FFCP PHASE1:Mm9::chr9:60535872..60535889,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|id=chr9:60535872..60535889,- | |id=chr9:60535872..60535889,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.49e-12!102;UBERON:0000924!4.49e-12!102;UBERON:0006601!4.49e-12!102;UBERON:0000033!2.91e-10!63;UBERON:0003056!5.75e-10!49;UBERON:0002346!1.49e-09!71;UBERON:0003075!1.49e-09!71;UBERON:0007284!1.49e-09!71;UBERON:0001017!1.99e-08!73;UBERON:0005743!1.99e-08!73;UBERON:0000955!6.77e-08!50;UBERON:0006238!6.77e-08!50;UBERON:0000073!8.38e-08!75;UBERON:0001016!8.38e-08!75;UBERON:0003080!9.99e-08!40;UBERON:0001049!1.44e-07!52;UBERON:0005068!1.44e-07!52;UBERON:0006241!1.44e-07!52;UBERON:0007135!1.44e-07!52;UBERON:0002616!1.55e-07!49;UBERON:0002780!1.97e-07!39;UBERON:0001890!1.97e-07!39;UBERON:0006240!1.97e-07!39;UBERON:0000468!3.84e-07!333;UBERON:0002021!4.89e-07!10;UBERON:0000411!4.89e-07!10;UBERON:0001950!4.89e-07!10 | |ontology_enrichment_uberon=UBERON:0004121!4.49e-12!102;UBERON:0000924!4.49e-12!102;UBERON:0006601!4.49e-12!102;UBERON:0000033!2.91e-10!63;UBERON:0003056!5.75e-10!49;UBERON:0002346!1.49e-09!71;UBERON:0003075!1.49e-09!71;UBERON:0007284!1.49e-09!71;UBERON:0001017!1.99e-08!73;UBERON:0005743!1.99e-08!73;UBERON:0000955!6.77e-08!50;UBERON:0006238!6.77e-08!50;UBERON:0000073!8.38e-08!75;UBERON:0001016!8.38e-08!75;UBERON:0003080!9.99e-08!40;UBERON:0001049!1.44e-07!52;UBERON:0005068!1.44e-07!52;UBERON:0006241!1.44e-07!52;UBERON:0007135!1.44e-07!52;UBERON:0002616!1.55e-07!49;UBERON:0002780!1.97e-07!39;UBERON:0001890!1.97e-07!39;UBERON:0006240!1.97e-07!39;UBERON:0000468!3.84e-07!333;UBERON:0002021!4.89e-07!10;UBERON:0000411!4.89e-07!10;UBERON:0001950!4.89e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.42e-11,95;UBERON:0000924,1.42e-11,95;UBERON:0006601,1.42e-11,95;UBERON:0010371,1.46e-11,73;UBERON:0003056,2.66e-11,49;UBERON:0002346,1.29e-09,64;UBERON:0003075,1.29e-09,64;UBERON:0007284,1.29e-09,64;UBERON:0000073,5.10e-09,54;UBERON:0003080,6.20e-09,40;UBERON:0002780,1.40e-08,39;UBERON:0001890,1.40e-08,39;UBERON:0006240,1.40e-08,39;UBERON:0001049,1.46e-08,52;UBERON:0005068,1.46e-08,52;UBERON:0006241,1.46e-08,52;UBERON:0007135,1.46e-08,52;UBERON:0000955,1.98e-08,47;UBERON:0006238,1.98e-08,47;UBERON:0002021,3.59e-08,10;UBERON:0000411,3.59e-08,10;UBERON:0001950,3.59e-08,10;UBERON:0002616,5.26e-08,46;UBERON:0001017,5.33e-08,73;UBERON:0000956,6.30e-08,21;UBERON:0001869,6.30e-08,21;UBERON:0000203,6.30e-08,21;UBERON:0002020,1.83e-07,34;UBERON:0003528,2.04e-07,29;UBERON:0002791,2.04e-07,29;UBERON:0001893,2.04e-07,29;UBERON:0001016,2.25e-07,75 | |||
|phase1_expression=1.92178616525753,0.348975407639361,0,0.30246421130683,0,1.17515490338323,0.467225281191051,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0.639969691173627,0,0.57423196411502,0,0.861884930743556,0.380046838912748,0.504060259519861,0.665191531965914,0,0,0,0.577703239502549,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.38486499773135,1.21652317463417,0.917733760808408,0,0.65407546914134,0.219686182734472,0.194429899074283,1.39986421625363,1.43752564364972,0,0,0,1.02903774414379,1.43266719969378,0.515672092277442,1.21389876515759,0.528990979272033,1.26766280701236,0.338844532069132,0,0,0,0,0.299600110518405,0.384218305321555,1.97010263386108,2.02508907497536,1.26194976810829,0.856952953211411,0.441737081903227,0.857435594504678,1.53352753629178,0,2.20231761998777,1.40456071893706,1.22885226604995,1.31886287730194,1.55528994124096,0,1.11673199600552,0,0.763991238884051,2.06240009831567,1.42371680799103,1.67759501242771,0.302904773332736,0.453429360640713,2.02905142091174,0,0,0,0,0,0.140444420131752,0.511290967734173,0.779358013808606,0.35333957451034,0.422530259330042,1.28326477414318,0,0,0,1.01343946190039,1.01104889002957,0.68510327831436,0.517875767294343,0.890652834388949,1.38788261412909,0.913396434936424,1.15307748628029,1.20578112442098,1.41106