FF:12837-137B2: Difference between revisions

Latest revision as of 18:46, 4 June 2020

Name:	Melanocyte, donor3 (MC+3)
Species:	Human (Homo sapiens)
Library ID:	CNhs13406
Sample type:	time courses
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	male
age	NA
cell type	melanocyte
cell line	NA
company	NA
collaboration	Susan Zabierowski (Wistar Institute)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005700

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13406		CAGE		DRX008596		DRR009468

Accession ID Hg19

Library id		BAM		CTSS
CNhs13406		DRZ000893		DRZ002278

Accession ID Hg38

Library id		BAM		CTSS
CNhs13406		DRZ012243		DRZ013628

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0953
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0022
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0238
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.038
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0.109
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.241
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.044
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0735
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.375
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.809
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.422
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0814
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.269
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0.947
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0315
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0.646
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13406

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.286
MA0003.1	MA0003.1	0.982
MA0004.1	MA0004.1	2.63064e-4
MA0006.1	MA0006.1	0.0632
MA0007.1	MA0007.1	0.85
MA0009.1	MA0009.1	0.522
MA0014.1	MA0014.1	0.203
MA0017.1	MA0017.1	0.764
MA0018.2	MA0018.2	0.77
MA0019.1	MA0019.1	0.557
MA0024.1	MA0024.1	0.611
MA0025.1	MA0025.1	0.0316
MA0027.1	MA0027.1	0.831
MA0028.1	MA0028.1	0.0359
MA0029.1	MA0029.1	0.435
MA0030.1	MA0030.1	0.576
MA0031.1	MA0031.1	0.879
MA0035.2	MA0035.2	0.75
MA0038.1	MA0038.1	0.284
MA0039.2	MA0039.2	0.241
MA0040.1	MA0040.1	0.661
MA0041.1	MA0041.1	0.346
MA0042.1	MA0042.1	0.889
