{core}:0.333761332887;STAT2,4,6:0.325399620114;TBX4,5:0.307178207358;TOPORS:0.303188962146;STAT5{A,B}:0.301591687236;SOX17:0.286681187797;AR:0.271333374859;XBP1:0.216064607832;GFI1:0.20869170355;GATA6:0.194771484582;ESRRA:0.188711319084;HOX{A6,A7,B6,B7}:0.176628353464;ONECUT1,2:0.152549579643;RXR{A,B,G}:0.132960958238;MEF2{A,B,C,D}:0.120216745282;NFE2L2:0.114572173603;LMO2:0.111044655509;KLF4:0.106985848329;CDC5L:0.0999668250514;UFEwm:0.0778414213173;NKX3-1:0.0750630209568;PAX1,9:0.0702513612778;HMX1:0.0510289064097;EGR1..3:0.021642280953;NKX2-3_NKX2-5:0.0160381283334;RORA:-0.00578738292813;NR3C1:-0.00912849962997;NFATC1..3:-0.0280177893438;FOXP3:-0.0310155453762;NFY{A,B,C}:-0.0324621083134;FOS_FOS{B,L1}_JUN{B,D}:-0.0353276141437;EVI1:-0.0478589918028;HSF1,2:-0.0566534577172;POU5F1:-0.0601275893344;HOX{A4,D4}:-0.0639188690618;NANOG{mouse}:-0.0678455974236;NFE2L1:-0.0691845137503;RFX1:-0.0750142357059;PRRX1,2:-0.113612651836;SOX5:-0.121414723165;ALX4:-0.128795290535;SOX{8,9,10}:-0.136436125371;GCM1,2:-0.147713333055;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.153606912419;HLF:-0.159166926313;JUN:-0.161679917713;GATA4:-0.177328498026;ZNF143:-0.178300744622;POU2F1..3:-0.18634234134;NFKB1_REL_RELA:-0.192262624553;BACH2:-0.192428429747;NFE2:-0.209334380011;MTF1:-0.211088986664;YY1:-0.228104515367;NHLH1,2:-0.228134163116;ETS1,2:-0.231152827213;POU3F1..4:-0.231960168768;ADNP_IRX_SIX_ZHX:-0.25280245161;HMGA1,2:-0.254930197591;SNAI1..3:-0.257746113475;PRDM1:-0.260617159422;MED-1{core}:-0.272331498129;FOX{D1,D2}:-0.284057550825;MAFB:-0.291586593689;FOSL2:-0.295823113189;FOX{F1,F2,J1}:-0.296497239588;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.29674206513;RUNX1..3:-0.310358535391;AHR_ARNT_ARNT2:-0.322175040568;NKX6-1,2:-0.323909948366;MYFfamily:-0.324549412351;NFIX:-0.350370915245;STAT1,3:-0.35286275241;E2F1..5:-0.366386096081;NKX2-2,8:-0.36771453073;MYOD1:-0.408220504453;PPARG:-0.408456099975;NKX3-2:-0.414429950309;POU6F1:-0.450334589077;BREu{core}:-0.46845587027;FOXL1:-0.479532098893;CEBPA,B_DDIT3:-0.481476762701;PAX8:-0.492706046771;SOX2:-0.500464111817;OCT4_SOX2{dimer}:-0.50875621711;HIF1A:-0.522283840273;TFDP1:-0.534293723773;NKX2-1,4:-0.545945451634;SPIB:-0.551672642719;PAX3,7:-0.561386813859;ATF2:-0.563547806077;PAX6:-0.572014677716;TEF:-0.582663588747;CUX2:-0.602145433503;ZEB1:-0.607112705263;ARID5B:-0.612605883191;PAX4:-0.615658206008;CDX1,2,4:-0.629694431619;T:-0.645191732131;ZFP161:-0.655080901097;TGIF1:-0.659997715785;NFIL3:-0.699469489176;IRF1,2:-0.702246451972