448562846,0.753999547978053,1.48316980640624,1.15679485535929,0,1.45590164952668,0.662524555381181,0.484875253135222,1.86391761218122,1.46390398505774,1.46612694769419,0.510914110417183,0.479260498023681,1.19980546198682,0.381210681219194,1.64769703345305,2.74500361691176,1.63350657746724,4.17178368461463,3.58001640262463,1.66230435647648,3.0825839982874,1.2220723662038,0.373220911830279,2.0217820674694,0.841767423545896,1.43132487258974,1.60931473103431,1.98068342785884,1.65775299619287,2.31324097114515,1.40925092313335,2.06143794031403,1.29351685369508,0.431135985865684,0.945530400839096,1.58356011747554,0.657587197282725,0.834141747676794,3.48252166522167,2.88094990971121,0.796137067273973,1.40442637462647,0.257347907114715,0.284163499395593,1.03562886267751,1.17263029990548,0.720248245844059,0.710234206755631,0.787056926989615,0.617068451549513,0.697601834251224,1.07309360559848,0.817357396570186,0.658239399653922,1.97000956894914,0.972825714550269,1.02339991197733,0.658650345873152,0.939444931322602,3.57492912559016,2.46971069710283,0,0.528901133327089,1.49301775374664,1.39342003116263,1.54640953586512,0.80673409849337,1.11189021922435,0.570676878337677,0.474529061544512,1.97638745668813,1.00534083520108,0.795825888164603,1.75467678407208,2.69645822596266,1.08069024937347,1.59313018603494,0.189667900953082,0.913988100877831,0,1.22190796707189,1.74557238450863,1.1221731182451,1.83385957660346,0.738050739898011,0.627994911365499,0.863780147452604,0,0.166845105716094,0,0.449724224769707,0.202860121388503,0,0.25462585178142,0.863088412352432,0,0.274561413188081,0,0,0.624075346229121,0.505157755894224,0,0,2.21703828199926,0.947457058852424,1.30371981153621,1.86719594352707,1.17345124144251,0.837531287209079,1.90434912708811,1.95133647857799,1.7339865851681,2.87904096543407,3.34855014180723,2.45794972073607,2.59027472798843,2.02508682014116,0,0,1.47529281905711,1.10374698521893,0.481651769963376,1.05490517932983,0.983609672260053,0.504941854408746,0.94652465824877,0.780877488593277,0.861693590931196,0.955875191810208,0.891194696329576,1.13230612315533,0.809621403349789,1.75353514746787,1.18586333383957,1.92792789853084,1.27746076687442,0.712262414669021,2.60619134965722,1.48473110675282,0,1.94224508923985,0.302323556964751,0.377210159511796,0.295301892880773,1.22974059177571,0.516856586336442,0.727067458955011,0.356497378384721,1.26414703174326,0,0,0.680879211507576,0.900305470156551,1.29358683782755,0.643011105094777,1.77340233642274,1.96205699362278,1.48094118541909,2.13125464380219,0.938686832254841,1.27099242518292,0.661585194164886,1.31909002353184,1.29171541356724,1.80938774784468,1.67121281604391,2.1338316966858,0.874442509889552,1.66882771809459,0,1.65109494370578,0.185194527369712,0.376736914009382,0.410082683163076,0,1.18984900995699,0.69975726161829,0.829199842826543,0,0.949007980743406,1.42323626988794,1.51207477150522,1.04544148007234,2.18362563746178,2.15782954215713,1.57041565878138,1.04702376793612,0.777689839750757,1.24267862617385,0,0.747582730219894,0.827292452285488,0.388902376688095,0.774958940866387,1.35164900392623,0.938857909166032,1.5624526181274,0.419437377702843,0.483168241652012,0.864090018773596,0,1.21635129174099,0.821687657318618,0.51968329191118,0.358053391334963,0.79472541912506,0.240390899039938,0,0.100966449948148,0.0762068066549998,0.100826185136841,0.292373642219257,0.192423683280659,0,1.13365191807606,0.221985953374065,0.0897138566094757,0.503653849092235,1.15913756419314,2.064507229963,1.28206136987086,1.71494703263253,1.50471631210609,4.51801474093653,5.06357760157895,5.72895513439397,4.1244763762485,1.37016503954128,3.7769694869485,6.07520250208625,4.5032120322422,4.07828168085784,1.55328093525546,0.93408612825759,0.798049746802062,1.53660245178721,0.972426868273176,1.88651846365184,1.47074806760011,0.888986911206461,0.412070114477788,1.60459604795908,1.01078884705519,1.01391719956096,2.82939512079114,0.936415074698824,1.28050304809739,1.37845125493472,2.85776214769844,0.927074607558844,0.964546102318525,1.64834360321323,0.883193520806384,0.685738504770831,0.354951612318675,0.953744759789284,0.726732083161643,1.88218760830661,1.52306294205018,1.82927972872773,1.57841826862706,1.08643291076689,1.12228454331548,1.30498519936592,1.57607171800902,1.63692417267876,0.619747364743864,0.964533054905707,1.49886346762768,0.935726433781634,2.14871054048298,0.765153328275374,1.32354851471709,2.31867835620421 | |phase1_expression=1.92178616525753,0.348975407639361,0,0.30246421130683,0,1.17515490338323,0.467225281191051,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0.639969691173627,0,0.57423196411502,0,0.861884930743556,0.380046838912748,0.504060259519861,0.665191531965914,0,0,0,0.577703239502549,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.38486499773135,1.21652317463417,0.917733760808408,0,0.65407546914134,0.219686182734472,0.194429899074283,1.39986421625363,1.43752564364972,0,0,0,1.02903774414379,1.43266719969378,0.515672092277442,1.21389876515759,0.528990979272033,1.26766280701236,0.338844532069132,0,0,0,0,0.299600110518405,0.384218305321555,1.97010263386108,2.02508907497536,1.26194976810829,0.856952953211411,0.441737081903227,0.857435594504678,1.53352753629178,0,2.20231761998777,1.40456071893706,1.22885226604995,1.31886287730194,1.55528994124096,0,1.11673199600552,0,0.763991238884051,2.06240009831567,1.42371680799103,1.67759501242771,0.302904773332736,0.453429360640713,2.02905142091174,0,0,0,0,0,0.140444420131752,0.511290967734173,0.779358013808606,0.35333957451034,0.422530259330042,1.28326477414318,0,0,0,1.01343946190039,1.01104889002957,0.68510327831436,0.517875767294343,0.890652834388949,1.38788261412909,0.913396434936424,1.15307748628029,1.20578112442098,1.41106448562846,0.753999547978053,1.48316980640624,1.15679485535929,0,1.45590164952668,0.662524555381181,0.484875253135222,1.86391761218122,1.46390398505774,1.46612694769419,0.510914110417183,0.479260498023681,1.19980546198682,0.381210681219194,1.64769703345305,2.74500361691176,1.63350657746724,4.17178368461463,3.58001640262463,1.66230435647648,3.0825839982874,1.2220723662038,0.373220911830279,2.0217820674694,0.841767423545896,1.43132487258974,1.60931473103431,1.98068342785884,1.65775299619287,2.31324097114515,1.40925092313335,2.06143794031403,1.29351685369508,0.431135985865684,0.945530400839096,1.58356011747554,0.657587197282725,0.834141747676794,3.48252166522167,2.88094990971121,0.796137067273973,1.40442637462647,0.257347907114715,0.284163499395593,1.03562886267751,1.17263029990548,0.720248245844059,0.710234206755631,0.787056926989615,0.617068451549513,0.697601834251224,1.07309360559848,0.817357396570186,0.658239399653922,1.97000956894914,0.972825714550269,1.02339991197733,0.658650345873152,0.939444931322602,3.57492912559016,2.46971069710283,0,0.528901133327089,1.49301775374664,1.39342003116263,1.54640953586512,0.80673409849337,1.11189021922435,0.570676878337677,0.474529061544512,1.97638745668813,1.00534083520108,0.795825888164603,1.75467678407208,2.69645822596266,1.08069024937347,1.59313018603494,0.189667900953082,0.913988100877831,0,1.22190796707189,1.74557238450863,1.1221731182451,1.83385957660346,0.738050739898011,0.627994911365499,0.863780147452604,0,0.166845105716094,0,0.449724224769707,0.202860121388503,0,0.25462585178142,0.863088412352432,0,0.274561413188081,0,0,0.624075346229121,0.505157755894224,0,0,2.21703828199926,0.947457058852424,1.30371981153621,1.86719594352707,1.17345124144251,0.837531287209079,1.90434912708811,1.95133647857799,1.7339865851681,2.87904096543407,3.34855014180723,2.45794972073607,2.59027472798843,2.02508682014116,0,0,1.47529281905711,1.10374698521893,0.481651769963376,1.05490517932983,0.983609672260053,0.504941854408746,0.94652465824877,0.780877488593277,0.861693590931196,0.955875191810208