MA0043.1	MA0043.1	0.00945
MA0046.1	MA0046.1	0.114
MA0047.2	MA0047.2	0.977
MA0048.1	MA0048.1	0.851
MA0050.1	MA0050.1	0.118
MA0051.1	MA0051.1	0.0604
MA0052.1	MA0052.1	0.00423
MA0055.1	MA0055.1	0.0424
MA0057.1	MA0057.1	0.596
MA0058.1	MA0058.1	4.08324e-8
MA0059.1	MA0059.1	3.95848e-4
MA0060.1	MA0060.1	0.137
MA0061.1	MA0061.1	3.36011e-5
MA0062.2	MA0062.2	0.0867
MA0065.2	MA0065.2	0.299
MA0066.1	MA0066.1	0.247
MA0067.1	MA0067.1	0.002
MA0068.1	MA0068.1	0.325
MA0069.1	MA0069.1	0.412
MA0070.1	MA0070.1	0.0634
MA0071.1	MA0071.1	0.91
MA0072.1	MA0072.1	0.306
MA0073.1	MA0073.1	0.612
MA0074.1	MA0074.1	0.201
MA0076.1	MA0076.1	0.177
MA0077.1	MA0077.1	0.59
MA0078.1	MA0078.1	0.681
MA0079.2	MA0079.2	0.282
MA0080.2	MA0080.2	7.21611e-6
MA0081.1	MA0081.1	0.729
MA0083.1	MA0083.1	0.00131
MA0084.1	MA0084.1	0.66
MA0087.1	MA0087.1	0.244
MA0088.1	MA0088.1	0.0338
MA0090.1	MA0090.1	0.174
MA0091.1	MA0091.1	0.858
MA0092.1	MA0092.1	0.326
MA0093.1	MA0093.1	1.51823e-4
MA0099.2	MA0099.2	9.56993e-11
MA0100.1	MA0100.1	0.407
MA0101.1	MA0101.1	0.0183
MA0102.2	MA0102.2	8.31097e-4
MA0103.1	MA0103.1	0.0143
MA0104.2	MA0104.2	2.02017e-5
MA0105.1	MA0105.1	0.0046
MA0106.1	MA0106.1	0.0747
MA0107.1	MA0107.1	9.64016e-4
MA0108.2	MA0108.2	2.34247e-11
MA0111.1	MA0111.1	0.71
MA0112.2	MA0112.2	0.0843
MA0113.1	MA0113.1	0.462
MA0114.1	MA0114.1	0.293
MA0115.1	MA0115.1	0.864
MA0116.1	MA0116.1	0.031
MA0117.1	MA0117.1	0.00962
MA0119.1	MA0119.1	0.734
MA0122.1	MA0122.1	0.905
MA0124.1	MA0124.1	0.156
MA0125.1	MA0125.1	0.0197
MA0131.1	MA0131.1	0.928
MA0135.1	MA0135.1	0.313
MA0136.1	MA0136.1	1.15986e-4
MA0137.2	MA0137.2	0.535
MA0138.2	MA0138.2	0.725
MA0139.1	MA0139.1	0.811
MA0140.1	MA0140.1	0.989
MA0141.1	MA0141.1	0.0667
MA0142.1	MA0142.1	0.686
MA0143.1	MA0143.1	0.156
MA0144.1	MA0144.1	0.278
MA0145.1	MA0145.1	0.375
MA0146.1	MA0146.1	0.193
MA0147.1	MA0147.1	9.37881e-4
MA0148.1	MA0148.1	0.983
MA0149.1	MA0149.1	0.197
MA0150.1	MA0150.1	0.00386
MA0152.1	MA0152.1	0.883
MA0153.1	MA0153.1	0.722
MA0154.1	MA0154.1	0.163
MA0155.1	MA0155.1	0.563
MA0156.1	MA0156.1	0.00481
MA0157.1	MA0157.1	0.788
MA0159.1	MA0159.1	0.159
MA0160.1	MA0160.1	0.645
MA0162.1	MA0162.1	0.291
MA0163.1	MA0163.1	0.937
MA0164.1	MA0164.1	0.542
MA0258.1	MA0258.1	0.856
MA0259.1	MA0259.1	0.0643

