FF:12184-129A6: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	Whole blood (ribopure), donor090612, donation3
Species:	Human (Homo sapiens)
Library ID:	CNhs11949,RDhi10005
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013680

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11949		CAGE		DRX008536		DRR009408
RDhi10005		RNA-Seq		DRX012358		DRR013806

Accession ID Hg19

Library id		BAM		CTSS
CNhs11949		DRZ000833		DRZ002218
RDhi10005		DRZ003007

Accession ID Hg38

Library id		BAM		CTSS
CNhs11949		DRZ012183		DRZ013568
RDhi10005

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.196
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.254
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.37
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.254
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	1.247
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.254
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.135
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.494
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.352
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.529
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.158
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.413
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.23
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.254
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.534
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.529
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.818
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.254
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0541
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.144
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.233
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.529
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.2
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.62
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.581
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.222
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.62
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.76
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0959
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.254
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.254
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.915
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.222
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.413
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11949

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.46686e-8
MA0003.1	MA0003.1	0.0824
MA0004.1	MA0004.1	0.48
MA0006.1	MA0006.1	0.428
MA0007.1	MA0007.1	0.916
MA0009.1	MA0009.1	0.0635
MA0014.1	MA0014.1	0.852
MA0017.1	MA0017.1	0.107
MA0018.2	MA0018.2	0.0106
MA0019.1	MA0019.1	0.208
MA0024.1	MA0024.1	0.0125
MA0025.1	MA0025.1	0.379
MA0027.1	MA0027.1	0.452
MA0028.1	MA0028.1	0.821
MA0029.1	MA0029.1	0.666
MA0030.1	MA0030.1	0.349
MA0031.1	MA0031.1	0.00106
MA0035.2	MA0035.2	9.68221e-5
MA0038.1	MA0038.1	0.00141
MA0039.2	MA0039.2	0.482
MA0040.1	MA0040.1	0.35
MA0041.1	MA0041.1	0.749
MA0042.1	MA0042.1	0.639
MA0043.1	MA0043.1	0.347
MA0046.1	MA0046.1	0.239
MA0047.2	MA0047.2	0.505
MA0048.1	MA0048.1	0.246
MA0050.1	MA0050.1	4.84187e-7
MA0051.1	MA0051.1	0.0282
MA0052.1	MA0052.1	0.00593
MA0055.1	MA0055.1	0.0477
MA0057.1	MA0057.1	0.906
MA0058.1	MA0058.1	0.471
MA0059.1	MA0059.1	0.51
MA0060.1	MA0060.1	1.38249e-5
MA0061.1	MA0061.1	0.108
MA0062.2	MA0062.2	0.00848
MA0065.2	MA0065.2	0.127
MA0066.1	MA0066.1	0.29
MA0067.1	MA0067.1	0.428
MA0068.1	MA0068.1	0.876
MA0069.1	MA0069.1	0.629
MA0070.1	MA0070.1	0.00403
MA0071.1	MA0071.1	0.617
MA0072.1	MA0072.1	0.761
MA0073.1	MA0073.1	0.185
MA0074.1	MA0074.1	0.576
MA0076.1	MA0076.1	0.724
MA0077.1	MA0077.1	0.425
MA0078.1	MA0078.1	0.829
MA0079.2	MA0079.2	0.696
MA0080.2	MA0080.2	3.81245e-17
MA0081.1	MA0081.1	0.005
MA0083.1	MA0083.1	0.505
MA0084.1	MA0084.1	0.535
MA0087.1	MA0087.1	0.998
MA0088.1	MA0088.1	0.306
MA0090.1	MA0090.1	0.0211
MA0091.1	MA0091.1	0.223
MA0092.1	MA0092.1	0.799
MA0093.1	MA0093.1	0.346
MA0099.2	MA0099.2	0.0426
MA0100.1	MA0100.1	0.937
MA0101.1	MA0101.1	0.949
MA0102.2	MA0102.2	0.00742
MA0103.1	MA0103.1	0.128
MA0104.2	MA0104.2	0.334
MA0105.1	MA0105.1	5.53908e-4
MA0106.1	MA0106.1	0.385
MA0107.1	MA0107.1	0.75
MA0108.2	MA0108.2	1.14959e-5
MA0111.1	MA0111.1	0.217
MA0112.2	MA0112.2	0.00191
MA0113.1	MA0113.1	0.746
MA0114.1	MA0114.1	0.42
MA0115.1	MA0115.1	0.748
MA0116.1	MA0116.1	1.21947e-5
MA0117.1	MA0117.1	0.562
MA0119.1	MA0119.1	0.493
MA0122.1	MA0122.1	0.394
MA0124.1	MA0124.1	0.74
MA0125.1	MA0125.1	0.142
MA0131.1	MA0131.1	0.594
MA0135.1	MA0135.1	0.497
MA0136.1	MA0136.1	5.58318e-21
MA0137.2	MA0137.2	0.963
MA0138.2	MA0138.2	0.293
MA0139.1	MA0139.1	0.194
MA0140.1	MA0140.1	8.6472e-14
MA0141.1	MA0141.1	0.717
MA0142.1	MA0142.1	0.353
MA0143.1	MA0143.1	0.304
MA0144.1	MA0144.1	0.359
MA0145.1	MA0145.1	0.121
MA0146.1	MA0146.1	0.00125
MA0147.1	MA0147.1	0.347
MA0148.1	MA0148.1	0.967
MA0149.1	MA0149.1	0.409
MA0150.1	MA0150.1	0.146
MA0152.1	MA0152.1	0.0654
MA0153.1	MA0153.1	0.0148
MA0154.1	MA0154.1	0.00536
MA0155.1	MA0155.1	0.88
MA0156.1	MA0156.1	1.17448e-12
MA0157.1	MA0157.1	0.00248
MA0159.1	MA0159.1	0.12
MA0160.1	MA0160.1	0.721
MA0162.1	MA0162.1	0.447
MA0163.1	MA0163.1	1.5882e-5
MA0164.1	MA0164.1	0.754
MA0258.1	MA0258.1	0.0106
MA0259.1	MA0259.1	0.209

