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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000310,UBERON:0000465,UBERON:0000468,UBERON:0000475,UBERON:0000915,UBERON:0001062,UBERON:0001443,UBERON:0005482
+
|DRA_sample_Accession=CAGE@SAMD00005638
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
+
|accession_numbers=CAGE;DRX007837;DRR008709;DRZ000134;DRZ001519;DRZ011484;DRZ012869
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:1612,DOID:162,DOID:299,DOID:305,DOID:4,DOID:5093,DOID:7
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
 +
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:5093,DOID:305,DOID:299,DOID:1612
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100093,FF:0100297,FF:0101912,FF:0101120,FF:0100816,FF:0100167,FF:0100356
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
|
+
|
 
|fonse_cell_line=FF:0100816,FF:0101120
 
|fonse_cell_line=FF:0100816,FF:0101120
 
|fonse_cell_line_closure=FF:0100816,FF:0101120
 
|fonse_cell_line_closure=FF:0100816,FF:0101120
Line 35: Line 40:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg38.nobarcode.ctss.bed.gz
 
|id=FF:10482-107A5
 
|id=FF:10482-107A5
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100093
+
|is_a=EFO:0002091;;FF:0000210;;FF:0100093
 +
|is_obsolete=
 +
|library_id=CNhs11943
 +
|library_id_phase_based=2:CNhs11943
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10482
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10482
 
|name=breast carcinoma cell line:MCF7
 
|name=breast carcinoma cell line:MCF7
 
|namespace=FANTOM5
 
|namespace=FANTOM5
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|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs11943,LSID836,release011,COMPLETED
 
|profile_hcage=CNhs11943,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.090414962128934,0,0.601654884227713,0.654407902681811,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297386995146718,0,0,0,0,0,0.0841300627524689,0,0,0.2291749157066,0,0,0,0,0,0,0,0,0,0,0.100517959999704,0,0.223983268757279,0.100517959999704,0,0,0,0,0,0,0,0.101151474994826,0,0,0,0.25073299221532,0.100517959999704,0,0,0.265139144242857,0,0,0.311331528448019,0,0,0,0,0,0,0,0,0.25073299221532,0,0,0,0,0.182087959020526,0,0,0,0,0.205256119020248,0,0.0143769702104931,0,0,0.0410902408717611,0,0,0,0.00391408224045819,0.281394196477096,-0.120153423185605,0.050258979999852,0,0,0,-0.0980353512377064,0.619424924374218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.489032979231263,0,0,0.400449574123447,0.59396167483282,0,0,0.232384899870873,0,0,0
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|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.362131505485463,0,0.309994278040792,0,0,0.100517959999704,0,0,0,0.114952630199898,0,-0.164091940711217,0.0385728164970545,0,0,-0.0307838127667605,0,0.100517959999704,0,0,0,0,0.100517959999704,0,0,-0.128119866952565,0,0.259581726451477,0,0,0,0,0,0.00452204714238441,0,-0.0192609221291139,0.293787244408094,0,0,0,0.015114937728405,0.0594634046038934,0,-0.0203615237940362,0.0177977916762871,0,0.10149724904795,0.126375462239344,0,0,0,-0.574537965946979,0.235148193530563,0,0,0.033217287268522,-0.131090638560807,0,0,-0.391044581551635,0,-0.0410181272879888,-0.0334311694649865,0,0.100190164648335,0,0,0,0,0,0,0,0.100517959999704,0.309994278040792,0,0,-0.0574934668214365,0.123721408816177,0.0139998008843405,0,0.182087959020526,0,0.159983460009654,0,0,-0.272768195956862,-0.0340468710071302,0.221687205845805,0.393711735089134,0,-0.302389727009913,0.00732114491195025,0.824683227264087,0.268717700219689,-0.147401849371139,-0.189981719549847,-0.00122862902548715,-0.494988709994142,0.22973219467714,0.326411166033769,0.222597391115783,0.0954895465832351,-0.326609165276329,0.765113553736924,0,0.362131505485463,0,0.558168916069911,0,0.152990569640817,0.284265551837598,0.134859362428386,0.0530389564960182,0.222631456258581,0.00151309737383125,-0.475143114713454,0.0107264515431817,0.0315965263346685,-0.00558909854614035,-0.00445180193068251,0,1.19267767490566,0.118504077555163,-0.0144075390952935,0.184141188897386,0.244527783151059,0.000333112489098953,0.30901308647464,0.113743697943158,0,-0.053821622984675,0.0410902408717611,0,0,0.111987173907494,0,0,0,0,0.100517959999704,0.524378982366188,0.215444515317758,0.0771387164852469,0,0.087610022000068,0.117334734134857,0.108131923994118,0,0.113818711055212,0,0.110601003299823,0.380773761372679,0.00760297930017734,0.104738115333783,-0.172415101042871,0.0774019227004796,-0.240306846371211,0.583578318812271,0.274492735586685,0.0659996145640456,0.281394196477096,0.40373781011543,0.242560836844978,-0.0881268324752877,0,-0.88354475051838,-0.0374729859974284,0.148407865049688,-0.187034630086762,0,0.175457338167561,0,0.301260427361368,0,-0.390933151435607,-0.358345792452714,1.05499911024142,0.00259307837236156,0,0.182181593026909,-0.0331942794260496,0.100517959999704,0,0,0.615437969371795,-0.150367083334639,0.295940561003882,-0.111132467864885,-0.0479454771689315,0,0.142008103986322,0,0,0.42951938184213,0.0152569544509314,0.100517959999704,0.0419746757370063,0.0815614905655101,0.223760996002315,0.0661168855855924,0.100517959999704,0,0.644119768842202,0,0.182087959020526,0.326160198557948,0,0.909311912984906,-0.0712383824662293,0.140965877136831,0.262648743357644,0,0.25073299221532,0.0732052262501444,0,-0.131944633006421,0,0,0.246936967159408,-0.116628112990133,0,0,0,0.086820289928959,0,0,0,0,0,0,0.0154926680109236,0.321917118750435,-0.172745371195922,0.615437969371795,-0.0880305421253711,0,0.100517959999704,0,0,0,0,0,0,-1.59233083881968,0.133156857854266,-0.12301741567642,0,0,0,0,0.308523365351768,-0.102718602095019,0,0.276812449163484,0,0.205256119020248,0,0,0.0143769702104931,0,0,0,0,-0.057730457053664,-0.0210054669021709,0,0,0.050258979999852,0.749816869517174,0,0,0,0,-0.00665431786177217,0,0,0.161060374899241,0,-0.153040444075128,0.018936080452863,0,-0.0587662278146575,-0.49521123514766,0.406749002170883,0,0,0.325769259033931,0,0,-0.117286216584243,0,0.489032979231263,0,0,0,0,0,0.100517959999704,0,0.147816993085707,0,0,0,0,0,0,0,0,0,0,0,-0.256991482263049,0.00829390334119402,-0.0640596705171081,0,0,0,0,0,0,0.238017360873718,0.591603870809302,0,0,0.141302959510115,0,0,0.25073299221532,0,0,0.0176070395680211,0,0,0,0,0,0.265139144242857,0,0,0,0,0.78456903745838,0,0,0.770172948884098,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127413906179872,0.601654884227713,0,0.182087959020526,0,0,0,0,0,0.340604671165705,0,0.524246767905243,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.090414962128934,0,0,0,0,0,0.00455855262611755,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0,0.050258979999852,0,0,-0.202858458390789,0,-0.105119556952383,0.0404531873689626,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489032979231263,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.0841300627524689,0,0,0.432213958104717,0,0,0,0,0,0,0.410999359101904,-0.102154647080416,-0.0180373432307606,0.100517959999704,0,0,0.224023544561465,0.25073299221532,0,0.0040152572722385,0,0.0337405725808031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0,0,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0,0.297386995146718,0,0,0,0,0,0,0,0.970053296004708,0,0,0,0,0.091043979510263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182087959020526,0.12536649610766,0,0,0,0,0,0,0.0162476167244357,0.100517959999704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328656687392477,0,0,0,-0.0309982706365173,0,0,0,0,0,0,0.100517959999704,0,0.408675155661116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0.680873779988847,0,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0,0.05229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|rna_box=107
 
|rna_box=107
 
|rna_catalog_number=
 
|rna_catalog_number=
Line 57: Line 77:
 
|rna_weight_ug=36.09625
 
|rna_weight_ug=36.09625
 
|sample_age=69
 
|sample_age=69
 +
|sample_category=cell lines
 
|sample_cell_catalog=RCB1904
 
|sample_cell_catalog=RCB1904
 
|sample_cell_line=MCF7
 
|sample_cell_line=MCF7
Line 69: Line 90:
 
