Personal tools

Coexpression cluster:C4610: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|full_id=C4610_amniotic_immature_cervical_chorionic_Gingival_nasal_epidermoid
|full_id=C4610_amniotic_immature_cervical_chorionic_Gingival_nasal_epidermoid
|id=C4610
|id=C4610
|ontology_enrichment_celltype=CL:0000066!2.31e-21!254;CL:0002076!1.39e-18!43;CL:0000223!1.54e-13!59;CL:0002368!1.25e-09!13;CL:0002251!3.46e-09!21;CL:0000076!2.34e-08!62;CL:0000220!9.61e-08!246;CL:0002321!1.73e-07!248
|ontology_enrichment_celltype=CL:0000066!2.21e-22!253;CL:0002076!1.21e-19!42;CL:0000223!7.66e-15!58;CL:0002251!7.27e-11!20;CL:0000349!1.37e-08!19;CL:0002368!1.70e-08!13
|ontology_enrichment_disease=DOID:2394!1.55e-10!14;DOID:193!3.74e-09!29;DOID:1749!4.67e-09!14;DOID:120!2.08e-08!27;DOID:305!3.68e-08!106
|ontology_enrichment_disease=DOID:2394!5.62e-12!14;DOID:1749!2.15e-10!14;DOID:305!3.99e-10!106;DOID:193!3.66e-09!29;DOID:120!5.13e-09!27;DOID:162!4.74e-07!235;DOID:14566!5.27e-07!239;DOID:0050687!9.11e-07!143
|ontology_enrichment_uberon=UBERON:0003100!4.08e-14!41;UBERON:0004119!1.01e-13!169;UBERON:0000925!1.01e-13!169;UBERON:0006595!1.01e-13!169;UBERON:0005156!2.75e-13!59;UBERON:0000990!2.75e-13!59;UBERON:0003134!1.53e-12!37;UBERON:0000474!1.53e-12!37;UBERON:0005631!6.16e-11!14;UBERON:0000158!6.16e-11!14;UBERON:0003133!2.96e-10!48;UBERON:0000161!3.84e-09!35;UBERON:0001007!4.41e-09!155;UBERON:0001555!4.41e-09!155;UBERON:0007026!4.41e-09!155;UBERON:0000077!9.19e-09!130;UBERON:0004921!1.83e-08!129;UBERON:0004185!1.83e-08!129;UBERON:0005911!2.14e-08!82;UBERON:0001004!8.44e-08!72;UBERON:0000992!9.57e-08!13;UBERON:0003124!1.46e-07!7;UBERON:0000466!5.42e-07!126;UBERON:0000464!5.62e-07!104;UBERON:0005153!8.18e-07!37;UBERON:0000065!9.95e-07!53
|ontology_enrichment_uberon=UBERON:0005631!3.97e-13!14;UBERON:0000158!3.97e-13!14;UBERON:0004119!9.39e-13!160;UBERON:0000925!9.39e-13!160;UBERON:0006595!9.39e-13!160;UBERON:0005156!3.57e-11!59;UBERON:0000990!3.57e-11!59;UBERON:0003100!5.95e-11!41;UBERON:0003134!1.04e-10!37;UBERON:0000474!1.04e-10!37;UBERON:0003124!5.16e-10!7;UBERON:0000161!1.06e-08!36;UBERON:0003133!2.33e-08!48;UBERON:0006554!3.29e-08!47;UBERON:0004923!5.16e-08!66;UBERON:0001007!6.52e-08!145;UBERON:0001555!6.52e-08!145;UBERON:0007026!6.52e-08!145;UBERON:0001008!6.62e-08!48;UBERON:0005911!9.61e-08!82;UBERON:0000992!1.85e-07!13;UBERON:0000478!2.66e-07!24;UBERON:0000344!3.35e-07!20
|tf_chipseq_enrich=CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0115741619999597!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0168312099869916!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00901468156166106!GTF2F1#2962;3:12.7396608767577:0.000483552504743859:0.0043584827861348!JUN#3725;3:12.5128291923363:0.000510331399272625:0.00446236612597402!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0157604882976035!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0295880034301407!NR3C1#2908;3:14.973023331173:0.000297833119467548:0.0031006173409162!STAT3#6774;3:10.5194649971542:0.000858918453041531:0.0064531029650532!TRIM28#10155;3:18.5905250452625:0.000155596929725528:0.00198006430408241!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0191071744415303!USF2#7392;3:12.9921973850696:0.000455897939342781:0.00422893017914741
|tf_chipseq_enrich=CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0115741619999597!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0168312099869916!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00901468156166106!GTF2F1#2962;3:12.7396608767577:0.000483552504743859:0.0043584827861348!JUN#3725;3:12.5128291923363:0.000510331399272625:0.00446236612597402!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0157604882976035!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0295880034301407!NR3C1#2908;3:14.973023331173:0.000297833119467548:0.0031006173409162!STAT3#6774;3:10.5194649971542:0.000858918453041531:0.0064531029650532!TRIM28#10155;3:18.5905250452625:0.000155596929725528:0.00198006430408241!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0191071744415303!USF2#7392;3:12.9921973850696:0.000455897939342781:0.00422893017914741
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,1.40581e-07,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.0190579,0.125978,0.0116452,0.0619003,0.010441,0.0982016,0.0528514,0.00606063,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.00181435,0.0907212,0.143747,0.0933697,0.204953,0.00676561,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.0102981,0.184019,0.120917,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.0709764,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.00481292,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.0422457,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.00862108,0.144217,0.269326,0.182599,0.0339971,0.0117862,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.001669,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.00365114,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.0283286,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,4.47691e-05,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.00782633,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.0142864,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.00183069,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.00500828,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.000300991,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.782949,0.635872,0.563047,0.823736,0.807281,0.335423,0.261644,0.261553,0.446302,0.373681,0.309233,0.00510271,0.330703,0.395854,0.000775053,0.178727,0.615744,0.00420832,0.292154,0.405773,0.39729