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Coexpression cluster:C1154

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Full id: C1154_CD14_Natural_CD8_CD4_Neutrophils_Peripheral_CD19



Phase1 CAGE Peaks

Hg19::chr11:73088095..73088146,-p@chr11:73088095..73088146
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Hg19::chr15:45005250..45005268,-p@chr15:45005250..45005268
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Hg19::chr15:86125393..86125411,-p@chr15:86125393..86125411
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Hg19::chr1:235465457..235465468,-p@chr1:235465457..235465468
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Hg19::chr4:153404548..153404551,-p@chr4:153404548..153404551
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Hg19::chr5:131808700..131808705,-p1@ENST00000443093
Hg19::chrY:15028407..15028411,+p@chrY:15028407..15028411
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
leukocyte8.37e-54136
nongranular leukocyte4.21e-46115
hematopoietic lineage restricted progenitor cell9.98e-43120
hematopoietic stem cell1.06e-42168
angioblastic mesenchymal cell1.06e-42168
hematopoietic cell2.51e-42177
hematopoietic oligopotent progenitor cell2.75e-40161
hematopoietic multipotent progenitor cell2.75e-40161
myeloid leukocyte2.83e-3372
classical monocyte1.37e-3042
CD14-positive, CD16-negative classical monocyte1.37e-3042
defensive cell1.21e-2748
phagocyte1.21e-2748
myeloid lineage restricted progenitor cell5.03e-2566
granulocyte monocyte progenitor cell1.66e-2467
monopoietic cell3.71e-2259
monocyte3.71e-2259
monoblast3.71e-2259
promonocyte3.71e-2259
macrophage dendritic cell progenitor3.77e-2161
myeloid cell1.28e-20108
common myeloid progenitor1.28e-20108
lymphocyte7.94e-1953
common lymphoid progenitor7.94e-1953
nucleate cell7.33e-1855
lymphoid lineage restricted progenitor cell9.19e-1852
intermediate monocyte3.83e-149
CD14-positive, CD16-positive monocyte3.83e-149
CD4-positive, alpha-beta T cell7.59e-136
T cell8.57e-1325
pro-T cell8.57e-1325
mature alpha-beta T cell2.78e-1218
alpha-beta T cell2.78e-1218
immature T cell2.78e-1218
mature T cell2.78e-1218
immature alpha-beta T cell2.78e-1218
stuff accumulating cell1.84e-1187
mesenchymal cell2.23e-10354
connective tissue cell7.65e-10361
granulocyte3.05e-098
motile cell1.88e-08386
circulating cell1.94e-086
natural killer cell7.74e-083
pro-NK cell7.74e-083
single nucleate cell1.85e-073
mononuclear cell1.85e-073
non-classical monocyte5.63e-073
CD14-low, CD16-positive monocyte5.63e-073
naive T cell8.24e-073
basophil9.10e-073
Uber Anatomy
Ontology termp-valuen
hematopoietic system3.73e-2898
blood island3.73e-2898
hemolymphoid system5.73e-27108
immune system4.20e-2293
bone marrow1.87e-2076
bone element2.95e-1882
skeletal element8.53e-1690
skeletal system2.70e-13100
connective tissue4.05e-09371
lateral plate mesoderm1.73e-07203


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.00215847
MA0004.10.502801
MA0006.10.904424
MA0007.10.483857
MA0009.10.973289
MA0014.10.0723474
MA0017.10.380797
MA0019.10.652951
MA0024.10.867125
MA0025.11.10816
MA0027.12.59001
MA0028.10.35747
MA0029.10.886702
MA0030.10.875089
MA0031.10.809638
MA0038.10.60704
MA0040.10.892629
MA0041.11.29551
MA0042.10.48922
MA0043.10.973609
MA0046.12.20916
MA0048.10.120314
MA0050.10.490116
MA0051.10.602745
MA0052.10.896548
MA0055.10.158296
MA0056.10
MA0057.11.22064
MA0058.10.406232
MA0059.10.404929
MA0060.10.224688
MA0061.10.198335
MA0063.10
MA0066.10.607474
MA0067.11.29359
MA0068.10.488375
MA0069.10.958358
MA0070.10.947018
MA0071.10.567661
MA0072.10.942461
MA0073.10.126287
MA0074.11.46532
MA0076.10.422297
MA0077.10.934645
MA0078.10.703614
MA0081.10.405093
MA0083.10.980893
MA0084.11.48179
MA0087.10.939982
MA0088.10.0723293
MA0089.10
MA0090.10.436918
MA0091.10.505453
MA0092.10.467172
MA0093.10.344385
MA0095.10
MA0098.10
MA0100.10.621149
MA0101.10.347695
MA0103.10.332048
MA0105.10.104569
MA0106.10.648997
MA0107.10.274127
MA0108.20.806528
MA0109.10
MA0111.10.45062
MA0113.10.665691
MA0114.10.269076
MA0115.11.21667
MA0116.10.277571
MA0117.11.01134
MA0119.10.388712
MA0122.11.03753
MA0124.11.17486
MA0125.11.0901
MA0130.10
MA0131.10.722072
MA0132.10
MA0133.10
MA0135.11.00402
MA0136.10.614215
MA0139.10.186511
MA0140.10.564957
MA0141.10.403171
MA0142.10.777365
MA0143.10.66587
MA0144.10.254954
MA0145.10.276317
MA0146.10.0127148
MA0147.10.281049
MA0148.10.528066
MA0149.15.89542
MA0062.20.193221
MA0035.20.564239
MA0039.20.0553061
MA0138.20.704862
MA0002.20.213296
MA0137.20.36398
MA0104.20.223944
MA0047.20.636643
MA0112.20.0758925
MA0065.20.282161
MA0150.10.430951
MA0151.10
MA0152.10.571637
MA0153.11.07307
MA0154.10.102476
MA0155.10.071478
MA0156.10.36627
MA0157.10.749547
MA0158.10
MA0159.10.281681
MA0160.10.543522
MA0161.10
MA0162.10.0249953
MA0163.10.0765396
MA0164.10.678332
MA0080.20.344472
MA0018.20.650405
MA0099.20.572
MA0079.20.184526
MA0102.21.51913
MA0258.10.245543
MA0259.10.289405
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.