FFCP PHASE1:Hg19::chr20:42545365..42545378,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:42545365..42545378,-
|short_description=p@chr20:42545365..42545378,-
|description=CAGE_peak_at_chr20:42545365..42545378,-
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr20:42545365..42545378,- | |||
|description=CAGE_peak_at_chr20:42545365..42545378,- | |||
|id=chr20:42545365..42545378,- | |||
|ontology_enrichment_celltype=CL:0002367!3.24e-07!2;CL:0000057!7.77e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002363;1.51e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002363,2.02e-09,2;CL:0000008,2.02e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000008;1.51e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;9.48e-18;1!DOID:0060061;9.48e-18;1!DOID:8691;9.48e-18;1!DOID:4929;1.51e-09;2!DOID:171;1.09e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,8.72e-18,1;DOID:0060061,8.72e-18,1;DOID:8691,8.72e-18,1;DOID:4929,1.33e-09,2;DOID:171,1.13e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0003351!2.22e-08!6;UBERON:0002370!7.53e-08!4;UBERON:0005058!7.53e-08!4;UBERON:0009113!7.53e-08!4;UBERON:0003295!7.53e-08!4;UBERON:0005562!7.53e-08!4;UBERON:0001042!2.00e-07!10;UBERON:0009145!2.00e-07!10;UBERON:0005969!3.24e-07!2;UBERON:0003956!3.24e-07!2;UBERON:0004177!4.06e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.07e-34;2!UBERON:0005058;5.07e-34;2!UBERON:0009113;5.07e-34;2!UBERON:0002346;8.03e-18;4!UBERON:0000923;8.03e-18;4!UBERON:0010316;8.03e-18;4!UBERON:0005291;8.03e-18;4!UBERON:0002331;2.07e-15;10!UBERON:0002050;1.84e-14;5!UBERON:0005423;1.84e-14;5!UBERON:0004177;2.94e-14;5!UBERON:0005057;2.94e-14;5!UBERON:0000922;1.57e-11;49!UBERON:0002390;1.88e-11;32!UBERON:0000178;1.73e-10;15!UBERON:0000179;1.73e-10;15!UBERON:0000463;1.73e-10;15!UBERON:0003566;1.51e-09;2!UBERON:0001777;1.51e-09;2!UBERON:0001264;1.62e-07;10!UBERON:0000478;9.22e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.45e-17,4;UBERON:0005058,1.45e-17,4;UBERON:0009113,1.45e-17,4;UBERON:0003295,1.45e-17,4;UBERON:0005562,1.45e-17,4;UBERON:0002331,1.74e-15,10;UBERON:0000358,1.74e-15,10;UBERON:0000307,1.74e-15,10;UBERON:0000091,1.74e-15,10;UBERON:0000087,1.74e-15,10;UBERON:0007010,1.74e-15,10;UBERON:0007806,1.74e-15,10;UBERON:0008780,1.74e-15,10;UBERON:0005728,1.74e-15,10;UBERON:0003351,4.81e-12,6;UBERON:0000178,1.55e-10,15;UBERON:0000179,1.55e-10,15;UBERON:0000463,1.55e-10,15;UBERON:0004177,1.85e-10,7;UBERON:0005057,1.85e-10,7;UBERON:0003566,2.02e-09,2;UBERON:0001777,2.02e-09,2;UBERON:0000974,1.37e-07,10;UBERON:0003408,1.37e-07,10;UBERON:0001042,1.37e-07,10;UBERON:0009145,1.37e-07,10;UBERON:0001264,1.62e-07,10;UBERON:0006562,5.64e-07,11;UBERON:0009722,5.64e-07,11;UBERON:0007690,5.64e-07,11;UBERON:0000478,8.59e-07,24 | |||
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| ||
|short_description=p@chr20:42545365..42545378,- | |||
}} | }} |
Latest revision as of 14:09, 28 July 2015
Short description: | p@chr20:42545365..42545378, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:42545365..42545378, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratocyte | 2.02e-09 | 2 |
migratory cranial neural crest cell | 2.02e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.45e-17 | 4 |
hemolymphoid system gland | 1.45e-17 | 4 |
thymic region | 1.45e-17 | 4 |
pharyngeal gland | 1.45e-17 | 4 |
thymus primordium | 1.45e-17 | 4 |
umbilical cord | 1.74e-15 | 10 |
blastocyst | 1.74e-15 | 10 |
blastula | 1.74e-15 | 10 |
bilaminar disc | 1.74e-15 | 10 |
inner cell mass | 1.74e-15 | 10 |
cleaving embryo | 1.74e-15 | 10 |
connecting stalk | 1.74e-15 | 10 |
inner cell mass derived epiblast | 1.74e-15 | 10 |
extraembryonic mesoderm | 1.74e-15 | 10 |
pharyngeal epithelium | 4.81e-12 | 6 |
blood | 1.55e-10 | 15 |
haemolymphatic fluid | 1.55e-10 | 15 |
organism substance | 1.55e-10 | 15 |
hemopoietic organ | 1.85e-10 | 7 |
immune organ | 1.85e-10 | 7 |
head connective tissue | 2.02e-09 | 2 |
substantia propria of cornea | 2.02e-09 | 2 |
neck | 1.37e-07 | 10 |
gland of gut | 1.37e-07 | 10 |
chordate pharynx | 1.37e-07 | 10 |
pharyngeal region of foregut | 1.37e-07 | 10 |
pancreas | 1.62e-07 | 10 |
pharynx | 5.64e-07 | 11 |
entire pharyngeal arch endoderm | 5.64e-07 | 11 |
early pharyngeal endoderm | 5.64e-07 | 11 |
extraembryonic structure | 8.59e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 8.72e-18 | 1 |
cutaneous T cell lymphoma | 8.72e-18 | 1 |
mycosis fungoides | 8.72e-18 | 1 |
tubular adenocarcinoma | 1.33e-09 | 2 |
neuroectodermal tumor | 1.13e-07 | 10 |