|sample_ethnicity=C
 
|sample_ethnicity=C
 
|sample_experimental_condition=
 
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.36857351159566e-262!GO:0043226;organelle;1.13996125521557e-222!GO:0043229;intracellular organelle;2.86493357060693e-222!GO:0043231;intracellular membrane-bound organelle;2.86493357060693e-222!GO:0043227;membrane-bound organelle;5.08879463952875e-222!GO:0005737;cytoplasm;1.39518588880318e-162!GO:0044422;organelle part;3.5680980594362e-148!GO:0044446;intracellular organelle part;6.27146056631992e-147!GO:0044444;cytoplasmic part;1.43374819794714e-115!GO:0005634;nucleus;2.53773844999791e-109!GO:0032991;macromolecular complex;9.41990665081325e-99!GO:0044237;cellular metabolic process;2.70937026447191e-95!GO:0044238;primary metabolic process;7.80061073627328e-94!GO:0043170;macromolecule metabolic process;1.69781208521354e-89!GO:0030529;ribonucleoprotein complex;2.82751509929474e-86!GO:0044428;nuclear part;2.99335943320559e-80!GO:0003723;RNA binding;5.35841134580625e-76!GO:0043233;organelle lumen;3.53698516308523e-75!GO:0031974;membrane-enclosed lumen;3.53698516308523e-75!GO:0005515;protein binding;6.03581886219269e-72!GO:0005739;mitochondrion;4.92052973037008e-68!GO:0043283;biopolymer metabolic process;2.18735892671503e-60!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.10494797243873e-56!GO:0010467;gene expression;9.58737203820602e-56!GO:0006396;RNA processing;3.74808565930341e-52!GO:0031981;nuclear lumen;1.14182206676902e-50!GO:0005840;ribosome;5.86535570619892e-50!GO:0043234;protein complex;4.4084048128895e-49!GO:0015031;protein transport;3.14381959258341e-47!GO:0033036;macromolecule localization;3.66454097198686e-47!GO:0016043;cellular component organization and biogenesis;2.06134212171114e-46!GO:0031090;organelle membrane;2.22747838539279e-46!GO:0006412;translation;1.36908913275443e-45!GO:0016071;mRNA metabolic process;4.38032697633695e-44!GO:0044429;mitochondrial part;1.31168623721725e-43!GO:0003735;structural constituent of ribosome;5.82544826455016e-43!GO:0008104;protein localization;1.34754006294914e-42!GO:0045184;establishment of protein localization;1.1839168231659e-41!GO:0019538;protein metabolic process;2.90474365286124e-41!GO:0031967;organelle envelope;1.10602203894924e-39!GO:0031975;envelope;1.89361724758752e-39!GO:0006259;DNA metabolic process;4.92354612333518e-39!GO:0008380;RNA splicing;2.8705851387119e-38!GO:0043228;non-membrane-bound organelle;4.23841594032022e-38!GO:0043232;intracellular non-membrane-bound organelle;4.23841594032022e-38!GO:0003676;nucleic acid binding;6.1944332876772e-38!GO:0033279;ribosomal subunit;6.68105481997265e-38!GO:0006397;mRNA processing;2.88189935436391e-37!GO:0006996;organelle organization and biogenesis;9.3864861452469e-37!GO:0044260;cellular macromolecule metabolic process;1.13159344599328e-36!GO:0044267;cellular protein metabolic process;1.51541886774828e-36!GO:0046907;intracellular transport;1.93465831803734e-34!GO:0065003;macromolecular complex assembly;6.28731993665416e-34!GO:0005829;cytosol;6.77075818322574e-34!GO:0044249;cellular biosynthetic process;4.52247897940089e-33!GO:0000166;nucleotide binding;3.4842596940973e-31!GO:0009059;macromolecule biosynthetic process;9.52239496230191e-31!GO:0009058;biosynthetic process;1.42918260925301e-30!GO:0016070;RNA metabolic process;1.88356610346928e-30!GO:0005654;nucleoplasm;2.12624144676794e-30!GO:0022607;cellular component assembly;1.29659153891425e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.40080907993918e-29!GO:0019866;organelle inner membrane;1.91374931220265e-28!GO:0005740;mitochondrial envelope;2.87333272845821e-28!GO:0006886;intracellular protein transport;5.06350472664698e-28!GO:0005681;spliceosome;1.63447567464218e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.6840137460468e-27!GO:0031966;mitochondrial membrane;1.31005313159013e-26!GO:0005743;mitochondrial inner membrane;1.63466948466592e-26!GO:0007049;cell cycle;4.36346816493099e-25!GO:0044451;nucleoplasm part;9.61319843608253e-25!GO:0051649;establishment of cellular localization;4.4405463277686e-23!GO:0016462;pyrophosphatase activity;4.4405463277686e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.64194531868052e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;4.76067995648141e-23!GO:0017111;nucleoside-triphosphatase activity;1.06990556643153e-22!GO:0044445;cytosolic part;1.07945581838329e-22!GO:0051641;cellular localization;1.6727407443963e-22!GO:0032553;ribonucleotide binding;3.46118136034033e-22!GO:0032555;purine ribonucleotide binding;3.46118136034033e-22!GO:0006119;oxidative phosphorylation;6.1988676342642e-22!GO:0005730;nucleolus;5.14642532306822e-21!GO:0051276;chromosome organization and biogenesis;6.35516345555547e-21!GO:0017076;purine nucleotide binding;9.73724017408263e-21!GO:0044455;mitochondrial membrane part;2.43612155752276e-20!GO:0016874;ligase activity;7.8540127306643e-20!GO:0006512;ubiquitin cycle;9.3446128396056e-20!GO:0008134;transcription factor binding;1.48478160848886e-19!GO:0015934;large ribosomal subunit;1.63318465749882e-19!GO:0006974;response to DNA damage stimulus;1.95221619756756e-19!GO:0015935;small ribosomal subunit;2.40993469949934e-19!GO:0005524;ATP binding;2.41132524568292e-19!GO:0032559;adenyl ribonucleotide binding;2.50818699484287e-19!GO:0031980;mitochondrial lumen;9.07458181412465e-19!GO:0005759;mitochondrial matrix;9.07458181412465e-19!GO:0005694;chromosome;1.01122424311113e-18!GO:0022618;protein-RNA complex assembly;1.11560400156191e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;2.54169961432637e-18!GO:0006457;protein folding;3.07997745978522e-18!GO:0012505;endomembrane system;4.45282546341193e-18!GO:0030554;adenyl nucleotide binding;1.01768730717155e-17!GO:0006323;DNA packaging;1.46704617004718e-17!GO:0044265;cellular macromolecule catabolic process;1.95925482281972e-17!GO:0022402;cell cycle process;3.1625721240932e-17!GO:0016887;ATPase activity;3.68750604327845e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.25830957850958e-17!GO:0006281;DNA repair;4.46850561540748e-17!GO:0019941;modification-dependent protein catabolic process;7.83571928159123e-17!GO:0043632;modification-dependent macromolecule catabolic process;7.83571928159123e-17!GO:0008135;translation factor activity, nucleic acid binding;8.71248016718615e-17!GO:0043285;biopolymer catabolic process;1.02618186831334e-16!GO:0044257;cellular protein catabolic process;1.05497392253905e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.27224110217056e-16!GO:0044427;chromosomal part;1.93098193989235e-16!GO:0042623;ATPase activity, coupled;2.37176184769846e-16!GO:0005746;mitochondrial respiratory chain;5.3683391468659e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.68339561481182e-15!GO:0009719;response to endogenous stimulus;1.1214630495511e-14!GO:0048770;pigment granule;1.16405054555619e-14!GO:0042470;melanosome;1.16405054555619e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.16902289592029e-14!GO:0003954;NADH dehydrogenase activity;1.16902289592029e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.16902289592029e-14!GO:0000278;mitotic cell cycle;1.81520771076931e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.99792151608691e-14!GO:0000375;RNA splicing, via transesterification reactions;1.99792151608691e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.99792151608691e-14!GO:0031965;nuclear membrane;2.56808142687573e-14!GO:0009057;macromolecule catabolic process;2.81387719678317e-14!GO:0051082;unfolded protein binding;3.14767550896597e-14!GO:0043412;biopolymer modification;3.27148755221247e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.08059222806619e-14!GO:0005761;mitochondrial ribosome;8.12381636184324e-14!GO:0000313;organellar ribosome;8.12381636184324e-14!GO:0044248;cellular catabolic process;2.03912617345752e-13!GO:0006260;DNA replication;2.2318115143388e-13!GO:0048193;Golgi vesicle transport;2.84494340020884e-13!GO:0030163;protein catabolic process;3.24118310901953e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.14025785987596e-13!GO:0051301;cell division;4.66343850862514e-13!GO:0051186;cofactor metabolic process;5.85517752408729e-13!GO:0006366;transcription from RNA polymerase II promoter;6.30324543233951e-13!GO:0000502;proteasome complex (sensu Eukaryota);7.80314328854183e-13!GO:0006333;chromatin assembly or disassembly;8.33594989203441e-13!GO:0006605;protein targeting;8.33594989203441e-13!GO:0004386;helicase activity;1.58803050804584e-12!GO:0005635;nuclear envelope;1.65116990043441e-12!GO:0016568;chromatin modification;1.67784593503879e-12!GO:0005794;Golgi apparatus;1.68151178723901e-12!GO:0003712;transcription cofactor activity;1.71259976035301e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.77219921997986e-12!GO:0042773;ATP synthesis coupled electron transport;1.77219921997986e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.86456564588482e-12!GO:0045271;respiratory chain complex I;1.86456564588482e-12!GO:0005747;mitochondrial respiratory chain complex I;1.86456564588482e-12!GO:0016604;nuclear body;2.46710137643516e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.15279235685493e-12!GO:0008026;ATP-dependent helicase activity;6.40209134708964e-12!GO:0042254;ribosome biogenesis and assembly;7.58535390398115e-12!GO:0006464;protein modification process;9.62388531014475e-12!GO:0044453;nuclear membrane part;1.00119135696009e-11!GO:0003743;translation initiation factor activity;1.12347981441375e-11!GO:0044432;endoplasmic reticulum part;1.12358233398309e-11!GO:0000087;M phase of mitotic cell cycle;1.2096230007831e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.42865738687762e-11!GO:0006913;nucleocytoplasmic transport;1.43555298368402e-11!GO:0000785;chromatin;1.4420874416678e-11!GO:0016192;vesicle-mediated transport;1.66084314626368e-11!GO:0006399;tRNA metabolic process;1.75012125989923e-11!GO:0022403;cell cycle phase;2.44422327449847e-11!GO:0007067;mitosis;2.45968128301759e-11!GO:0051169;nuclear transport;4.02780075264632e-11!GO:0005783;endoplasmic reticulum;4.30951804006036e-11!GO:0043687;post-translational protein