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11949

Novel motif	Logo	P-value
1	1	0.164
10	10	0.0494
100	100	0.757
101	101	0.177
102	102	0.545
103	103	0.367
104	104	0.835
105	105	0.247
106	106	0.0191
107	107	0.438
108	108	0.936
109	109	0.134
11	11	0.0934
110	110	0.342
111	111	0.293
112	112	0.101
113	113	0.224
114	114	0.0536
115	115	0.795
116	116	0.541
117	117	0.0431
118	118	0.407
119	119	0.287
12	12	0.384
120	120	0.534
121	121	0.89
122	122	0.545
123	123	0.0122
124	124	0.327
125	125	0.17
126	126	0.427
127	127	0.289
128	128	0.0556
129	129	0.58
13	13	0.782
130	130	0.436
131	131	0.767
132	132	0.969
133	133	0.756
134	134	0.724
135	135	0.512
136	136	0.728
137	137	0.0115
138	138	0.0397
139	139	0.0169
14	14	0.235
140	140	0.591
141	141	0.5
142	142	0.607
143	143	0.00102
144	144	0.686
145	145	0.122
146	146	0.916
147	147	0.0673
148	148	0.275
149	149	0.535
15	15	0.0857
150	150	0.811
151	151	0.189
152	152	0.216
153	153	0.539
154	154	0.576
155	155	0.197
156	156	0.585
157	157	0.13
158	158	0.435
159	159	0.0905
16	16	0.376
160	160	0.575
161	161	0.3
162	162	0.871
163	163	0.243
164	164	0.13
165	165	0.151
166	166	0.95
167	167	0.91
168	168	0.173
169	169	0.0124
17	17	0.293
18	18	0.56
19	19	0.234
2	2	0.216
20	20	0.666
21	21	0.106
22	22	0.239
23	23	0.179
24	24	0.0385
25	25	0.272
26	26	0.143
27	27	0.154
28	28	0.496
29	29	0.362
3	3	0.0707
30	30	0.743
31	31	0.518
32	32	0.978
33	33	0.647
34	34	0.327
35	35	0.198
36	36	0.47
37	37	0.175
38	38	0.324
39	39	0.837
4	4	0.886
40	40	0.473
41	41	0.255
42	42	0.219
43	43	0.169
44	44	0.303
45	45	0.507
46	46	0.106
47	47	0.111
48	48	0.229
49	49	0.116
5	5	0.452
50	50	0.905
51	51	0.377
52	52	0.452
53	53	0.0781
54	54	0.264
55	55	0.138
56	56	0.253
57	57	0.538
58	58	0.0726
59	59	0.0538
6	6	0.644
60	60	0.0626
61	61	0.279
62	62	0.017
63	63	0.496
64	64	0.393
65	65	0.182
66	66	0.346
67	67	0.273
68	68	0.256
69	69	0.241
7	7	0.222
70	70	0.0492
71	71	0.115
72	72	0.301
73	73	0.205
74	74	0.768
75	75	0.0921
76	76	0.384
77	77	0.575
78	78	0.187
79	79	0.543
8	8	0.248
80	80	0.102
81	81	0.215
82	82	0.0189
83	83	0.411
84	84	0.128
85	85	0.146
86	86	0.0838
87	87	0.38
88	88	0.672
89	89	0.682
9	9	0.324
90	90	0.0245
91	91	0.41
92	92	0.0715
93	93	0.632
94	94	0.194
95	95	0.399
96	96	0.0519
97	97	0.643
98	98	0.0641
99	99	0.802