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13406

Novel motif	Logo	P-value
1	1	0.936
10	10	0.654
100	100	0.471
101	101	0.757
102	102	0.193
103	103	0.0264
104	104	0.968
105	105	0.0719
106	106	0.00266
107	107	0.00535
108	108	0.741
109	109	0.969
11	11	0.452
110	110	0.103
111	111	0.878
112	112	0.615
113	113	0.0186
114	114	0.263
115	115	0.634
116	116	0.0236
117	117	0.496
118	118	0.343
119	119	0.256
12	12	0.398
120	120	0.439
121	121	0.1
122	122	0.724
123	123	0.346
124	124	0.69
125	125	0.137
126	126	0.442
127	127	0.907
128	128	0.684
129	129	0.254
13	13	0.459
130	130	0.831
131	131	0.426
132	132	0.258
133	133	0.792
134	134	0.632
135	135	0.563
136	136	0.0269
137	137	0.678
138	138	0.428
139	139	0.0466
14	14	0.826
140	140	0.44
141	141	0.705
142	142	0.112
143	143	0.455
144	144	0.509
145	145	0.851
146	146	0.344
147	147	0.629
148	148	0.316
149	149	0.239
15	15	0.746
150	150	0.396
151	151	0.992
152	152	0.271
153	153	0.641
154	154	0.119
155	155	0.821
156	156	0.899
157	157	0.394
158	158	0.142
159	159	0.264
16	16	0.684
160	160	0.743
161	161	0.679
162	162	0.137
163	163	0.746
164	164	0.759
165	165	0.305
166	166	0.244
167	167	0.431
168	168	0.841
169	169	0.252
17	17	0.492
18	18	0.505
19	19	0.674
2	2	0.0419
20	20	0.21
21	21	0.441
22	22	0.529
23	23	0.0846
24	24	0.551
25	25	0.531
26	26	0.433
27	27	0.667
28	28	0.849
29	29	0.116
3	3	0.89
30	30	0.186
31	31	0.292
32	32	0.00567
33	33	0.585
34	34	0.605
35	35	0.52
36	36	0.837
37	37	0.297
38	38	0.864
39	39	0.775
4	4	0.159
40	40	0.233
41	41	0.502
42	42	0.265
43	43	0.316
44	44	0.246
45	45	0.232
46	46	0.918
47	47	0.575
48	48	0.464
49	49	0.273
5	5	0.592
50	50	0.867
51	51	0.988
52	52	0.246
53	53	0.31
54	54	0.898
55	55	0.22
56	56	0.748
57	57	0.121
58	58	0.0589
59	59	0.481
6	6	0.0855
60	60	0.16
61	61	0.663
62	62	0.00317
63	63	0.633
64	64	0.822
65	65	0.901
66	66	0.171
67	67	0.454
68	68	0.0189
69	69	0.991
7	7	0.765
70	70	0.861
71	71	0.514
72	72	0.67
73	73	0.558
74	74	0.867
75	75	0.85
76	76	0.304
77	77	0.371
78	78	0.327
79	79	0.768
8	8	0.878
80	80	0.647
81	81	0.526
82	82	0.86
83	83	0.558
84	84	0.828
85	85	0.934
86	86	0.849
87	87	0.0269
88	88	0.581
89	89	0.826
9	9	0.302
90	90	0.385
91	91	0.754
92	92	0.025
93	93	0.157
94	94	0.896
95	95	0.343
96	96	0.614
97	97	0.625
98	98	0.111
99	99	0.45