modification;5.06451885255911e-11!GO:0006732;coenzyme metabolic process;6.26793558187523e-11!GO:0006413;translational initiation;6.81697753008001e-11!GO:0006446;regulation of translational initiation;1.12294545577919e-10!GO:0008565;protein transporter activity;1.7145081560719e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.78960183135779e-10!GO:0016607;nuclear speck;2.97533997539329e-10!GO:0005643;nuclear pore;3.14733189379454e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.29806317621619e-10!GO:0000279;M phase;5.1679296718542e-10!GO:0065004;protein-DNA complex assembly;5.66177173340158e-10!GO:0015630;microtubule cytoskeleton;5.94104612185119e-10!GO:0050657;nucleic acid transport;5.94104612185119e-10!GO:0051236;establishment of RNA localization;5.94104612185119e-10!GO:0050658;RNA transport;5.94104612185119e-10!GO:0006403;RNA localization;6.89222772927465e-10!GO:0008639;small protein conjugating enzyme activity;9.78937660722482e-10!GO:0019829;cation-transporting ATPase activity;9.90901140654979e-10!GO:0019787;small conjugating protein ligase activity;1.58661345235771e-09!GO:0004842;ubiquitin-protein ligase activity;1.74212632196678e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.87506174532855e-09!GO:0006461;protein complex assembly;2.34704443634142e-09!GO:0050794;regulation of cellular process;2.52575978340596e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.97172463882174e-09!GO:0005789;endoplasmic reticulum membrane;4.5751729548739e-09!GO:0032446;protein modification by small protein conjugation;4.6400707418736e-09!GO:0051726;regulation of cell cycle;7.77165605665726e-09!GO:0015986;ATP synthesis coupled proton transport;8.78777115645731e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.78777115645731e-09!GO:0019222;regulation of metabolic process;1.20237196972366e-08!GO:0016564;transcription repressor activity;1.24806751185e-08!GO:0000074;regulation of progression through cell cycle;1.33818224072916e-08!GO:0006163;purine nucleotide metabolic process;1.36981723926968e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.50305548719846e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.50305548719846e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.50305548719846e-08!GO:0016567;protein ubiquitination;1.58547897445246e-08!GO:0016881;acid-amino acid ligase activity;1.67297304284925e-08!GO:0006164;purine nucleotide biosynthetic process;1.7571912528216e-08!GO:0003697;single-stranded DNA binding;2.25687387572931e-08!GO:0017038;protein import;2.31448119201899e-08!GO:0043566;structure-specific DNA binding;2.56187570502836e-08!GO:0046930;pore complex;2.69375063775307e-08!GO:0009259;ribonucleotide metabolic process;2.86629754107594e-08!GO:0051028;mRNA transport;2.91289101307481e-08!GO:0005768;endosome;3.16936840516074e-08!GO:0043038;amino acid activation;3.64745537544738e-08!GO:0006418;tRNA aminoacylation for protein translation;3.64745537544738e-08!GO:0043039;tRNA aminoacylation;3.64745537544738e-08!GO:0051188;cofactor biosynthetic process;3.86460444280108e-08!GO:0000245;spliceosome assembly;4.18566934698338e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.18566934698338e-08!GO:0065002;intracellular protein transport across a membrane;4.23839715014496e-08!GO:0005793;ER-Golgi intermediate compartment;5.21940702272513e-08!GO:0009150;purine ribonucleotide metabolic process;6.47444647672428e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.71921918545765e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.71921918545765e-08!GO:0009260;ribonucleotide biosynthetic process;7.60574365575766e-08!GO:0009152;purine ribonucleotide biosynthetic process;8.3192893370156e-08!GO:0012501;programmed cell death;8.3192893370156e-08!GO:0006754;ATP biosynthetic process;8.88482091291706e-08!GO:0006753;nucleoside phosphate metabolic process;8.88482091291706e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.16327040713459e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.2963093416238e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.2963093416238e-08!GO:0006915;apoptosis;1.48486838820495e-07!GO:0006334;nucleosome assembly;1.60701445912017e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.6109988829851e-07!GO:0009141;nucleoside triphosphate metabolic process;1.68699283747226e-07!GO:0009055;electron carrier activity;1.78535796599745e-07!GO:0031497;chromatin assembly;2.2320145319767e-07!GO:0005667;transcription factor complex;2.2320145319767e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.24448530018166e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.24448530018166e-07!GO:0048475;coated membrane;2.25177279664486e-07!GO:0030117;membrane coat;2.25177279664486e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.5981721407111e-07!GO:0006261;DNA-dependent DNA replication;2.5981721407111e-07!GO:0006364;rRNA processing;2.60929183119976e-07!GO:0031324;negative regulation of cellular metabolic process;3.08452375472882e-07!GO:0009108;coenzyme biosynthetic process;3.16569090717581e-07!GO:0046034;ATP metabolic process;3.61044274631565e-07!GO:0044431;Golgi apparatus part;3.68287807973156e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.70147424070996e-07!GO:0003714;transcription corepressor activity;3.90444399768396e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.24320284801721e-07!GO:0016072;rRNA metabolic process;4.74736776193672e-07!GO:0000151;ubiquitin ligase complex;5.09331692394663e-07!GO:0006350;transcription;5.25896928496978e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.30794670685559e-07!GO:0005813;centrosome;5.72191059832045e-07!GO:0009056;catabolic process;5.80036074856557e-07!GO:0008219;cell death;7.34550582657417e-07!GO:0016265;death;7.34550582657417e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.99040445659066e-07!GO:0006793;phosphorus metabolic process;8.7169272721328e-07!GO:0006796;phosphate metabolic process;8.7169272721328e-07!GO:0045259;proton-transporting ATP synthase complex;9.28884296664388e-07!GO:0007005;mitochondrion organization and biogenesis;1.01656399099675e-06!GO:0005815;microtubule organizing center;1.01656399099675e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.192585689188e-06!GO:0030120;vesicle coat;1.26513736391939e-06!GO:0030662;coated vesicle membrane;1.26513736391939e-06!GO:0031323;regulation of cellular metabolic process;1.32158169965828e-06!GO:0016563;transcription activator activity;1.33330694307706e-06!GO:0043623;cellular protein complex assembly;1.51641029351169e-06!GO:0003724;RNA helicase activity;1.52191136048035e-06!GO:0009060;aerobic respiration;1.97797035534468e-06!GO:0016740;transferase activity;2.10914065340793e-06!GO:0006752;group transfer coenzyme metabolic process;2.20072127167659e-06!GO:0003682;chromatin binding;2.4046163247613e-06!GO:0009892;negative regulation of metabolic process;2.47264952626559e-06!GO:0016481;negative regulation of transcription;2.69187622687785e-06!GO:0005819;spindle;2.70299334824229e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.97636975232235e-06!GO:0016779;nucleotidyltransferase activity;3.03204925799701e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.95167689053245e-06!GO:0003713;transcription coactivator activity;4.17962923145044e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.34563348478148e-06!GO:0016787;hydrolase activity;6.65711027439146e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.91720355078686e-06!GO:0006402;mRNA catabolic process;9.29005755992424e-06!GO:0016023;cytoplasmic membrane-bound vesicle;9.94004218368411e-06!GO:0051170;nuclear import;1.06481892112258e-05!GO:0016310;phosphorylation;1.09090802387349e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.1223760895631e-05!GO:0031988;membrane-bound vesicle;1.14141807417014e-05!GO:0051168;nuclear export;1.16179374177696e-05!GO:0051427;hormone receptor binding;1.16498166974179e-05!GO:0005798;Golgi-associated vesicle;1.25154093469345e-05!GO:0010468;regulation of gene expression;1.26170672325698e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31932127161345e-05!GO:0006606;protein import into nucleus;1.76182341272898e-05!GO:0050789;regulation of biological process;1.76980179210847e-05!GO:0007264;small GTPase mediated signal transduction;1.79879477328143e-05!GO:0005769;early endosome;1.88190604684055e-05!GO:0045333;cellular respiration;2.21023643157823e-05!GO:0003729;mRNA binding;2.25384990936842e-05!GO:0048471;perinuclear region of cytoplasm;2.38726261436399e-05!GO:0016363;nuclear matrix;2.5560848850299e-05!GO:0006099;tricarboxylic acid cycle;2.73096822020109e-05!GO:0046356;acetyl-CoA catabolic process;2.73096822020109e-05!GO:0035257;nuclear hormone receptor binding;2.75869359269289e-05!GO:0032774;RNA biosynthetic process;2.86504457733731e-05!GO:0005525;GTP binding;3.18869718124572e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.23387688802072e-05!GO:0015399;primary active transmembrane transporter activity;3.23387688802072e-05!GO:0006351;transcription, DNA-dependent;3.35792330450975e-05!GO:0000314;organellar small ribosomal subunit;3.59951842239514e-05!GO:0005763;mitochondrial small ribosomal subunit;3.59951842239514e-05!GO:0044440;endosomal part;3.59951842239514e-05!GO:0010008;endosome membrane;3.59951842239514e-05!GO:0000775;chromosome, pericentric region;3.77631715753124e-05!GO:0031982;vesicle;3.97833369343151e-05!GO:0005762;mitochondrial large ribosomal subunit;4.150656379381e-05!GO:0000315;organellar large ribosomal subunit;4.150656379381e-05!GO:0006084;acetyl-CoA metabolic process;4.31944663063936e-05!GO:0009117;nucleotide metabolic process;4.40725579328217e-05!GO:0031410;cytoplasmic vesicle;4.65339649301485e-05!GO:0051187;cofactor catabolic process;4.88680741547882e-05!GO:0000139;Golgi membrane;4.88680741547882e-05!GO:0008094;DNA-dependent ATPase activity;5.0247764598444e-05!GO:0003924;GTPase activity;5.18107401081312e-05!GO:0006613;cotranslational protein targeting to membrane;5.33167826313048e-05!GO:0048523;negative regulation of cellular process;6.26645401881546e-05!GO:0009109;coenzyme catabolic process;6.4383505100251e-05!GO:0015992;proton transport;7.10731500588129e-05!GO:0008168;methyltransferase activity;7.35278315592165e-05!GO:0008186;RNA-dependent ATPase activity;7.40142808440674e-05!GO:0031072;heat shock protein binding;7.44358687443224e-05!GO:0016741;transferase activity, transferring one-carbon groups;7.47808640056291e-05!GO:0006401;RNA catabolic process;8.39732978224926e-05!GO:0006818;hydrogen transport;8.86976997138727e-05!GO:0007051;spindle organization and biogenesis;9.07914371045483e-05!GO:0005874;microtubule;0.000109667562087836!GO:0008033;tRNA processing;0.000113308121210307!GO:0005657;replication fork;0.000118128151294893!GO:0005770;late endosome;0.000124860420206031!GO:0051329;interphase of mitotic cell cycle;0.000124883957501499!GO:0003899;DNA-directed RNA polymerase activity;0.00013291347921451!GO:0051246;regulation of protein metabolic process;0.000139054131918127!GO:0008287;protein serine/threonine phosphatase complex;0.000153132681200219!GO:0003690;double-stranded DNA binding;0.000167979232668975!GO:0003746;translation elongation factor activity;0.000174379594766476!GO:0043492;ATPase activity, coupled to movement of substances;0.000174379594766476!GO:0045449;regulation of transcription;0.000179694233239429!GO:0043021;ribonucleoprotein binding;0.000189511760440378!GO:0042802;identical protein binding;0.000213955721387818!GO:0019899;enzyme binding;0.000221513292330881!GO:0004004;ATP-dependent RNA helicase activity;0.000230509024120569!GO:0006839;mitochondrial transport;0.000230509024120569!