,0.891194696329576,1.13230612315533,0.809621403349789,1.75353514746787,1.18586333383957,1.92792789853084,1.27746076687442,0.712262414669021,2.60619134965722,1.48473110675282,0,1.94224508923985,0.302323556964751,0.377210159511796,0.295301892880773,1.22974059177571,0.516856586336442,0.727067458955011,0.356497378384721,1.26414703174326,0,0,0.680879211507576,0.900305470156551,1.29358683782755,0.643011105094777,1.77340233642274,1.96205699362278,1.48094118541909,2.13125464380219,0.938686832254841,1.27099242518292,0.661585194164886,1.31909002353184,1.29171541356724,1.80938774784468,1.67121281604391,2.1338316966858,0.874442509889552,1.66882771809459,0,1.65109494370578,0.185194527369712,0.376736914009382,0.410082683163076,0,1.18984900995699,0.69975726161829,0.829199842826543,0,0.949007980743406,1.42323626988794,1.51207477150522,1.04544148007234,2.18362563746178,2.15782954215713,1.57041565878138,1.04702376793612,0.777689839750757,1.24267862617385,0,0.747582730219894,0.827292452285488,0.388902376688095,0.774958940866387,1.35164900392623,0.938857909166032,1.5624526181274,0.419437377702843,0.483168241652012,0.864090018773596,0,1.21635129174099,0.821687657318618,0.51968329191118,0.358053391334963,0.79472541912506,0.240390899039938,0,0.100966449948148,0.0762068066549998,0.100826185136841,0.292373642219257,0.192423683280659,0,1.13365191807606,0.221985953374065,0.0897138566094757,0.503653849092235,1.15913756419314,2.064507229963,1.28206136987086,1.71494703263253,1.50471631210609,4.51801474093653,5.06357760157895,5.72895513439397,4.1244763762485,1.37016503954128,3.7769694869485,6.07520250208625,4.5032120322422,4.07828168085784,1.55328093525546,0.93408612825759,0.798049746802062,1.53660245178721,0.972426868273176,1.88651846365184,1.47074806760011,0.888986911206461,0.412070114477788,1.60459604795908,1.01078884705519,1.01391719956096,2.82939512079114,0.936415074698824,1.28050304809739,1.37845125493472,2.85776214769844,0.927074607558844,0.964546102318525,1.64834360321323,0.883193520806384,0.685738504770831,0.354951612318675,0.953744759789284,0.726732083161643,1.88218760830661,1.52306294205018,1.82927972872773,1.57841826862706,1.08643291076689,1.12228454331548,1.30498519936592,1.57607171800902,1.63692417267876,0.619747364743864,0.964533054905707,1.49886346762768,0.935726433781634,2.14871054048298,0.765153328275374,1.32354851471709,2.31867835620421 | ||
|short_description=p7@Lrrc49 | |short_description=p7@Lrrc49 | ||
}} | }} |
Revision as of 15:41, 13 November 2012
Short description: | p7@Lrrc49 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Lrrc49_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 35bp_to_ENSMUST00000114034_5end |
EntrezGene: | Lrrc49 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.42e-11 | 95 |
ectoderm | 1.42e-11 | 95 |
presumptive ectoderm | 1.42e-11 | 95 |
ecto-epithelium | 1.46e-11 | 73 |
pre-chordal neural plate | 2.66e-11 | 49 |
neurectoderm | 1.29e-09 | 64 |
neural plate | 1.29e-09 | 64 |
presumptive neural plate | 1.29e-09 | 64 |
regional part of nervous system | 5.10e-09 | 54 |
anterior neural tube | 6.20e-09 | 40 |
regional part of forebrain | 1.40e-08 | 39 |
forebrain | 1.40e-08 | 39 |
future forebrain | 1.40e-08 | 39 |
neural tube | 1.46e-08 | 52 |
neural rod | 1.46e-08 | 52 |
future spinal cord | 1.46e-08 | 52 |
neural keel | 1.46e-08 | 52 |
brain | 1.98e-08 | 47 |
future brain | 1.98e-08 | 47 |
occipital lobe | 3.59e-08 | 10 |
visual cortex | 3.59e-08 | 10 |
neocortex | 3.59e-08 | 10 |
regional part of brain | 5.26e-08 | 46 |
central nervous system | 5.33e-08 | 73 |
cerebral cortex | 6.30e-08 | 21 |
cerebral hemisphere | 6.30e-08 | 21 |
pallium | 6.30e-08 | 21 |
gray matter | 1.83e-07 | 34 |
brain grey matter | 2.04e-07 | 29 |
regional part of telencephalon | 2.04e-07 | 29 |
telencephalon | 2.04e-07 | 29 |
nervous system | 2.25e-07 | 75 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.