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11949

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008428!RNA-Seq@DRS012105
+|DRA_sample_Accession=RNA-Seq@SAMD00013680
-|accession_numbers=CAGE;DRX008536;DRR009408;DRZ000833;DRZ002218!RNA-Seq;DRX012358;DRR013806;DRZ003007;NA
+|accession_numbers=CAGE;DRX008536;DRR009408;DRZ000833;DRZ002218;DRZ012183;DRZ013568!RNA-Seq;DRX012358;DRR013806;DRZ003007;
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:131623044..131623089,-!p1@MBNL3!3.06!4521.61!MBNL3;;chr11:47400078..47400106,-!p1@SPI1!2.68!477.46!SPI1;;chr12:54694653..54694672,-!p2@NFE2!2.64!437.01!NFE2;;chrX:131623026..131623039,-!p5@MBNL3!2.62!419.56!MBNL3;;chr12:54694758..54694805,-!p1@NFE2!2.40!302.18!NFE2;;chr2:68592406..68592424,+!p1@PLEK!2.40!250.63!PLEK;;chrX:70315688..70315709,+!p1@FOXO4!2.34!486.19!FOXO4;;chr12:54694807..54694832,-!p3@NFE2!2.34!217.32!NFE2;;chr7:28220506..28220552,-!p3@JAZF1!2.34!216.52!JAZF1;;chr10:51585449..51585487,+!p6@NCOA4!2.33!213.35!NCOA4;;chrX:131622958..131622978,-!p3@MBNL3!2.32!259.35!MBNL3;;chrX:131622988..131623006,-!p8@MBNL3!2.32!208.59!MBNL3;;chr7:28220354..28220441,-!p1@JAZF1!2.25!2571.31!JAZF1;;chr10:51572339..51572376,+!p4@NCOA4!2.15!301.39!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.14!148.31!LYL1;;chr19:12998003..12998021,-!p1@KLF1!2.05!111.83!KLF1;;chr10:51572408..51572454,+!p3@NCOA4!2.00!550.43!NCOA4;;chr2:70142232..70142251,+!p1@MXD1!1.96!476.67!MXD1;;chr11:47400062..47400077,-!p2@SPI1!1.95!88.04!SPI1;;chr3:128212033..128212051,-!p1@GATA2!1.85!70.59!GATA2;;chr17:45810594..45810608,+!p1@TBX21!1.84!67.42!TBX21;;chr10:111985713..111985774,+!p2@MXI1!1.83!590.88!MXI1;;chr1:47697965..47697991,-!p7@TAL1!1.83!66.62!TAL1;;chr10:51585430..51585448,+!p7@NCOA4!1.81!63.45!NCOA4;;chr9:117150254..117150271,-!p1@AKNA!1.75!145.94!AKNA;;chr12:54778471..54778528,-!p1@ZNF385A!1.74!53.93!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!1.71!49.97!IRF8;;chr5:133451294..133451310,+!p2@TCF7!1.70!49.17!TCF7;;chr1:23857325..23857416,-!p2@E2F2!1.69!55.52!E2F2;;chr19:13213555..13213568,-!p5@LYL1!1.68!46.79!LYL1;;chr7:50344289..50344323,+!p1@IKZF1!1.68!46.79!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.66!45.21!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.66!44.42!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.63!42.04!PLEK;;chr19:13213662..13213686,-!p1@LYL1!1.60!57.11!LYL1;;chr3:27763807..27763822,-!p1@EOMES!1.60!38.86!EOMES;;chr2:148778973..148779035,+!p3@MBD5!1.58!92.80!MBD5;;chr1:25256756..25256774,-!p1@RUNX3!1.58!67.42!RUNX3;;chr1:43148855..43148908,+!p4@YBX1!1.56!54.73!YBX1;;chr20:50159198..50159299,-!p1@NFATC2!1.56!50.76!NFATC2;;chr5:176735063..176735088,-!p2@MXD3!1.55!34.10!MXD3;;chr10:111967345..111967422,+!p1@MXI1!1.53!511.57!MXI1;;chr11:47399996..47400014,-!p4@SPI1!1.53!32.52!SPI1;;chr12:10875831..10876025,-!p1@CSDA!1.52!2486.45!CSDA;;chr6:108881012..108881034,+!p3@FOXO3!1.52!112.62!FOXO3;;chr6:391743..391759,+!p1@IRF4!