;SPI1:-0.704471793623;FOX{I1,J2}:-0.706774589247;IRF7:-0.735718138883;NRF1:-0.765189074908;FOXA2:-0.771378854557;TLX2:-0.773771883332;AIRE:-0.807912334358;FOXO1,3,4:-0.825555379438;RBPJ:-0.833848362218;POU1F1:-0.847256494284;MYB:-0.85676633534;HBP1_HMGB_SSRP1_UBTF:-0.874684020243;PDX1:-0.912094541265;VSX1,2:-0.922285939168;PAX2:-0.990573559289;FOXP1:-1.00194096059;FOXQ1:-1.00702917586;ELK1,4_GABP{A,B1}:-1.0395289252;PITX1..3:-1.04328239008;ATF4:-1.05537494238;DMAP1_NCOR{1,2}_SMARC:-1.06295932715;RFX2..5_RFXANK_RFXAP:-1.0803128785;ATF5_CREB3:-1.14000389775;ELF1,2,4:-1.17646187919;SREBF1,2:-1.22151676531;CREB1:-1.23641508536;FOXD3:-1.24624304519;ALX1:-1.29995388505;BPTF:-1.34091643063;IKZF2:-1.70671925774;ZBTB16:-1.84302840142;FOXN1:-1.9962878125 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11524-119I3;search_select_hide=table117:FF:11524-119I3 | |||
}} | }} | ||
Latest revision as of 18:06, 4 June 2020
| Name: | Hepatic Stellate Cells (lipocyte), donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11335 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11335
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11335
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.781 |
| 10 | 10 | 0.0937 |
| 100 | 100 | 0.652 |
| 101 | 101 | 0.587 |
| 102 | 102 | 0.588 |
| 103 | 103 | 0.66 |
| 104 | 104 | 0.369 |
| 105 | 105 | 0.0559 |
| 106 | 106 | 0.0823 |
| 107 | 107 | 0.00971 |
| 108 | 108 | 0.848 |
| 109 | 109 | 0.481 |
| 11 | 11 | 0.258 |
| 110 | 110 | 0.183 |
| 111 | 111 | 0.231 |
| 112 | 112 | 0.615 |
| 113 | 113 | 0.364 |
| 114 | 114 | 0.589 |
| 115 | 115 | 0.534 |
| 116 | 116 | 0.0265 |
| 117 | 117 | 0.335 |
| 118 | 118 | 0.942 |
| 119 | 119 | 0.715 |
| 12 | 12 | 0.583 |
| 120 | 120 | 0.969 |
| 121 | 121 | 0.878 |
| 122 | 122 | 0.354 |
| 123 | 123 | 0.00938 |
| 124 | 124 | 0.659 |
| 125 | 125 | 0.205 |
| 126 | 126 | 0.83 |
| 127 | 127 | 0.959 |
| 128 | 128 | 0.0855 |
| 129 | 129 | 0.897 |
| 13 | 13 | 0.869 |
| 130 | 130 | 0.214 |
| 131 | 131 | 0.588 |
| 132 | 132 | 0.22 |
| 133 | 133 | 0.348 |
| 134 | 134 | 0.244 |
| 135 | 135 | 0.223 |
| 136 | 136 | 0.53 |
| 137 | 137 | 0.141 |
| 138 | 138 | 0.367 |
| 139 | 139 | 0.832 |
| 14 | 14 | 0.953 |
| 140 | 140 | 0.989 |
| 141 | 141 | 0.575 |
| 142 | 142 | 0.875 |
| 143 | 143 | 0.186 |
| 144 | 144 | 0.726 |
| 145 | 145 | 0.439 |
| 146 | 146 | 0.238 |
| 147 | 147 | 0.621 |
| 148 | 148 | 0.447 |
| 149 | 149 | 0.00998 |
| 15 | 15 | 0.788 |
| 150 | 150 | 0.321 |
| 151 | 151 | 0.502 |
| 152 | 152 | 0.104 |
| 153 | 153 | 0.163 |