,0.0582602,0.597171,0.187251,0.362792,0.181715,0.423979,0.000241662,0.330894,0.218329,0.427027,0.376924,0.129235,0.647576,0.173877,0.168255,0.0792797,0.415647,0.484505,0.253571,0.276829,0.0509673,0.481778,0.316882,0.223503,0.155672,0.603208,0.283727,0.314747,0.577664,0.291709,0.448095,0.576651,0.416816,0.292835,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.706298,0.821217,0.747852,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.625945,0.0340542,0.163222,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.0012205,0.596648,0.762864,0.0583074,0.1002,0.671377,0.546839,0.551561,0.448039,0.218623,0.312808,0.695172,0.0451077,0.00286634,0.229003,0.650179,0.589326,0.50215,0.0484563,0.34331,0.477304,0.289204,0.327108,0.683186,0.278044,0.807485,0.428671,0.228096,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.516462,0.858756,0.335105,0.144809,0.0111455,0.08628,0.376191,0.447325,0.459928,0.0348837,0.152681,0.0465712,0.137098,0.259235,0.134788,0.00502762,0.546222,0.293698,0.284593,0.343734,0.00622965,0.305777,0.601433,0.503082,0.522888,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.753577,0.0228979,0.525396,0.651524,0.437176,0.269226,0.339277,0.0479524,0.281425,0.141758,0.00351186,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.00966846,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.000255104,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.390395,0.0464827,4.88196e-08,0.00683084,0.104559,0.0899537,0.0866966,0.000772956,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.000101224,0.0666953,0.182185,0.00643465,0.219383,0.062811,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.000384304,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.00594521,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.013859,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.000553033,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,7.60655e-05,0.0936516,0.144075,0.0340203,0.0741807,0.00447267,0.739716,0.655293,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.911304,0.936279,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.0122477,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.0128248,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.000720136,0.311847,0.0062542,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.43956,0.0789454,0.42622,0.448797,0.197484,0.0919774,0.36145,0.406019,0.381071,0.580441,0.643768,0.0198622,0.722159,0.390366,0.48809,0.50058,0.443185,0.169835,0.875915,0.871256,0.227104,0.518585,0.617852,0.38649,0.284625,0.504757,0.55194,0.729153,0.28907,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.777351,0.390974,0.73485,0.683217,0.161598,0.751174,0.644754,0.496032,0.799185,0.37357,0.78509,0.477353,0.78384,0.746954,0.771991,0.20342,1.43957e-07,0.20558,0.300504,0.25656,0.425963,0.0696455,0.383291,0.0128729,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.000318278,0.28424,0.562405,0.314429,0.181415,0.282286,0.78,0.616388,0.408413,0.516511,0.322213,0.656109,0.33942,0.61031,0.387276,0.522605,0.802166,0.537348,0.222037,0.416621,0.0174635,0.462712,0.734551,0.215157,0.204817,0.452428,0.138871,0.673493,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.373557,0.523625,0.0980968,0.365487,0.534741,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.0704514,0.00438156,0.637444,0.305885,0.0317395,0.371414,0.30666,0.303709,0.495883,0.386538,0.508064,0.250964,0.383276,0.457886,0.0344603,0.220231,0.509064,0.196976,0.00136659,0.463751,0.601877,0.0529819,0.459728,0.044623,0.563586,0.472935,1.58356e-05,0.273281,0.368095,0.275089,0.384593,0.138622,0.359231,0.339729,0.197805,0.608187,0.387069,0.00817676,0.52832,0.0502872,0.634365,0.00170684,0.17639,8.36739e-05,0.276869,0.205298,0.0337138,2.87813e-06,0.258854,0.188263,0.0719199,0.00386277,0.162568,2.9924e-06,0.0140817,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.012591,0.255516,0.20753,0.119514,5.44055e-05,0.00141426,0.220904,0.222977,0.341681,0.0542164,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.0233967,0.247588,0.222339,0.0673329,0.00178902,0.0391817,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,3.68621e-05,0.0251995,0.158479,0.220319,0.195218,0.124213,0.259632,0.0532009,0.0173907,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.0166394,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.0192232,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,5.11722e-05,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,3.30228e-05,0.0457063,0.347036,0.141729,0.0037817,0.255956,1.42155e-07,0.000150567,0.00569858,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.0457735,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.00135479,0.281727,0.283218,0.0032012,0.164638,0.224257,0.0935776,0.00776295,0.0276507,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.000185889,0.222548,0.00104522,0.157274,0.0251447,0.252796,0.205954,0.00118119