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000263187898355776!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000270386723037693!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000276098073767915!GO:0000075;cell cycle checkpoint;0.000278382200223854!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000279655235453905!GO:0045786;negative regulation of progression through cell cycle;0.000293213173528032!GO:0008022;protein C-terminus binding;0.000353367101682304!GO:0032561;guanyl ribonucleotide binding;0.000354772512627547!GO:0019001;guanyl nucleotide binding;0.000354772512627547!GO:0045892;negative regulation of transcription, DNA-dependent;0.000359954680519495!GO:0035258;steroid hormone receptor binding;0.000409163113837657!GO:0003684;damaged DNA binding;0.00046263293616384!GO:0006383;transcription from RNA polymerase III promoter;0.000478419038106383!GO:0006414;translational elongation;0.000500067076225905!GO:0044452;nucleolar part;0.000500654016763552!GO:0046983;protein dimerization activity;0.000523656613429544!GO:0005048;signal sequence binding;0.000543867539447518!GO:0006916;anti-apoptosis;0.000550606209736408!GO:0003677;DNA binding;0.000609320084399592!GO:0043681;protein import into mitochondrion;0.000610389620775979!GO:0000786;nucleosome;0.000621044382833781!GO:0051325;interphase;0.000641482098079875!GO:0051252;regulation of RNA metabolic process;0.000671459350183899!GO:0006284;base-excision repair;0.000674359399981665!GO:0043069;negative regulation of programmed cell death;0.000700837908284975!GO:0043067;regulation of programmed cell death;0.000713009359202154!GO:0031252;leading edge;0.000722545557979053!GO:0005839;proteasome core complex (sensu Eukaryota);0.00073824917282813!GO:0051087;chaperone binding;0.000774183299688935!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000778297683821252!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000820531063984219!GO:0042981;regulation of apoptosis;0.000845043676790849!GO:0006405;RNA export from nucleus;0.000871759706382187!GO:0005885;Arp2/3 protein complex;0.000888603633149024!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000904903299750667!GO:0007017;microtubule-based process;0.00097461223238337!GO:0033116;ER-Golgi intermediate compartment membrane;0.00097461223238337!GO:0032508;DNA duplex unwinding;0.00104355037121379!GO:0032392;DNA geometric change;0.00104355037121379!GO:0009165;nucleotide biosynthetic process;0.00106483051713913!GO:0003678;DNA helicase activity;0.00111316162617132!GO:0008250;oligosaccharyl transferase complex;0.0011169267924625!GO:0006302;double-strand break repair;0.001148529668507!GO:0003711;transcription elongation regulator activity;0.00121593415852698!GO:0006355;regulation of transcription, DNA-dependent;0.00122243786049111!GO:0043414;biopolymer methylation;0.00126865833162292!GO:0048519;negative regulation of biological process;0.00128383121929439!GO:0051789;response to protein stimulus;0.00129182146612894!GO:0006986;response to unfolded protein;0.00129182146612894!GO:0045454;cell redox homeostasis;0.00130421443315611!GO:0006891;intra-Golgi vesicle-mediated transport;0.00131976472411272!GO:0004674;protein serine/threonine kinase activity;0.00133179230790544!GO:0043066;negative regulation of apoptosis;0.00140372161555215!GO:0005788;endoplasmic reticulum lumen;0.00140903995929298!GO:0000049;tRNA binding;0.00144259492123792!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00149402169276453!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00149402169276453!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00150218902900008!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00150218902900008!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00150218902900008!GO:0008654;phospholipid biosynthetic process;0.00153994027642382!GO:0030658;transport vesicle membrane;0.00163003567701332!GO:0030867;rough endoplasmic reticulum membrane;0.0016311582116249!GO:0051920;peroxiredoxin activity;0.00169835894248674!GO:0004298;threonine endopeptidase activity;0.00170037952160364!GO:0005773;vacuole;0.00175659806637939!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00175794275764011!GO:0022890;inorganic cation transmembrane transporter activity;0.00177132908763986!GO:0007010;cytoskeleton organization and biogenesis;0.00178097890882767!GO:0030118;clathrin coat;0.00178097890882767!GO:0004576;oligosaccharyl transferase activity;0.00179069305673284!GO:0006730;one-carbon compound metabolic process;0.00183415447193052!GO:0003702;RNA polymerase II transcription factor activity;0.00184225997109561!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00185372801410625!GO:0008139;nuclear localization sequence binding;0.00185372801410625!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00196773121172258!GO:0006268;DNA unwinding during replication;0.00197922669338476!GO:0000792;heterochromatin;0.00202250993415682!GO:0016853;isomerase activity;0.00215390898451875!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00215390898451875!GO:0000059;protein import into nucleus, docking;0.00219156701269331!GO:0030119;AP-type membrane coat adaptor complex;0.00221341996294207!GO:0019867;outer membrane;0.00239798588823519!GO:0045045;secretory pathway;0.00245734334583522!GO:0006338;chromatin remodeling;0.00246404305879992!GO:0032259;methylation;0.00246404305879992!GO:0031968;organelle outer membrane;0.00256446105411465!GO:0043488;regulation of mRNA stability;0.00266206333948538!GO:0043487;regulation of RNA stability;0.00266206333948538!GO:0016859;cis-trans isomerase activity;0.00275099027895214!GO:0005684;U2-dependent spliceosome;0.00275730258498676!GO:0007006;mitochondrial membrane organization and biogenesis;0.00279952689016378!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00281005138032272!GO:0016272;prefoldin complex;0.00286962327667937!GO:0000776;kinetochore;0.00315667270075477!GO:0030663;COPI coated vesicle membrane;0.0033030742979754!GO:0030126;COPI vesicle coat;0.0033030742979754!GO:0030660;Golgi-associated vesicle membrane;0.0033030742979754!GO:0015980;energy derivation by oxidation of organic compounds;0.00332887080817682!GO:0015631;tubulin binding;0.00352828755759924!GO:0006626;protein targeting to mitochondrion;0.00364766366804359!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00364838722511209!GO:0015002;heme-copper terminal oxidase activity;0.00364838722511209!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00364838722511209!GO:0004129;cytochrome-c oxidase activity;0.00364838722511209!GO:0006091;generation of precursor metabolites and energy;0.00373771750275007!GO:0016251;general RNA polymerase II transcription factor activity;0.00387032276742767!GO:0008276;protein methyltransferase activity;0.00387193036065044!GO:0030137;COPI-coated vesicle;0.00392088078743361!GO:0030131;clathrin adaptor complex;0.00405335380536642!GO:0030133;transport vesicle;0.00411414598982258!GO:0007265;Ras protein signal transduction;0.0041485282026691!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00421084101863908!GO:0005741;mitochondrial outer membrane;0.0043310603154847!GO:0007052;mitotic spindle organization and biogenesis;0.00471416024182385!GO:0000323;lytic vacuole;0.00472576669397622!GO:0005764;lysosome;0.00472576669397622!GO:0006352;transcription initiation;0.00473803652085851!GO:0048487;beta-tubulin binding;0.00485561839295614!GO:0004722;protein serine/threonine phosphatase activity;0.00494186252627853!GO:0048500;signal recognition particle;0.00508848075973754!GO:0016584;nucleosome positioning;0.00526336807742017!GO:0046483;heterocycle metabolic process;0.00529154225273537!GO:0047485;protein N-terminus binding;0.00546125340079053!GO:0016197;endosome transport;0.00589164383263858!GO:0000209;protein polyubiquitination;0.00614665761767382!GO:0051052;regulation of DNA metabolic process;0.00628690544805009!GO:0030880;RNA polymerase complex;0.00643697073352523!GO:0005669;transcription factor TFIID complex;0.00654755919385636!GO:0040029;regulation of gene expression, epigenetic;0.00657963153790772!GO:0019783;small conjugating protein-specific protease activity;0.00666220972174868!GO:0006612;protein targeting to membrane;0.00674205463033157!GO:0005637;nuclear inner membrane;0.00703829425328685!GO:0018196;peptidyl-asparagine modification;0.00713106901784998!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00713106901784998!GO:0005905;coated pit;0.00724667943170922!GO:0008601;protein phosphatase type 2A regulator activity;0.0073909596300077!GO:0030518;steroid hormone receptor signaling pathway;0.0073909596300077!GO:0006354;RNA elongation;0.00799193623787388!