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13406

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000150 glandular epithelial cell
EFO:0002091 biological replicate
FF:0000730 human melanocyte (MC) sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000150 (glandular epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000730 (human melanocyte (MC) sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005700
+|accession_numbers=CAGE;DRX008596;DRR009468;DRZ000893;DRZ002278;DRZ012243;DRZ013628
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000150,CL:0000255,CL:0002077,CL:0000148
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr22:38380543..38380569,-!p1@SOX10!2.72!521.35!SOX10;;chr3:69985734..69985749,+!p2@MITF!2.60!399.87!MITF;;chr6:10412600..10412637,-!p1@TFAP2A!2.28!305.83!TFAP2A;;chr2:223163706..223163730,-!p1@PAX3!2.27!183.79!PAX3;;chr6:391743..391759,+!p1@IRF4!2.21!161.21!IRF4;;chr6:10415276..10415341,-!p2@TFAP2A!2.15!170.35!TFAP2A;;chr15:42749722..42749739,-!p2@ZFP106!2.10!216.08!ZFP106;;chr6:10415484..10415508,-!p3@TFAP2A!2.04!108.61!TFAP2A;;chr2:239148671..239148686,-!p1@HES6!1.72!179.21!HES6;;chr11:125034640..125034655,+!p1@PKNOX2!1.62!41.16!PKNOX2;;chr19:3574330..3574393,+!p2@HMG20B!1.62!40.87!HMG20B;;chr16:67198683..67198698,+!p2@HSF4!1.60!38.87!HSF4;;chr3:69985792..69985803,+!p7@MITF!1.59!38.30!MITF;;chr6:10412576..10412599,-!p5@TFAP2A!1.58!36.59!TFAP2A;;chr10:111987079..111987115,+!p3@MXI1!1.56!47.45!MXI1;;chr20:50179368..50179392,-!p2@NFATC2!1.50!38.87!NFATC2;;chr19:3574157..3574180,+!p4@HMG20B!1.50!30.30!HMG20B;;chr16:67198633..67198671,+!p1@HSF4!1.43!26.01!HSF4;;chr17:59477233..59477263,+!p1@TBX2!1.39!71.46!TBX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.34!23.72!TFAP2A;;chr8:72756637..72756664,-!p3@MSC!1.32!22.58!MSC;;chr12:26277817..26277863,-!p2@BHLHE41!1.27!23.72!BHLHE41;;chr2:145277882..145277967,-!p3@ZEB2!1.26!29.44!ZEB2;;chr6:10415263..10415274,-!p8@TFAP2A!1.26!17.15!TFAP2A;;chr9:102584262..102584276,+!p1@NR4A3!1.25!37.44!NR4A3;;chr1:158985493..158985535,+!p4@IFI16!1.24!24.58!IFI16;;chr19:3574400..3574430,+!p6@HMG20B!1.24!16.58!HMG20B;;chr12:54393880..54393962,+!p1@HOXC9!1.22!15.72!HOXC9;;chr8:49833978..49833996,-!p1@SNAI2!1.19!295.83!SNAI2;;chr1:63788229..63788250,+!p1@FOXD3!1.19!14.58!FOXD3;;chr5:321810..321877,+!p1@AHRR!1.18!44.59!AHRR;;chr2:145277640..145277771,-!p1@ZEB2!1.16!180.07!ZEB2;;chr17:46688334..46688385,-!p1@HOXB7!1.15!19.15!HOXB7;;chr11:706938..707008,-!p3@DEAF1!1.15!16.58!DEAF1;;chr15:57511609..57511651,+!p2@TCF12!1.11!20.01!TCF12;;chr17:59477275..59477286,+!p3@TBX2!1.11!15.72!TBX2;;chr11:125034605..125034636,+!p2@PKNOX2!1.11!12.00!PKNOX2;;chr17:46806067..46806097,-!p1@HOXB13!1.10!11.72!HOXB13;;chr1:25256756..25256774,-!p1@RUNX3!1.09!21.15!RUNX3;;chr8:49833948..49833973,-!p2@SNAI2!1.06!68.03!SNAI2;;chr12:26277956..26277980,-!p1@BHLHE41!1.06!38.01!BHLHE41;;chr8:72756267..72756296,-!p4@MSC!1.04!14.58!MSC;;chr13:41635759..41635774,-!p21@ELF1!1.04!10.00!ELF1;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.72!KDM5D;;chr19:57946684..57946723,+!p1@ZNF749!1.02!106.61!ZNF749;;chr1:158969752..158969780,+!p6@IFI16!1.02!16.58!IFI16;;chr1:158979686..158979745,+!p1@IFI16!1.01!310.41!IFI16;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.01!9.15!HOXC5;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.15!ALX1;;chr8:128748308..128748324,+!p2@MYC!1.00!256.10!MYC;;chr3:185826855..185826911,-!p1@ETV5!0.99!245.81!ETV5;;chr3:178789522..178789564,-!p2@ZMAT3!0.98!64.88!ZMAT3;;chr2:96012397..96012417,+!p3