1.50!30.93!IRF4;;chr2:231090433..231090469,+!p1@SP140!1.50!30.93!SP140;;chrX:48644984..48645005,+!p1@GATA1!1.50!30.93!GATA1;;chr11:47399947..47399961,-!p3@SPI1!1.50!30.93!SPI1;;chr5:133450365..133450444,+!p1@TCF7!1.49!131.66!TCF7;;chr12:54689552..54689574,-!p6@NFE2!1.49!30.14!NFE2;;chr4:109087445..109087463,-!p1@LEF1!1.48!29.35!LEF1;;chr19:16435625..16435682,+!p1@KLF2!1.47!879.58!KLF2;;chr7:28725715..28725727,+!p3@CREB5!1.47!33.31!CREB5;;chr3:141748010..141748030,-!p8@TFDP2!1.47!28.55!TFDP2;;chrX:107018836..107018862,-!p8@TSC22D3!1.46!27.76!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!1.45!26.97!SPIB;;chr12:54689532..54689551,-!p4@NFE2!1.42!25.38!NFE2;;chr3:187463179..187463201,-!p2@BCL6!1.41!98.35!BCL6;;chr2:70167296..70167306,+!p3@MXD1!1.41!37.28!MXD1;;chr19:13213634..13213645,-!p8@LYL1!1.39!23.79!LYL1;;chr20:56195474..56195506,-!p1@ZBP1!1.38!23.00!ZBP1;;chr10:111985777..111985788,+!p4@MXI1!1.38!23.00!MXI1;;chr17:79881433..79881452,-!p6@MAFG!1.37!22.21!MAFG;;chrX:106960285..106960299,-!p1@TSC22D3!1.36!567.08!TSC22D3;;chr3:63953435..63953499,+!p1@ATXN7!1.35!21.41!ATXN7;;chr7:50344251..50344288,+!p3@IKZF1!1.35!21.41!IKZF1;;chr1:23857698..23857733,-!p1@E2F2!1.33!36.48!E2F2;;chr2:192015701..192015743,-!p1@STAT4!1.33!27.76!STAT4;;chr16:88752889..88752921,-!p1@SNAI3!1.33!23.79!SNAI3;;chr17:37934365..37934387,-!p2@IKZF3!1.33!20.62!IKZF3;;chr1:23857128..23857141,-!p6@E2F2!1.33!20.62!E2F2;;chr2:100759010..100759035,-!p1@AFF3!1.32!19.83!AFF3;;chr1:8484007..8484061,-!p13@RERE!1.31!24.59!RERE;;chr7:28725740..28725778,+!p1@CREB5!1.30!166.56!CREB5;;chr6:144385698..144385742,-!p2@PLAGL1!1.30!23.00!PLAGL1;;chr1:47697881..47697910,-!p4@TAL1!1.30!19.04!TAL1;;chrX:106960180..106960197,-!p2@TSC22D3!1.28!67.42!TSC22D3;;chr12:10875658..10875708,-!p2@CSDA!1.28!40.45!CSDA;;chr11:111249993..111250006,-!p1@POU2AF1!1.28!18.24!POU2AF1;;chr11:128563948..128564003,+!p1@FLI1!1.27!206.21!FLI1;;chr12:54691711..54691725,-!p7@NFE2!1.25!16.66!NFE2;;chr21:34442439..34442455,+!p1@OLIG1!1.25!16.66!OLIG1;;chr10:8096631..8096660,+!p1@GATA3!1.24!19.83!GATA3;;chr17:38497662..38497713,+!p4@RARA!1.24!19.04!RARA;;chr4:185395633..185395651,-!p2@IRF2!1.23!25.38!IRF2;;chr12:54694738..54694749,-!p5@NFE2!1.23!15.86!NFE2;;chr7:149470641..149470694,-!p1@ZNF467!1.22!69.80!ZNF467;;chr1:43148792..43148849,+!p2@YBX1!1.22!57.90!YBX1;;chr2:28618532..28618610,+!p4@FOSL2!1.21!26.17!FOSL2;;chr1:47695003..47695042,-!p2@TAL1!1.21!15.07!TAL1;;chr5:131826457..131826514,-!p1@IRF1!1.20!566.29!IRF1;;chr2:70142189..70142223,+!p2@MXD1!1.19!103.11!MXD1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.18!23.00!PCBP2;;chr2:192015750..192015793,-!p2@STAT4!1.18!19.04!STAT4;;chr20:56195525..56195556,-!p2@ZBP1!1.18!14.28!ZBP1;;chr9:135854091..135854159,+!p1@GFI1B!1.18!14.28!GFI1B;;chr12:10854646..10854658,-!p24@CSDA!1.18!14.28!CSDA;;chr10:51565239..51565263,+!p2@NCOA4!1.17!314.87!NCOA4;;chr2:208031943..208031978,-!p5@KLF7!1.17!18.24!KLF7;;chrX:107019163..107019179,