| 154 | 154 | 0.398 |
| 155 | 155 | 0.3 |
| 156 | 156 | 0.531 |
| 157 | 157 | 0.258 |
| 158 | 158 | 0.0646 |
| 159 | 159 | 0.93 |
| 16 | 16 | 0.108 |
| 160 | 160 | 0.0421 |
| 161 | 161 | 0.582 |
| 162 | 162 | 0.161 |
| 163 | 163 | 0.611 |
| 164 | 164 | 0.68 |
| 165 | 165 | 0.229 |
| 166 | 166 | 0.0841 |
| 167 | 167 | 0.0647 |
| 168 | 168 | 0.817 |
| 169 | 169 | 0.0429 |
| 17 | 17 | 0.271 |
| 18 | 18 | 0.163 |
| 19 | 19 | 0.0603 |
| 2 | 2 | 0.104 |
| 20 | 20 | 0.307 |
| 21 | 21 | 0.876 |
| 22 | 22 | 0.0896 |
| 23 | 23 | 0.195 |
| 24 | 24 | 0.733 |
| 25 | 25 | 0.579 |
| 26 | 26 | 0.0681 |
| 27 | 27 | 0.356 |
| 28 | 28 | 0.337 |
| 29 | 29 | 0.626 |
| 3 | 3 | 0.935 |
| 30 | 30 | 0.0403 |
| 31 | 31 | 0.354 |
| 32 | 32 | 1.25526e-11 |
| 33 | 33 | 0.768 |
| 34 | 34 | 0.0763 |
| 35 | 35 | 0.722 |
| 36 | 36 | 0.19 |
| 37 | 37 | 0.567 |
| 38 | 38 | 0.81 |
| 39 | 39 | 0.17 |
| 4 | 4 | 0.483 |
| 40 | 40 | 0.224 |
| 41 | 41 | 0.381 |
| 42 | 42 | 0.913 |
| 43 | 43 | 0.306 |
| 44 | 44 | 0.749 |
| 45 | 45 | 0.149 |
| 46 | 46 | 0.322 |
| 47 | 47 | 0.677 |
| 48 | 48 | 0.377 |
| 49 | 49 | 0.367 |
| 5 | 5 | 0.891 |
| 50 | 50 | 0.35 |
| 51 | 51 | 0.328 |
| 52 | 52 | 0.252 |
| 53 | 53 | 0.683 |
| 54 | 54 | 0.435 |
| 55 | 55 | 0.964 |
| 56 | 56 | 0.408 |
| 57 | 57 | 0.738 |
| 58 | 58 | 0.483 |
| 59 | 59 | 0.0599 |
| 6 | 6 | 0.442 |
| 60 | 60 | 0.332 |
| 61 | 61 | 0.882 |
| 62 | 62 | 0.648 |
| 63 | 63 | 0.273 |
| 64 | 64 | 0.387 |
| 65 | 65 | 0.143 |
| 66 | 66 | 0.624 |
| 67 | 67 | 0.864 |
| 68 | 68 | 0.0533 |
| 69 | 69 | 0.139 |
| 7 | 7 | 0.823 |
| 70 | 70 | 0.291 |
| 71 | 71 | 0.623 |
| 72 | 72 | 0.751 |
| 73 | 73 | 0.22 |
| 74 | 74 | 0.563 |
| 75 | 75 | 0.747 |
| 76 | 76 | 0.234 |
| 77 | 77 | 0.0158 |
| 78 | 78 | 0.595 |
| 79 | 79 | 0.148 |
| 8 | 8 | 0.2 |
| 80 | 80 | 0.81 |
| 81 | 81 | 0.784 |
| 82 | 82 | 0.412 |
| 83 | 83 | 0.828 |
| 84 | 84 | 0.771 |
| 85 | 85 | 0.115 |
| 86 | 86 | 0.738 |
| 87 | 87 | 0.417 |
| 88 | 88 | 0.574 |
| 89 | 89 | 0.195 |
| 9 | 9 | 0.352 |
| 90 | 90 | 0.0286 |
| 91 | 91 | 0.196 |
| 92 | 92 | 0.659 |
| 93 | 93 | 0.904 |
| 94 | 94 | 0.852 |
| 95 | 95 | 0.689 |
| 96 | 96 | 0.856 |
| 97 | 97 | 0.5 |
| 98 | 98 | 0.976 |
| 99 | 99 | 0.00259 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11335
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000077 hepatic stellate cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000632 (hepatic stellate cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000077 (hepatic stellate cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