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00804128282835534!GO:0030384;phosphoinositide metabolic process;0.00807468805722358!GO:0006270;DNA replication initiation;0.00821022893751449!GO:0006376;mRNA splice site selection;0.0084831966762521!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0084831966762521!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00858364729486647!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00864849140970677!GO:0006607;NLS-bearing substrate import into nucleus;0.00865870304204379!GO:0004843;ubiquitin-specific protease activity;0.0087510260372331!GO:0006611;protein export from nucleus;0.00933936883118102!GO:0006672;ceramide metabolic process;0.00942094220942242!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00999479978569754!GO:0031124;mRNA 3'-end processing;0.010082720030562!GO:0016491;oxidoreductase activity;0.0101008622198869!GO:0006650;glycerophospholipid metabolic process;0.0101802137995852!GO:0043022;ribosome binding;0.0102978508699678!GO:0000123;histone acetyltransferase complex;0.0105411782110503!GO:0065007;biological regulation;0.0107590001865699!GO:0008017;microtubule binding;0.0111525773899886!GO:0008312;7S RNA binding;0.0113419501600215!GO:0008361;regulation of cell size;0.0113465946430087!GO:0031625;ubiquitin protein ligase binding;0.0120969297380132!GO:0065009;regulation of a molecular function;0.0121370233834716!GO:0030134;ER to Golgi transport vesicle;0.0122320615315616!GO:0000159;protein phosphatase type 2A complex;0.0122971212516607!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0123404487864433!GO:0009083;branched chain family amino acid catabolic process;0.0123569831693562!GO:0009081;branched chain family amino acid metabolic process;0.0126280854862304!GO:0031901;early endosome membrane;0.0126280854862304!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.013124597928607!GO:0045047;protein targeting to ER;0.013124597928607!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0133161501414952!GO:0000428;DNA-directed RNA polymerase complex;0.0133161501414952!GO:0006892;post-Golgi vesicle-mediated transport;0.0136900438544907!GO:0007059;chromosome segregation;0.0137637135836852!GO:0043284;biopolymer biosynthetic process;0.0138626676305848!GO:0046474;glycerophospholipid biosynthetic process;0.0139384291752321!GO:0005832;chaperonin-containing T-complex;0.0139722762027176!GO:0005795;Golgi stack;0.0140649166862075!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0142091468675241!GO:0016044;membrane organization and biogenesis;0.0142281397905905!GO:0005875;microtubule associated complex;0.0144628804658117!GO:0004003;ATP-dependent DNA helicase activity;0.014529110802705!GO:0000118;histone deacetylase complex;0.0145461406649005!GO:0043189;H4/H2A histone acetyltransferase complex;0.0150751810054227!GO:0004518;nuclease activity;0.0152694220017051!GO:0007050;cell cycle arrest;0.0152694220017051!GO:0004221;ubiquitin thiolesterase activity;0.0153534843696862!GO:0030176;integral to endoplasmic reticulum membrane;0.0154204203488634!GO:0016301;kinase activity;0.0155405843390201!GO:0046519;sphingoid metabolic process;0.0156014474819666!GO:0031628;opioid receptor binding;0.0156424183697962!GO:0031852;mu-type opioid receptor binding;0.0156424183697962!GO:0046489;phosphoinositide biosynthetic process;0.0157720903814344!GO:0030127;COPII vesicle coat;0.0157894816397417!GO:0012507;ER to Golgi transport vesicle membrane;0.0157894816397417!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0159905983228978!GO:0016126;sterol biosynthetic process;0.0160072377576965!GO:0006289;nucleotide-excision repair;0.0160985872061943!GO:0016049;cell growth;0.0170783490139111!GO:0005083;small GTPase regulator activity;0.0170877419071387!GO:0030132;clathrin coat of coated pit;0.0171609952368124!GO:0030027;lamellipodium;0.0171694021215304!GO:0006310;DNA recombination;0.0172882183349206!GO:0000228;nuclear chromosome;0.0173277919564588!GO:0006595;polyamine metabolic process;0.0175298397825455!GO:0016311;dephosphorylation;0.0179298723376289!GO:0051287;NAD binding;0.017953835425191!GO:0016790;thiolester hydrolase activity;0.0185115132962308!GO:0043596;nuclear replication fork;0.0186640673530053!GO:0001558;regulation of cell growth;0.0192405782880128!GO:0005869;dynactin complex;0.0195428361622683!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0195745584521959!GO:0031123;RNA 3'-end processing;0.0196711532800305!GO:0022415;viral reproductive process;0.0197607843301979!GO:0030659;cytoplasmic vesicle membrane;0.019815585008999!GO:0042770;DNA damage response, signal transduction;0.0202361647925997!GO:0008286;insulin receptor signaling pathway;0.0208879036972097!GO:0006406;mRNA export from nucleus;0.0212458551440822!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0221766144799816!GO:0031371;ubiquitin conjugating enzyme complex;0.0222143041938023!GO:0030036;actin cytoskeleton organization and biogenesis;0.022258794110851!GO:0050681;androgen receptor binding;0.0230178742799124!GO:0030521;androgen receptor signaling pathway;0.0232486151911381!GO:0006082;organic acid metabolic process;0.0243882702407369!GO:0016279;protein-lysine N-methyltransferase activity;0.0245024577683294!GO:0018024;histone-lysine N-methyltransferase activity;0.0245024577683294!GO:0016278;lysine N-methyltransferase activity;0.0245024577683294!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0246921073678485!GO:0035267;NuA4 histone acetyltransferase complex;0.0253424702973282!GO:0019752;carboxylic acid metabolic process;0.0253906950755362!GO:0042054;histone methyltransferase activity;0.0254232285663938!GO:0030911;TPR domain binding;0.0255128159062546!GO:0044433;cytoplasmic vesicle part;0.0255990001495488!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0261423460127646!GO:0004527;exonuclease activity;0.0269010260749492!GO:0030331;estrogen receptor binding;0.0276113933091188!GO:0032200;telomere organization and biogenesis;0.0277843045570404!GO:0000723;telomere maintenance;0.0277843045570404!GO:0000781;chromosome, telomeric region;0.0281244050548019!GO:0000287;magnesium ion binding;0.0284686999329177!GO:0004721;phosphoprotein phosphatase activity;0.0285206683798115!GO:0003756;protein disulfide isomerase activity;0.0288707559225777!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0288707559225777!GO:0006378;mRNA polyadenylation;0.0291734169309431!GO:0005791;rough endoplasmic reticulum;0.0296869935682495!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0301671787861469!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0303082889182513!GO:0000086;G2/M transition of mitotic cell cycle;0.0303552625061708!GO:0006520;amino acid metabolic process;0.0303629389313632!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0305530060855195!GO:0030125;clathrin vesicle coat;0.0305530060855195!GO:0030665;clathrin coated vesicle membrane;0.0305530060855195!GO:0007569;cell aging;0.0311021563984767!GO:0006769;nicotinamide metabolic process;0.0318576218828464!GO:0005876;spindle microtubule;0.0325466291700332!GO:0008180;signalosome;0.0332663571320698!GO:0008538;proteasome activator activity;0.0333716712631371!GO:0012506;vesicle membrane;0.0348654609634586!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0350701164531916!GO:0031902;late endosome membrane;0.0351769352218301!GO:0006695;cholesterol biosynthetic process;0.0353125716757235!GO:0019843;rRNA binding;0.0353692377205676!GO:0017166;vinculin binding;0.0369368404006014!GO:0030522;intracellular receptor-mediated signaling pathway;0.0374938374399383!GO:0008092;cytoskeletal protein binding;0.0374938374399383!GO:0042393;histone binding;0.0375630162483888!GO:0045941;positive regulation of transcription;0.0380957058872546!GO:0009451;RNA modification;0.0381463510280832!GO:0000339;RNA cap binding;0.0385383481796696!GO:0050178;phenylpyruvate tautomerase activity;0.0389189164019292!GO:0000922;spindle pole;0.0394519588199266!GO:0005784;translocon complex;0.0394662461446415!GO:0009303;rRNA transcription;0.0394662461446415!GO:0006740;NADPH regeneration;0.0394706898471282!GO:0006098;pentose-phosphate shunt;0.0394706898471282!GO:0030508;thiol-disulfide exchange intermediate activity;0.0396003433605817!GO:0050662;coenzyme binding;0.0397599194225148!GO:0043624;cellular protein complex disassembly;0.04007800599227!GO:0035303;regulation of dephosphorylation;0.0401357669027869!GO:0031570;DNA integrity checkpoint;0.040475754556627!GO:0006275;regulation of DNA replication;0.0422334537058138!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0424458609575013!GO:0051098;regulation of binding;0.0424458609575013!GO:0007021;tubulin folding;0.0433548886475941!GO:0046467;membrane lipid biosynthetic process;0.0434670488405174!GO:0006984;ER-nuclear signaling pathway;0.0439712928906083!GO:0031365;N-terminal protein amino acid modification;0.044340327815127!GO:0000082;G1/S transition of mitotic cell cycle;0.0443788267112463!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0445950034572983!GO:0005938;cell cortex;0.0452634636733165!GO:0000096;sulfur amino acid metabolic process;0.0452897211204251!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0452897211204251!GO:0005665;DNA-directed RNA polymerase II, core complex;0.045620231459764!GO:0044454;nuclear chromosome part;0.0471539566871845!GO:0007093;mitotic cell cycle checkpoint;0.0473416410888071!GO:0008637;apoptotic mitochondrial changes;0.0474459287374773!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0474459287374773!GO:0042421;norepinephrine biosynthetic process;0.0481594884390606!GO:0042415;norepinephrine metabolic process;0.0481594884390606!GO:0007088;regulation of mitosis;0.0482048724478698!GO:0008632;apoptotic program;0.0482562180296657!GO:0007266;Rho protein signal transduction;0.0485060450031441!GO:0006144;purine base metabolic process;0.0485720157505875!GO:0006733;oxidoreduction coenzyme metabolic process;0.0488807421369792!GO:0015036;disulfide oxidoreductase activity;0.0494879947353104!GO:0035259;glucocorticoid receptor binding;0.04966143579288!GO:0007004;telomere maintenance via telomerase;0.049896027759808
 
