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MCL coexpression mm9:3617: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000055!2.42e-10!49;CL:0000333!3.42e-08!10;CL:0000095!3.42e-08!10;CL:0000243!3.42e-08!10;CL:0000123!3.42e-08!10;CL:0000125!3.42e-08!10;CL:0000030!3.42e-08!10;CL:0000339!3.42e-08!10;CL:0000221!9.35e-08!44;CL:0000133!9.35e-08!44;CL:0002319!1.48e-07!43;CL:0002453!6.55e-07!8
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004121!9.95e-17!95;UBERON:0000924!9.95e-17!95;UBERON:0006601!9.95e-17!95;UBERON:0001016!4.29e-14!75;UBERON:0001017!5.78e-13!73;UBERON:0010371!4.19e-12!73;UBERON:0000073!7.41e-11!54;UBERON:0001049!2.72e-10!52;UBERON:0005068!2.72e-10!52;UBERON:0006241!2.72e-10!52;UBERON:0007135!2.72e-10!52;UBERON:0002346!5.35e-10!64;UBERON:0003075!5.35e-10!64;UBERON:0007284!5.35e-10!64;UBERON:0010314!3.86e-09!92;UBERON:0004176!9.40e-09!17;UBERON:0009196!9.40e-09!17;UBERON:0009117!9.40e-09!17;UBERON:0000991!1.43e-08!18;UBERON:0005564!1.43e-08!18;UBERON:0000955!1.47e-08!47;UBERON:0006238!1.47e-08!47;UBERON:0002616!2.00e-08!46;UBERON:0003135!1.84e-07!15;UBERON:0000473!2.25e-07!14;UBERON:0003101!3.24e-07!16;UBERON:0000079!3.24e-07!16;UBERON:0005156!4.33e-07!26;UBERON:0000990!4.33e-07!26;UBERON:0004111!5.54e-07!122;UBERON:0003133!8.23e-07!24
}}
}}

Revision as of 20:21, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr7:26573512..26573532,-p2@Axl
Mm9::chr7:26573533..26573544,-p4@Axl
Mm9::chr7:26573552..26573573,-p3@Axl


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
ectoderm-derived structure9.95e-1795
ectoderm9.95e-1795
presumptive ectoderm9.95e-1795
nervous system4.29e-1475
central nervous system5.78e-1373
ecto-epithelium4.19e-1273
regional part of nervous system7.41e-1154
neural tube2.72e-1052
neural rod2.72e-1052
future spinal cord2.72e-1052
neural keel2.72e-1052
neurectoderm5.35e-1064
neural plate5.35e-1064
presumptive neural plate5.35e-1064
structure with developmental contribution from neural crest3.86e-0992
external genitalia9.40e-0917
indifferent external genitalia9.40e-0917
indifferent gonad9.40e-0917
gonad1.43e-0818
gonad primordium1.43e-0818
brain1.47e-0847
future brain1.47e-0847
regional part of brain2.00e-0846
male reproductive organ1.84e-0715
testis2.25e-0714
male organism3.24e-0716
male reproductive system3.24e-0716
reproductive structure4.33e-0726
reproductive system4.33e-0726
anatomical conduit5.54e-07122
reproductive organ8.23e-0724


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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