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MCL coexpression mm9:3041: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002113!5.14e-20!14;UBERON:0003918!5.14e-20!14;UBERON:0011143!5.14e-20!14;UBERON:0005095!5.14e-20!14;UBERON:0007687!5.14e-20!14;UBERON:0001008!1.12e-18!19;UBERON:0006554!4.11e-17!18;UBERON:0005178!3.93e-15!17;UBERON:0005181!3.93e-15!17;UBERON:0002224!3.93e-15!17;UBERON:0000915!3.93e-15!17;UBERON:0008947!3.93e-15!17;UBERON:0003258!3.93e-15!17;UBERON:0005153!5.41e-15!17;UBERON:0005157!2.94e-12!20;UBERON:0009569!3.14e-12!66;UBERON:0000489!3.25e-12!21;UBERON:0002048!1.50e-10!14;UBERON:0000117!1.50e-10!14;UBERON:0000171!1.50e-10!14;UBERON:0000170!1.50e-10!14;UBERON:0005597!1.50e-10!14;UBERON:0000118!1.50e-10!14;UBERON:0005177!4.48e-10!79;UBERON:0002100!8.93e-10!90;UBERON:0004175!4.41e-09!9;UBERON:0003103!1.88e-08!43;UBERON:0003100!5.15e-08!11;UBERON:0000080!9.16e-07!4;UBERON:0005904!9.16e-07!4;UBERON:0006947!9.16e-07!4;UBERON:0002120!9.16e-07!4;UBERON:0004054!9.16e-07!4;UBERON:0004875!9.16e-07!4;UBERON:0004876!9.16e-07!4;UBERON:0005721!9.16e-07!4;UBERON:0005754!9.16e-07!4;UBERON:0007297!9.16e-07!4
}}
}}

Revision as of 19:26, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:32794761..32794774,-p@chr16:32794761..32794774
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Mm9::chr16:32797458..32797463,-p@chr16:32797458..32797463
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Mm9::chr16:32797499..32797547,-p1@Muc20


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
kidney5.14e-2014
kidney mesenchyme5.14e-2014
upper urinary tract5.14e-2014
kidney rudiment5.14e-2014
kidney field5.14e-2014
renal system1.12e-1819
urinary system structure4.11e-1718
thoracic cavity element3.93e-1517
thoracic segment organ3.93e-1517
thoracic cavity3.93e-1517
thoracic segment of trunk3.93e-1517
respiratory primordium3.93e-1517
endoderm of foregut3.93e-1517
epithelial bud5.41e-1517
epithelial fold2.94e-1220
subdivision of trunk3.14e-1266
cavitated compound organ3.25e-1221
lung1.50e-1014
respiratory tube1.50e-1014
respiration organ1.50e-1014
pair of lungs1.50e-1014
lung primordium1.50e-1014
lung bud1.50e-1014
trunk region element4.48e-1079
trunk8.93e-1090
internal genitalia4.41e-099
compound organ1.88e-0843
female organism5.15e-0811
mesonephros9.16e-074
duct of male reproductive system9.16e-074
male genital duct9.16e-074
pronephros9.16e-074
internal male genitalia9.16e-074
nephrogenic cord9.16e-074
urogenital ridge9.16e-074
pronephric mesoderm9.16e-074
rostral part of nephrogenic cord9.16e-074
presumptive pronephric mesoderm9.16e-074


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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