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,1.40581e-07,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.0190579,0.125978,0.0116452,0.0619003,0.010441,0.0982016,0.0528514,0.00606063,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.00181435,0.0907212,0.143747,0.0933697,0.204953,0.00676561,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.0102981,0.184019,0.120917,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.0709764,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.00481292,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.0422457,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.00862108,0.144217,0.269326,0.182599,0.0339971,0.0117862,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.001669,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.00365114,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.0283286,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,4.47691e-05,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.00782633,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.0142864,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.00183069,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.00500828,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.000300991,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.782949,0.635872,0.563047,0.823736,0.807281,0.335423,0.261644,0.261553,0.446302,0.373681,0.309233,0.00510271,0.330703,0.395854,0.000775053,0.178727,0.615744,0.00420832,0.292154,0.405773,0.39729,0.0582602,0.597171,0.187251,0.362792,0.181715,0.423979,0.000241662,0.330894,0.218329,0.427027,0.376924,0.129235,0.647576,0.173877,0.168255,0.0792797,0.415647,0.484505,0.253571,0.276829,0.0509673,0.481778,0.316882,0.223503,0.155672,0.603208,0.283727,0.314747,0.577664,0.291709,0.448095,0.576651,0.416816,0.292835,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.706298,0.821217,0.747852,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.625945,0.0340542,0.163222,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.0012205,0.596648,0.762864,0.0583074,0.1002,0.671377,0.546839,0.551561,0.448039,0.218623,0.312808,0.695172,0.0451077,0.00286634,0.229003,0.650179,0.589326,0.50215,0.0484563,0.34331,0.477304,0.289204,0.327108,0.683186,0.278044,0.807485,0.428671,0.228096,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.516462,0.858756,0.335105,0.144809,0.0111455,0.08628,0.376191,0.447325,0.459928,0.0348837,0.152681,0.0465712,0.137098,0.259235,0.134788,0.00502762,0.546222,0.293698,0.284593,0.343734,0.00622965,0.305777,0.601433,0.503082,0.522888,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.753577,0.0228979,0.525396,0.651524,0.437176,0.269226,0.339277,0.0479524,0.281425,0.141758,0.00351186,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.00966846,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.000255104,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.390395,0.0464827,4.88196e-08,0.00683084,0.104559,0.0899537,0.0866966,0.000772956,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.000101224,0.0666953,0.182185,0.00643465,0.219383,0.062811,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.000384304,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.00594521,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.013859,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.000553033,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,7.60655e-05,0.0936516,0.144075,0.0340203,0.0741807,0.00447267,0.739716,0.655293,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.911304,0.936279,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.0122477,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.0128248,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.000720136,0.311847,0.0062542,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.43956,0.0789454,0.42622,0.448797,0.197484,0.0919774,0.36145,0.406019,0.381071,0.580441,0.643768,0.0198622,0.722159,0.390366,0.48809,0.50058,0.443185,0.169835,0.875915,0.871256,0.227104,0.518585,0.617852,0.38649,0.284625,0.504757,0.55194,0.729153,0.28907,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.777351,0.390974,0.73485,0.683217,0.161598,0.751174,0.644754,0.496032,0.799185,0.37357,0.78509,0.477353,0.78384,0.746954,0.771991,0.20342,1.43957e-07,0.20558,0.300504,0.25656,0.425963,0.0696455,0.383291,0.0128729,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.000318278,0.28424,0.562405,0.314429,0.181415,0.282286,0.78,0.616388,0.408413,0.516511,0.322213,0.656109,0.33942,0.61031,0.387276,0.522605,0.802166,0.537348,0.222037,0.416621,0.0174635,0.462712,0.734551,0.215157,0.204817,0.452428,0.138871,0.673493,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.373557,0.523625,0.0980968,0.365487,0.534741,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.0704514,0.00438156,0.637444,0.305885,0.0317395,0.371414,0.30666,0.303709,0.495883,0.386538,0.508064,0.250964,0.383276,0.457886,0.0344603,0.220231,0.509064,0.196976,0.00136659,0.463751,0.601877,0.0529819,0.459728,0.044623,0.563586,0.472935,1.58356e-05,0.273281,0.368095,0.275089,0.384593,0.138622,0.359231,0.339729,0.197805,0.608187,0.387069,0.00817676,0.52832,0.0502872,0.634365,0.00170684,0.17639,8.36739e-05,0.276869,0.205298,0.0337138,2.87813e-06,0.258854,0.188263,0.0719199,0.00386277,0.162568,2.9924e-06,0.0140817,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.012591,0.255516,0.20753,0.119514,5.44055e-05,0.00141426,0.220904,0.222977,0.341681,0.0542164,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.0233967,0.247588,0.222339,0.0673329,0.00178902,0.0391817,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,3.68621e-05,0.0251995,0.158479,0.220319,0.195218,0.124213,0.259632,0.0532009,0.0173907,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.0166394,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.0192232,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,5.11722e-05,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,3.30228e-05,0.0457063,0.347036,0.141729,0.0037817,0.255956,1.42155e-07,0.000150567,0.00569858,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.0457735,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.00135479,0.281727,0.283218,0.0032012,0.164638,0.224257,0.0935776,0.00776295,0.0276507,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.000185889,0.222548,0.00104522,0.157274,0.0251447,0.252796,0.205954,0.00118119
}}
}}