@KCNIP3!0.98!8.57!KCNIP3;;chr17:59477197..59477212,+!p2@TBX2!0.97!14.58!TBX2;;chr4:109089095..109089144,-!p6@LEF1!0.97!8.29!LEF1;;chr1:165414325..165414369,-!p1@RXRG!0.97!8.29!RXRG;;chr14:75988771..75988826,+!p1@BATF!0.96!10.86!BATF;;chr8:72756667..72756736,-!p2@MSC!0.94!12.29!MSC;;chr6:10412477..10412490,-!p10@TFAP2A!0.94!7.72!TFAP2A;;chr12:26277929..26277955,-!p3@BHLHE41!0.93!10.86!BHLHE41;;chr16:29819122..29819141,+!p34@MAZ!0.93!7.43!MAZ;;chr7:44143925..44143970,+!p1@AEBP1!0.90!164.35!AEBP1;;chr16:54964740..54964789,+!p1@IRX5!0.90!10.29!IRX5;;chr20:50179584..50179611,-!p6@NFATC2!0.90!6.86!NFATC2;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.86!ZFY;;chr11:128392273..128392308,-!p2@ETS1!0.89!30.30!ETS1;;chr8:72756063..72756125,-!p1@MSC!0.89!14.01!MSC;;chr9:2158443..2158481,+!p2@SMARCA2!0.88!19.72!SMARCA2;;chr9:16728327..16728338,-!p5@BNC2!0.88!6.57!BNC2;;chr6:10412262..10412271,-!p21@TFAP2A!0.86!6.29!TFAP2A;;chr12:24103844..24103880,-!p3@SOX5!0.86!6.29!SOX5;;chr2:176994408..176994492,+!p1@HOXD8!0.86!6.29!HOXD8;;chr4:109088940..109089037,-!p4@LEF1!0.85!6.00!LEF1;;chr2:96012353..96012378,+!p4@KCNIP3!0.83!5.72!KCNIP3;;chrX:106965183..106965214,-!p13@TSC22D3!0.83!5.72!TSC22D3;;chr12:54380404..54380433,+!p3@HOXC10!0.83!5.72!HOXC10;;chr8:72756213..72756243,-!p5@MSC!0.82!7.43!MSC;;chr5:124082322..124082364,-!p1@ZNF608!0.81!14.86!ZNF608;;chr12:54378923..54378966,+!p1@HOXC10!0.81!5.43!HOXC10;;chr12:54379477..54379498,+!p5@HOXC5!0.81!5.43!HOXC5;;chr12:85673868..85673881,+!p2@ALX1!0.81!5.43!ALX1;;chr17:46682321..46682362,-!p1@HOXB6!0.81!5.43!HOXB6;;chr3:69788576..69788648,+!p1@MITF!0.80!30.58!MITF;;chr16:79634624..79634642,-!p1@MAF!0.80!22.58!MAF;;chr9:102584241..102584261,+!p4@NR4A3!0.80!8.57!NR4A3;;chr12:24715376..24715432,-!p1@SOX5!0.80!6.86!SOX5;;chr8:102217679..102217719,-!p2@ZNF706!0.79!19.15!ZNF706;;chr17:46806035..46806059,-!p2@HOXB13!0.79!5.14!HOXB13;;chr17:40440481..40440550,+!p1@STAT5A!0.78!39.73!STAT5A;;chr19:3572758..3572795,+!p7@HMG20B!0.77!4.86!HMG20B;;chr2:145275982..145276003,-!p7@ZEB2!0.77!4.86!ZEB2;;chr12:85674018..85674039,+!p3@ALX1!0.77!4.86!ALX1;;chr20:55204351..55204377,+!p1@TFAP2C!0.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077
 |ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=FF:0000343,FF:0000730,FF:12837-137B2
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Melanocyte%252c%2520donor3%2520%2528MC%252b3%2529.CNhs13406.12837-137B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:12837-137B2
 |is_a=CL:0000150;;EFO:0002091;;FF:0000730
 |is_obsolete=
+|library_id=CNhs13406
+|library_id_phase_based=2:CNhs13406
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12837
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12837
 |name=Melanocyte, donor3 (MC+3)
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13406,LSID1023,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=137
 |rna_catalog_number=
@@ Line 59: / Line 77: @@
 |rna_sample_type=
 |rna_tube_id=137B2
-|rna_weight_ug=7.00
+|rna_weight_ug=7
 |sample_age=
+|sample_category=time courses
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 99: @@
 |sample_strain=
 |sample_tissue=skin
+|timecourse=Melanocytic_differentiation
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12837-137B2;search_select_hide=table117:FF:12837-137B2
 }}

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FF:12837-137B2: Difference between revisions

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Latest revision as of 18:46, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0