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MCL coexpression mm9:3405: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002021!2.26e-19!10;UBERON:0000411!2.26e-19!10;UBERON:0001950!2.26e-19!10;UBERON:0002619!1.59e-14!17;UBERON:0003056!2.08e-14!49;UBERON:0002346!4.64e-14!64;UBERON:0003075!4.64e-14!64;UBERON:0007284!4.64e-14!64;UBERON:0000956!3.25e-13!21;UBERON:0001869!3.25e-13!21;UBERON:0000203!3.25e-13!21;UBERON:0010371!1.88e-11!73;UBERON:0000073!6.42e-11!54;UBERON:0001049!1.79e-10!52;UBERON:0005068!1.79e-10!52;UBERON:0006241!1.79e-10!52;UBERON:0007135!1.79e-10!52;UBERON:0002616!4.98e-10!46;UBERON:0003528!5.19e-10!29;UBERON:0002791!5.19e-10!29;UBERON:0001893!5.19e-10!29;UBERON:0000955!1.04e-09!47;UBERON:0006238!1.04e-09!47;UBERON:0003080!1.06e-09!40;UBERON:0002020!3.27e-09!34;UBERON:0004121!9.39e-09!95;UBERON:0000924!9.39e-09!95;UBERON:0006601!9.39e-09!95;UBERON:0002780!9.70e-09!39;UBERON:0001890!9.70e-09!39;UBERON:0006240!9.70e-09!39;UBERON:0010314!1.11e-07!92;UBERON:0001017!1.78e-07!73;UBERON:0001016!3.97e-07!75
}}
}}

Revision as of 20:00, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:29139344..29139347,+p@chr3:29139344..29139347
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Mm9::chr3:29213647..29213656,+p@chr3:29213647..29213656
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Mm9::chr3:29366821..29366826,+p@chr3:29366821..29366826
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
occipital lobe2.26e-1910
visual cortex2.26e-1910
neocortex2.26e-1910
regional part of cerebral cortex1.59e-1417
pre-chordal neural plate2.08e-1449
neurectoderm4.64e-1464
neural plate4.64e-1464
presumptive neural plate4.64e-1464
cerebral cortex3.25e-1321
cerebral hemisphere3.25e-1321
pallium3.25e-1321
ecto-epithelium1.88e-1173
regional part of nervous system6.42e-1154
neural tube1.79e-1052
neural rod1.79e-1052
future spinal cord1.79e-1052
neural keel1.79e-1052
regional part of brain4.98e-1046
brain grey matter5.19e-1029
regional part of telencephalon5.19e-1029
telencephalon5.19e-1029
brain1.04e-0947
future brain1.04e-0947
anterior neural tube1.06e-0940
gray matter3.27e-0934
ectoderm-derived structure9.39e-0995
ectoderm9.39e-0995
presumptive ectoderm9.39e-0995
regional part of forebrain9.70e-0939
forebrain9.70e-0939
future forebrain9.70e-0939
structure with developmental contribution from neural crest1.11e-0792
central nervous system1.78e-0773
nervous system3.97e-0775


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}