-!p7@TSC22D3!1.17!15.86!TSC22D3;;chr11:47400045..47400060,-!p6@SPI1!1.16!13.48!SPI1;;chr17:38020516..38020544,-!p5@IKZF3!1.16!13.48!IKZF3;;chr9:32550965..32551031,-!p4@TOPORS!1.15!20.62!TOPORS;;chr4:185395191..185395226,-!p4@IRF2!1.15!18.24!IRF2;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.69!IKZF3;;chr9:137217986..137218049,+!p3@RXRA!1.13!35.69!RXRA;;chr7:128577972..128578047,+!p1@IRF5!1.13!19.83!IRF5;;chrX:107018969..107019024,-!p6@TSC22D3!1.13!17.45!TSC22D3;;chr6:91006518..91006570,-!p1@BACH2!1.11!27.76!BACH2;;chr3:71632840..71632857,-!p10@FOXP1!1.11!23.79!FOXP1;;chr1:221052776..221052799,+!p1@HLX!1.11!21.41!HLX;;chr2:113057501..113057529,+!p4@ZC3H6!1.11!11.90!ZC3H6;;chr4:57522598..57522664,-!p3@HOPX!1.11!11.90!HOPX;;chr12:54694686..54694697,-!p8@NFE2!1.11!11.90!NFE2;;chr5:133451347..133451358,+!p3@TCF7!1.11!11.90!TCF7;;chr7:115670804..115670825,-!p1@TFEC!1.11!11.90!TFEC;;chrX:131540410..131540438,-!p13@MBNL3!1.11!11.90!MBNL3;;chr1:164528297..164528309,+!p9@PBX1!1.10!15.07!PBX1;;chr10:31288398..31288455,-!p2@ZNF438!1.10!13.48!ZNF438;;chr7:149470540..149470596,-!p2@ZNF467!1.09!15.07!ZNF467;;chr16:3313791..3313834,+!p2@ZNF263!1.08!24.59!ZNF263;;chr12:10865870..10865888,-!p6@CSDA!1.08!15.07!CSDA;;chrX:131574281..131574293,-!p18@MBNL3!1.08!11.10!MBNL3;;chr6:108882109..108882173,+!p2@FOXO3!1.07!58.69!FOXO3;;chr6:106546808..106546833,+!p3@PRDM1!1.07!13.48!PRDM1;;chr2:60780607..60780624,-!p2@BCL11A!1.06!32.52!BCL11A;;chr17:40440481..40440550,+!p1@STAT5A!1.05!73.76!STAT5A;;chr13:41593425..41593480,-!p1@ELF1!1.05!65.83!ELF1;;chr19:56879534..56879615,+!p3@ZNF542!1.05!15.86!ZNF542;;chr11:16403910..16403933,-!p12@SOX6!1.05!10.31!SOX6;;chr7:137620650..137620677,-!p3@CREB3L2!1.05!10.31!CREB3L2;;chr7:50343895..50343936,+!p5@IKZF1!1.05!10.31!IKZF1;;chr2:100759037..100759058,-!p2@AFF3!1.05!10.31!AFF3;;chr2:231090471..231090504,+!p2@SP140!1.05!10.31!SP140;;chrX:131540376..131540407,-!p14@MBNL3!1.05!10.31!MBNL3;;chr17:38498594..38498661,+!p2@RARA!1.04!34.10!RARA;;chrX:106960221..106960236,-!p3@TSC22D3!1.03!26.97!TSC22D3;;chr16:89787937..89787971,+!p1@ZNF276!1.03!25.38!ZNF276;;chr17:37934204..37934241,-!p3@IKZF3!1.02!9.52!IKZF3;;chr11:16404108..16404124,-!p26@SOX6!1.02!9.52!SOX6;;chr1:26697243..26697258,-!p1@ZNF683!1.02!9.52!ZNF683;;chr21:36421535..36421610,-!p2@RUNX1!1.01!33.31!RUNX1;;chr8:67525443..67525459,-!p2@MYBL1!1.00!13.48!MYBL1;;chr12:10854595..10854628,-!p7@CSDA!1.00!12.69!CSDA;;chr3:71355163..71355209,-!p5@FOXP1!1.00!12.69!FOXP1;;chr6:108880956..108881011,+!p1@FOXO3!0.99!59.48!FOXO3;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.59!POU2F2;;chr2:70165338..70165355,+!p10@MXD1!0.99!8.72!MXD1;;chr17:38020557..38020572,-!p4@IKZF3!0.99!8.72!IKZF3;;chr4:106068026..106068084,+!p1@TET2!0.98!78.52!TET2;;chr15:60884706..60884743,-!p1@RORA!0.98!45.21!RORA;;chrX:70316005..70316034,+!p2@FOXO4!0.98!15.86!FOXO4;;chr11:128392273..128392308,-!p2@ETS1!0.97!36.48!ETS1;;chr2:208394817..208394834,+!p3@CREB1!0.97!34