|sample_id=10482
 
|sample_id=10482
 
|sample_note=
 
|sample_note=
Line 76: Line 98:
 
|sample_tissue=breast
 
|sample_tissue=breast
 
|top_motifs=ZEB1:1.94530569429;SNAI1..3:1.79387446749;PPARG:1.75049916426;HOX{A6,A7,B6,B7}:1.62641092231;PITX1..3:1.58663748825;FOX{F1,F2,J1}:1.52547179405;MYOD1:1.38860345341;FOXQ1:1.36603501123;HOXA9_MEIS1:1.18224005831;bHLH_family:1.16360746363;VSX1,2:1.16086570841;CDX1,2,4:1.10120525819;ARID5B:1.08421565053;ZBTB16:1.03843233621;TFDP1:1.03153923861;BREu{core}:1.02785912572;IKZF2:1.02046189279;LMO2:1.00895336867;NKX6-1,2:0.884913128761;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.868125095064;DBP:0.863669140665;FOXD3:0.855256946596;NFY{A,B,C}:0.818447112663;PBX1:0.76564437537;STAT5{A,B}:0.742616538836;RBPJ:0.717580111779;POU2F1..3:0.704276253846;TFAP2B:0.70097325677;LHX3,4:0.68207950007;FOXN1:0.65620579224;ONECUT1,2:0.644802917227;ESRRA:0.641975972217;MED-1{core}:0.62554764785;ELK1,4_GABP{A,B1}:0.614116979685;XCPE1{core}:0.5849641732;EVI1:0.569386248029;NRF1:0.562385119575;GFI1:0.552174715489;EGR1..3:0.522419774137;PAX6:0.513523321324;MTF1:0.496702783142;FOXL1:0.477319017579;FOXP1:0.473177627347;ALX1:0.460017363683;TFAP2{A,C}:0.450214666135;ATF2:0.440013084364;SP1:0.377070356998;OCT4_SOX2{dimer}:0.360013784981;RFX2..5_RFXANK_RFXAP:0.359381535954;SREBF1,2:0.324042880734;E2F1..5:0.317646800285;HOX{A4,D4}:0.307093230241;ZFP161:0.260663111956;BPTF:0.23548090511;HIF1A:0.234446460486;TOPORS:0.22324545972;NR6A1:0.220507860669;FOX{D1,D2}:0.213561878562;HOX{A5,B5}:0.166653078917;HNF1A:0.16247189812;POU5F1:0.152341785116;POU3F1..4:0.141610067412;RFX1:0.13720888843;POU1F1:0.124604382893;LEF1_TCF7_TCF7L1,2:0.111306457636;FOX{I1,J2}:0.106773297945;PAX2:0.0985727717227;AIRE:0.0974413364899;ZNF143:0.0859922257361;ADNP_IRX_SIX_ZHX:0.0830077831088;POU6F1:0.0665631157914;IKZF1:0.0663767373737;FOXA2:0.0602400049004;TEAD1:0.0335780603122;HIC1:0.0237241855789;RORA:0.00202547195144;NR5A1,2:-0.0104032459783;PAX8:-0.0141606694597;CDC5L:-0.0151768870525;NANOG:-0.0173029047532;NR1H4:-0.0216187478428;UFEwm:-0.0311593253788;AHR_ARNT_ARNT2:-0.0498753385672;MYB:-0.0626413196368;TBX4,5:-0.0840797000396;FOXO1,3,4:-0.0855959786293;SOX5:-0.120349307195;REST:-0.137794535486;NFIX:-0.14777070608;FOS_FOS{B,L1}_JUN{B,D}:-0.156368948674;STAT1,3:-0.157369023784;ZIC1..3:-0.173245041716;NKX2-3_NKX2-5:-0.175116280174;ATF5_CREB3:-0.17835499965;ZNF148:-0.181518778846;ATF4:-0.183109814009;HLF:-0.199126642751;TLX2:-0.217624087351;MTE{core}:-0.219916454601;YY1:-0.222237500434;FOSL2:-0.222728623734;PRRX1,2:-0.225586828666;ATF6:-0.245903624324;FOXP3:-0.260934705812;ESR1:-0.267916915058;TEF:-0.282071427943;CEBPA,B_DDIT3:-0.295675947707;SOX{8,9,10}:-0.298475034375;CUX2:-0.309093844768;HNF4A_NR2F1,2:-0.312410666659;NFE2:-0.32002983898;PAX4:-0.340820010789;MEF2{A,B,C,D}:-0.352169098738;TP53:-0.354273943139;HMGA1,2:-0.372043501134;NFIL3:-0.374438606275;XBP1:-0.375314854051;TAL1_TCF{3,4,12}:-0.379522248931;NKX2-1,4:-0.380553148479;NHLH1,2:-0.383330155806;BACH2:-0.383704196061;GATA6:-0.392822282293;HSF1,2:-0.399631108206;GTF2I:-0.40010881681;NFE2L1:-0.413107626525;SOX2:-0.433631972961;PAX1,9:-0.440777289235;TFCP2:-0.477945880084;ZBTB6:-0.488082157796;TFAP4:-0.493717729267;MZF1:-0.503026422683;MYFfamily:-0.505829876212;GZF1:-0.529438776941;TLX1..3_NFIC{dimer}:-0.549973328914;FOXM1:-0.551140288834;PATZ1:-0.565762833112;GATA4:-0.571876315066;RUNX1..3:-0.585088665719;HBP1_HMGB_SSRP1_UBTF:-0.602286481012;NFKB1_REL_RELA:-0.609998963998;JUN:-0.621537122641;ELF1,2,4:-0.625232391249;MAZ:-0.637509084137;SRF:-0.667438976517;SPI1:-0.669589595779;STAT2,4,6:-0.671445565866;AR:-0.682077403944;PAX5:-0.684263330179;SPIB:-0.689439475365;RREB1:-0.692250040972;NFE2L2:-0.704463285964;KLF4:-0.735570074834;NKX2-2,8:-0.749172144666;NKX3-1:-0.757066875751;CRX:-0.791654611979;ZNF423:-0.793752444374;EN1,2:-0.795169378093;HES1:-0.79971355384;TBP:-0.809879572828;RXRA_VDR{dimer}:-0.821204271984;ZNF384:-0.844311519495;CREB1:-0.850665457596;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.85245714345;PAX3,7:-0.862610446306;GTF2A1,2:-0.86889967162;MAFB:-0.888567797089;ETS1,2:-0.900398901708;T:-0.987395176846;GFI1B:-0.989265025875;PRDM1:-0.99966407217;SOX17:-1.00444408795;HMX1:-1.00772773915;ALX4:-1.01544973495;NKX3-2:-1.02107413766;DMAP1_NCOR{1,2}_SMARC:-1.03260770241;TGIF1:-1.03343486607;IRF7:-1.03398169183;NFATC1..3:-1.07166018194;NANOG{mouse}:-1.12738985598;NR3C1:-1.15927023313;IRF1,2:-1.16289140673;PDX1:-1.17514176237;EP300:-1.22972176315;EBF1:-1.24305282044;HAND1,2:-1.27034902989;MYBL2:-1.32218043373;GCM1,2:-1.49987383465;ZNF238:-1.57784825811;GLI1..3:-1.67022481177;RXR{A,B,G}:-1.72701308413;SPZ1:-1.83433604395;SMAD1..7,9:-1.84617153595
 