Revision as of 16:05, 19 October 2012


Full id: C4610_amniotic_immature_cervical_chorionic_Gingival_nasal_epidermoid



Phase1 CAGE Peaks

Hg19::chr6:47666275..47666296,+p3@GPR115
Hg19::chr6:47666310..47666332,+p1@GPR115
Hg19::chr6:47666342..47666355,+p4@GPR115


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen
epithelial cell2.21e-22253
endo-epithelial cell1.21e-1942
endodermal cell7.66e-1558
epithelial cell of alimentary canal7.27e-1120
extraembryonic cell1.37e-0819
respiratory epithelial cell1.70e-0813
Uber Anatomy
Ontology termp-valuen
extraembryonic membrane3.97e-1314
membranous layer3.97e-1314
endoderm-derived structure9.39e-13160
endoderm9.39e-13160
presumptive endoderm9.39e-13160
reproductive structure3.57e-1159
reproductive system3.57e-1159
female organism5.95e-1141
female reproductive organ1.04e-1037
female reproductive system1.04e-1037
chorion5.16e-107
orifice1.06e-0836
reproductive organ2.33e-0848
urinary system structure3.29e-0847
organ component layer5.16e-0866
digestive system6.52e-08145
digestive tract6.52e-08145
primitive gut6.52e-08145
renal system6.62e-0848
endo-epithelium9.61e-0882
female gonad1.85e-0713
extraembryonic structure2.66e-0724
mucosa3.35e-0720
Disease
Ontology termp-valuen
ovarian cancer5.62e-1214
squamous cell carcinoma2.15e-1014
carcinoma3.99e-10106
reproductive organ cancer3.66e-0929
female reproductive organ cancer5.13e-0927
cancer4.74e-07235
disease of cellular proliferation5.27e-07239
cell type cancer9.11e-07143


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CEBPB#105137.971147625824820.001974187055288560.0115741619999597
EP300#203336.77394172622320.003216880500103790.0168312099869916
FOS#235338.99795530889440.001372499272417130.00901468156166106
GTF2F1#2962312.73966087675770.0004835525047438590.0043584827861348
JUN#3725312.51282919233630.0005103313992726250.00446236612597402
JUND#372736.994663941871030.002921845042734990.0157604882976035
MYC#460935.22228187160940.007020843755740150.0295880034301407
NR3C1#2908314.9730233311730.0002978331194675480.0031006173409162
STAT3#6774310.51946499715420.0008589184530415310.0064531029650532
TRIM28#10155318.59052504526250.0001555969297255280.00198006430408241
USF1#739136.361499277207960.00388404057290560.0191071744415303
USF2#7392312.99219738506960.0004558979393427810.00422893017914741



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.