Personal tools

MCL coexpression mm9:821

From FANTOM5_SSTAR

Jump to: navigation, search


Phase1 CAGE Peaks

  Short description
Mm9::chr14:66851239..66851256,- p@chr14:66851239..66851256
-
Mm9::chr18:67405472..67405496,- p4@Mppe1
Mm9::chr19:21788330..21788351,+ p@chr19:21788330..21788351
+
Mm9::chr1:165992178..165992189,+ p4@Sell
Mm9::chr2:118554166..118554182,- p3@Plcb2
Mm9::chr2:174439659..174439719,+ p@chr2:174439659..174439719
+
Mm9::chr4:123241915..123241944,- p3@Macf1
Mm9::chr7:113788143..113788177,- p1@uc009izu.1
p1@uc009izv.1
p1@uc012fru.1
Mm9::chr8:47824807..47824868,- p1@ENSMUST00000126988
p1@uc009lqn.1


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0006620posttranslational protein targeting to membrane0.0497945760311456



Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data


Uber Anatomy
Ontology termp-valuen
hemolymphoid system1.22e-1448
immune system1.22e-1448
hematopoietic system3.31e-1345
blood island3.31e-1345
mixed endoderm/mesoderm-derived structure3.62e-1035
endoderm-derived structure4.37e-10118
endoderm4.37e-10118
presumptive endoderm4.37e-10118
hemopoietic organ4.69e-1029
immune organ4.69e-1029
digestive system5.66e-10116
digestive tract5.66e-10116
primitive gut5.66e-10116
subdivision of digestive tract2.38e-09114
foregut8.70e-0980
lateral plate mesoderm3.68e-0887
gland of gut6.78e-0824
respiratory system1.18e-0742
pharynx1.59e-0724
upper respiratory tract1.59e-0724
chordate pharynx1.59e-0724
pharyngeal arch system1.59e-0724
pharyngeal region of foregut1.59e-0724
thymus1.87e-0723
neck1.87e-0723
respiratory system epithelium1.87e-0723
hemolymphoid system gland1.87e-0723
pharyngeal epithelium1.87e-0723
thymic region1.87e-0723
pharyngeal gland1.87e-0723
entire pharyngeal arch endoderm1.87e-0723
thymus primordium1.87e-0723
early pharyngeal endoderm1.87e-0723
respiratory tract2.90e-0741
mesoderm5.94e-07120
mesoderm-derived structure5.94e-07120
presumptive mesoderm5.94e-07120
endo-epithelium7.55e-0769


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0343274
MA0004.10.394951
MA0006.10.238555
MA0007.10.38073
MA0009.10.82278
MA0014.10.0421798
MA0017.10.726051
MA0019.10.642876
MA0024.10.779446
MA0025.11.05446
MA0027.12.46647
MA0028.10.24786
MA0029.10.757957
MA0030.10.764448
MA0031.10.729293
MA0038.10.534262
MA0040.10.835181
MA0041.10.323687
MA0042.10.311486
MA0043.10.918718
MA0046.10.858391
MA0048.10.589612
MA0050.12.88159
MA0051.10.542972
MA0052.10.84317
MA0055.10.221677
MA0056.10
MA0057.10.549903
MA0058.10.305206
MA0059.10.316585
MA0060.10.9744
MA0061.10.56663
MA0063.10
MA0066.10.523573
MA0067.11.16502
MA0068.10.266547
MA0069.10.843506
MA0070.10.833895
MA0071.10.431174
MA0072.10.825495
MA0073.11.0215
MA0074.10.488775
MA0076.10.765781
MA0077.10.804033
MA0078.10.575205
MA0081.10.897217
MA0083.10.917931
MA0084.11.49188
MA0087.10.87515
MA0088.10.18495
MA0089.10
MA0090.10.951436
MA0091.11.04993
MA0092.10.95209
MA0093.10.2553
MA0095.10
MA0098.10
MA0100.10.477594
MA0101.10.867731
MA0103.10.272167
MA0105.10.35523
MA0106.10.582805
MA0107.10.73569
MA0108.20.665343
MA0109.10
MA0111.10.375908
MA0113.10.555251
MA0114.10.19245
MA0115.10.921497
MA0116.10.238371
MA0117.10.88947
MA0119.10.868953
MA0122.10.909168
MA0124.11.11203
MA0125.11.03833
MA0130.10
MA0131.10.638414
MA0132.10
MA0133.10
MA0135.10.954884
MA0136.10.508047
MA0139.10.867077
MA0140.10.477483
MA0141.10.29014
MA0142.10.714976
MA0143.10.571221
MA0144.10.195095
MA0145.10.0543321
MA0146.10.0111657
MA0147.10.205697
MA0148.10.410398
MA0149.10.330018
MA0062.21.7688
MA0035.20.482026
MA0039.20.175249
MA0138.20.630612
MA0002.20.145685
MA0137.20.287486
MA0104.20.157347
MA0047.20.533516
MA0112.20.0543294
MA0065.20.44341
MA0150.10.380623
MA0151.10
MA0152.10.53362
MA0153.10.971406
MA0154.10.982083
MA0155.10.0631765
MA0156.11.39718
MA0157.10.683365
MA0158.10
MA0159.10.214506
MA0160.10.413266
MA0161.10
MA0162.10.0672805
MA0163.10.160428
MA0164.11.26737
MA0080.22.08461
MA0018.20.51781
MA0099.20.624421
MA0079.20.670082
MA0102.21.5442
MA0258.10.180934
MA0259.10.196451
MA0442.10