|top_motifs=ZEB1:1.94530569429;SNAI1..3:1.79387446749;PPARG:1.75049916426;HOX{A6,A7,B6,B7}:1.62641092231;PITX1..3:1.58663748825;FOX{F1,F2,J1}:1.52547179405;MYOD1:1.38860345341;FOXQ1:1.36603501123;HOXA9_MEIS1:1.18224005831;bHLH_family:1.16360746363;VSX1,2:1.16086570841;CDX1,2,4:1.10120525819;ARID5B:1.08421565053;ZBTB16:1.03843233621;TFDP1:1.03153923861;BREu{core}:1.02785912572;IKZF2:1.02046189279;LMO2:1.00895336867;NKX6-1,2:0.884913128761;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.868125095064;DBP:0.863669140665;FOXD3:0.855256946596;NFY{A,B,C}:0.818447112663;PBX1:0.76564437537;STAT5{A,B}:0.742616538836;RBPJ:0.717580111779;POU2F1..3:0.704276253846;TFAP2B:0.70097325677;LHX3,4:0.68207950007;FOXN1:0.65620579224;ONECUT1,2:0.644802917227;ESRRA:0.641975972217;MED-1{core}:0.62554764785;ELK1,4_GABP{A,B1}:0.614116979685;XCPE1{core}:0.5849641732;EVI1:0.569386248029;NRF1:0.562385119575;GFI1:0.552174715489;EGR1..3:0.522419774137;PAX6:0.513523321324;MTF1:0.496702783142;FOXL1:0.477319017579;FOXP1:0.473177627347;ALX1:0.460017363683;TFAP2{A,C}:0.450214666135;ATF2:0.440013084364;SP1:0.377070356998;OCT4_SOX2{dimer}:0.360013784981;RFX2..5_RFXANK_RFXAP:0.359381535954;SREBF1,2:0.324042880734;E2F1..5:0.317646800285;HOX{A4,D4}:0.307093230241;ZFP161:0.260663111956;BPTF:0.23548090511;HIF1A:0.234446460486;TOPORS:0.22324545972;NR6A1:0.220507860669;FOX{D1,D2}:0.213561878562;HOX{A5,B5}:0.166653078917;HNF1A:0.16247189812;POU5F1:0.152341785116;POU3F1..4:0.141610067412;RFX1:0.13720888843;POU1F1:0.124604382893;LEF1_TCF7_TCF7L1,2:0.111306457636;FOX{I1,J2}:0.106773297945;PAX2:0.0985727717227;AIRE:0.0974413364899;ZNF143:0.0859922257361;ADNP_IRX_SIX_ZHX:0.0830077831088;POU6F1:0.0665631157914;IKZF1:0.0663767373737;FOXA2:0.0602400049004;TEAD1:0.0335780603122;HIC1:0.0237241855789;RORA:0.00202547195144;NR5A1,2:-0.0104032459783;PAX8:-0.0141606694597;CDC5L:-0.0151768870525;NANOG:-0.0173029047532;NR1H4:-0.0216187478428;UFEwm:-0.0311593253788;AHR_ARNT_ARNT2:-0.0498753385672;MYB:-0.0626413196368;TBX4,5:-0.0840797000396;FOXO1,3,4:-0.0855959786293;SOX5:-0.120349307195;REST:-0.137794535486;NFIX:-0.14777070608;FOS_FOS{B,L1}_JUN{B,D}:-0.156368948674;STAT1,3:-0.157369023784;ZIC1..3:-0.173245041716;NKX2-3_NKX2-5:-0.175116280174;ATF5_CREB3:-0.17835499965;ZNF148:-0.181518778846;ATF4:-0.183109814009;HLF:-0.199126642751;TLX2:-0.217624087351;MTE{core}:-0.219916454601;YY1:-0.222237500434;FOSL2:-0.222728623734;PRRX1,2:-0.225586828666;ATF6:-0.245903624324;FOXP3:-0.260934705812;ESR1:-0.267916915058;TEF:-0.282071427943;CEBPA,B_DDIT3:-0.295675947707;SOX{8,9,10}:-0.298475034375;CUX2:-0.309093844768;HNF4A_NR2F1,2:-0.312410666659;NFE2:-0.32002983898;PAX4:-0.340820010789;MEF2{A,B,C,D}:-0.352169098738;TP53:-0.354273943139;HMGA1,2:-0.372043501134;NFIL3:-0.374438606275;XBP1:-0.375314854051;TAL1_TCF{3,4,12}:-0.379522248931;NKX2-1,4:-0.380553148479;NHLH1,2:-0.383330155806;BACH2:-0.383704196061;GATA6:-0.392822282293;HSF1,2:-0.399631108206;GTF2I:-0.40010881681;NFE2L1:-0.413107626525;SOX2:-0.433631972961;PAX1,9:-0.440777289235;TFCP2:-0.477945880084;ZBTB6:-0.488082157796;TFAP4:-0.493717729267;MZF1:-0.503026422683;MYFfamily:-0.505829876212;GZF1:-0.529438776941;TLX1..3_NFIC{dimer}:-0.549973328914;FOXM1:-0.551140288834;PATZ1:-0.565762833112;GATA4:-0.571876315066;RUNX1..3:-0.585088665719;HBP1_HMGB_SSRP1_UBTF:-0.602286481012;NFKB1_REL_RELA:-0.609998963998;JUN:-0.621537122641;ELF1,2,4:-0.625232391249;MAZ:-0.637509084137;SRF:-0.667438976517;SPI1:-0.669589595779;STAT2,4,6:-0.671445565866;AR:-0.682077403944;PAX5:-0.684263330179;SPIB:-0.689439475365;RREB1:-0.692250040972;NFE2L2:-0.704463285964;KLF4:-0.735570074834;NKX2-2,8:-0.749172144666;NKX3-1:-0.757066875751;CRX:-0.791654611979;ZNF423:-0.793752444374;EN1,2:-0.795169378093;HES1:-0.79971355384;TBP:-0.809879572828;RXRA_VDR{dimer}:-0.821204271984;ZNF384:-0.844311519495;CREB1:-0.850665457596;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.85245714345;PAX3,7:-0.862610446306;GTF2A1,2:-0.86889967162;MAFB:-0.888567797089;ETS1,2:-0.900398901708;T:-0.987395176846;GFI1B:-0.989265025875;PRDM1:-0.99966407217;SOX17:-1.00444408795;HMX1:-1.00772773915;ALX4:-1.01544973495;NKX3-2:-1.02107413766;DMAP1_NCOR{1,2}_SMARC:-1.03260770241;TGIF1:-1.03343486607;IRF7:-1.03398169183;NFATC1..3:-1.07166018194;NANOG{mouse}:-1.12738985598;NR3C1:-1.15927023313;IRF1,2:-1.16289140673;PDX1:-1.17514176237;EP300:-1.22972176315;EBF1:-1.24305282044;HAND1,2:-1.27034902989;MYBL2:-1.32218043373;GCM1,2:-1.49987383465;ZNF238:-1.57784825811;GLI1..3:-1.67022481177;RXR{A,B,G}:-1.72701308413;SPZ1:-1.83433604395;SMAD1..7,9:-1.84617153595
 +
|xref=
 