.90!CREB1;;chr6:108882364..108882391,+!p4@FOXO3!0.97!11.90!FOXO3;;chr2:113057415..113057477,+!p3@ZC3H6!0.97!11.10!ZC3H6;;chr4:185395590..185395627,-!p3@IRF2!0.97!10.31!IRF2;;chr11:130184753..130184824,-!p1@ZBTB44!0.96!114.21!ZBTB44;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.96!55.52!ZNF580;;chr6:15246200..15246214,+!p2@JARID2!0.96!23.00!JARID2;;chr9:117150303..117150312,-!p3@AKNA!0.96!10.31!AKNA;;chr3:18486354..18486377,-!p2@SATB1!0.96!10.31!SATB1;;chr17:38498402..38498445,+!p3@RARA!0.95!29.35!RARA;;chr19:19779619..19779670,+!p1@ZNF101!0.95!23.00!ZNF101;;chr7:64126535..64126559,+!p2@ZNF107!0.95!17.45!ZNF107;;chr17:56565257..56565283,-!p2@HSF5!0.95!7.93!HSF5;;chr2:231090344..231090361,-!p3@SP110!0.95!7.93!SP110;;chr2:60781201..60781258,-!p3@BCL11A!0.95!7.93!BCL11A;;chr2:66666432..66666462,+!p7@MEIS1!0.95!7.93!MEIS1;;chr1:47691303..47691319,-!p5@TAL1!0.95!7.93!TAL1;;chr1:92951607..92951661,-!p1@GFI1!0.95!7.93!GFI1;;chr21:34442540..34442560,+!p2@OLIG1!0.95!7.93!OLIG1;;chr5:142782823..142782854,-!p3@NR3C1!0.94!11.10!NR3C1;;chr4:140098339..140098392,-!p1@ELF2!0.93!64.24!ELF2;;chr16:29817231..29817290,+!p10@MAZ!0.92!22.21!MAZ;;chr9:88969339..88969422,-!p2@ZCCHC6!0.91!57.90!ZCCHC6;;chr1:156470515..156470542,-!p2@MEF2D!0.91!38.86!MEF2D;;chr1:23857087..23857100,-!p8@E2F2!0.91!7.14!E2F2;;chr2:70166128..70166141,+!p9@MXD1!0.91!7.14!MXD1;;chr2:70166499..70166536,+!p6@MXD1!0.91!7.14!MXD1;;chr4:109090075..109090095,-!p2@LEF1!0.91!7.14!LEF1;;chr12:54778351..54778378,-!p6@ZNF385A!0.91!7.14!ZNF385A;;chr17:17721569..17721574,-!p9@SREBF1!0.91!7.14!SREBF1;;chr7:50348268..50348366,+!p4@IKZF1!0.91!7.14!IKZF1;;chr8:71316021..71316068,-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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation3.CNhs11949.12184-129A6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation3.CNhs11949.12184-129A6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation3.CNhs11949.12184-129A6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation3.CNhs11949.12184-129A6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation3.CNhs11949.12184-129A6.hg38.nobarcode.ctss.bed.gz
 |id=FF:12184-129A6
 |is_a=EFO:0002091;;FF:0000002;;FF:0000281
 |is_obsolete=
 |library_id=CNhs11949!RDhi10005
-|library_id_phase_based=1:CNhs11949
+|library_id_phase_based=2:CNhs11949
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12184
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12184
 |name=Whole blood (ribopure), donor090612, donation3
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11949,LSID836,release011,COMPLETED
-|profile_rnaseq=RDhi10005,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12184-129A6;search_select_hide=table117:FF:12184-129A6
 }}

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FF:12184-129A6: Difference between revisions

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Latest revision as of 18:33, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0