}}
 
}}

Latest revision as of 10:24, 10 August 2017

Name:breast carcinoma cell line:MCF7
Species:Human (Homo sapiens)
Library ID:CNhs11943
Sample type:cell lines
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
RefEX:Specific genes
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebreast
dev stageNA
sexfemale
age69
cell typeunclassifiable
cell lineMCF7
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005638
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11943 CAGE DRX007837 DRR008709
Accession ID Hg19

Library idBAMCTSS
CNhs11943 DRZ000134 DRZ001519
Accession ID Hg38

Library idBAMCTSS
CNhs11943 DRZ011484 DRZ012869
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.127
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.205
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0585
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.292
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.615
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.521
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.497
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.108
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.19
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms1.203
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.182
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.283
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.251
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11943

Jaspar motif P-value
MA0002.2 0.00977
MA0003.1 0.252
MA0004.1 0.0111
MA0006.1 0.871
MA0007.1 0.81
MA0009.1 0.876
MA0014.1 0.223
MA0017.1 0.0544
MA0018.2 0.775
MA0019.1 0.267
MA0024.1 0.00553
MA0025.1 0.919
MA0027.1 0.953
MA0028.1 0.181
MA0029.1 0.332
MA0030.1 0.162
MA0031.1 0.422
MA0035.2 0.914
MA0038.1 0.0186
MA0039.2 0.352
MA0040.1 0.259
MA0041.1 0.506
MA0042.1 0.615
MA0043.1 0.251
MA0046.1 0.313
MA0047.2 0.00838
MA0048.1 0.816
MA0050.1 6.33121e-12
MA0051.1 1.70307e-6
MA0052.1 0.0117
MA0055.1 0.436
MA0057.1 0.659
MA0058.1 0.0232
MA0059.1 0.313
MA0060.1 1.43175e-7
MA0061.1 8.60468e-5
MA0062.2 0.292
MA0065.2 0.321
MA0066.1 0.337
MA0067.1 0.269
MA0068.1 0.822
MA0069.1 0.825
MA0070.1 0.861
MA0071.1 0.394
MA0072.1 0.822
MA0073.1 0.938
MA0074.1 0.917
MA0076.1 0.0347
MA0077.1 0.945
MA0078.1 0.279
MA0079.2 0.44
MA0080.2 5.52519e-10
MA0081.1 0.0126
MA0083.1 0.0128
MA0084.1 0.528
MA0087.1 0.833
MA0088.1 0.295
MA0090.1 0.674
MA0091.1 0.0521
MA0092.1 0.273
MA0093.1 0.0165
MA0099.2 1.01243e-6
MA0100.1 0.75
MA0101.1 0.00401
MA0102.2 0.0142
MA0103.1 5.93851e-7
MA0104.2 0.296
MA0105.1 1.08241e-5
MA0106.1 0.366
MA0107.1 1.80688e-4
MA0108.2 0.00894
MA0111.1 0.658
MA0112.2 0.133
MA0113.1 0.361
MA0114.1 0.334
MA0115.1 0.849
MA0116.1 0.00175
MA0117.1 0.423
MA0119.1 0.472
MA0122.1 0.835
MA0124.1 0.311
MA0125.1 0.0682
MA0131.1 0.154
MA0135.1 0.244
MA0136.1 2.43013e-7
MA0137.2 0.0618
MA0138.2 0.21
MA0139.1 0.562
MA0140.1 0.915
MA0141.1 0.527
MA0142.1 0.237
MA0143.1 0.52
MA0144.1 0.0726
MA0145.1 0.689
MA0146.1 0.895
MA0147.1 0.257
MA0148.1 0.0573
MA0149.1 0.286
MA0150.1 0.00127
MA0152.1 0.861
MA0153.1 0.673
MA0154.1 0.00957
MA0155.1 0.0993
MA0156.1 2.83618e-4
MA0157.1 0.961
MA0159.1 0.648
MA0160.1 0.693
MA0162.1 0.164
MA0163.1 4.09401e-5
MA0164.1 0.401
MA0258.1 0.761
MA0259.1 0.106



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11943

Novel motif P-value
1 0.73
10 0.497
100 0.946
101 0.35
102 0.482
103 0.113
104 0.485
105 0.0744
106 0.09
107 0.438
108 0.524
109 0.883
11 0.296
110 0.627
111 0.802
112 0.511
113 0.173
114 0.153
115 0.31
116 0.259
117 0.708
118 0.252
119 0.506
12 0.403
120 0.861
121 0.225
122 0.284
123 0.136
124 0.0875
125 0.613
126 0.759
127 0.984
128 0.217
129 0.524
13 0.745
130 0.485
131 0.228
132 0.958
133 0.00212
134 0.382
135 0.232
136 0.0213
137 0.152
138 0.308
139 0.864
14 0.891
140 0.705
141 0.15
142 0.608
143 0.00982
144 0.558
145 0.43
146 0.183
147 0.941
148 0.075
149 0.108
15 0.752
150 0.815
151 0.234
152 0.334
153 0.797
154 0.869
155 0.166
156 0.896
157 0.497
158 0.426
159 0.685
16 0.336
160 0.318
161 0.356
162 0.302
163 0.618
164 0.866
165 0.789
166 0.23
167 0.34
168 0.0386
169 0.207
17 0.761
18 0.215
19 0.143
2 0.435
20 0.313
21 0.817
22 0.135
23 0.0267
24 0.606
25 0.777
26 0.323
27 0.412
28 0.738
29 0.982
3 0.0542
30 0.946
31 0.584
32 0.0385
33 0.588
34 0.101
35 0.448
36 0.0334
37 0.0619
38 0.596
39 0.238
4 0.423
40 0.38
41 0.00464
42 0.197
43 0.0678
44 0.905
45 0.675
46 0.568
47 0.692
48 0.987
49 0.253
5 0.259
50 0.33
51 0.798
52 0.726
53 0.747
54 0.756
55 0.677
56 0.302
57 0.443
58 0.264
59 0.0772
6 0.893
60 0.0545
61 0.807
62 0.0839
63 0.281
64 0.7
65 0.0549
66 0.0247
67 0.187
68 0.442
69 0.685
7 0.383
70 0.319
71 0.107
72 0.35
73 0.23
74 0.269
75 0.504
76 0.353
77 0.0407
78 0.416
79 0.141
8 0.665
80 0.00336
81 0.151
82 0.343
83 0.544
84 0.74
85 0.517
86 0.342
87 0.102
88 0.213
89 0.037
9 0.00612
90 0.233
91 0.145
92 0.536
93 0.0607
94 0.737
95 0.695
96 0.0628
97 0.842
98 0.703
99 0.827



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11943


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
299 (adenocarcinoma)
1612 (breast cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100093 (MCF-7 cell sample)
0100297 (carcinoma cell line sample)
0101912 (breast adenocarcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0100167 (adenocarcinoma cell line sample)
0100356 (breast cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA