FFCP PHASE1:Mm9::chr1:137482308..137482394,-: Difference between revisions
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|id=chr1:137482308..137482394,- | |id=chr1:137482308..137482394,- | ||
|ontology_enrichment_celltype=CL:0000540!1.87e-14!33;CL:0000047!1.87e-14!33;CL:0000031!1.87e-14!33;CL:0000404!1.87e-14!33;CL:0000117!4.87e-14!23;CL:0000337!4.87e-14!23;CL:0002319!8.56e-11!43;CL:0000393!1.15e-10!39;CL:0000211!1.15e-10!39;CL:0000221!2.60e-10!44;CL:0000133!2.60e-10!44;CL:0000055!1.27e-07!50 | |ontology_enrichment_celltype=CL:0000540!1.87e-14!33;CL:0000047!1.87e-14!33;CL:0000031!1.87e-14!33;CL:0000404!1.87e-14!33;CL:0000117!4.87e-14!23;CL:0000337!4.87e-14!23;CL:0002319!8.56e-11!43;CL:0000393!1.15e-10!39;CL:0000211!1.15e-10!39;CL:0000221!2.60e-10!44;CL:0000133!2.60e-10!44;CL:0000055!1.27e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.75e-15,33;CL:0000047,6.75e-15,33;CL:0000031,6.75e-15,33;CL:0000404,6.75e-15,33;CL:0000117,1.81e-14,23;CL:0000337,1.81e-14,23;CL:0002319,6.79e-11,43;CL:0000393,7.04e-11,39;CL:0000211,7.04e-11,39;CL:0000221,3.41e-10,44;CL:0000133,3.41e-10,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.99e-25!73;UBERON:0005743!4.99e-25!73;UBERON:0000073!5.89e-24!75;UBERON:0001016!5.89e-24!75;UBERON:0004121!4.14e-21!102;UBERON:0000924!4.14e-21!102;UBERON:0006601!4.14e-21!102;UBERON:0002346!3.25e-20!71;UBERON:0003075!3.25e-20!71;UBERON:0007284!3.25e-20!71;UBERON:0001049!1.09e-19!52;UBERON:0005068!1.09e-19!52;UBERON:0006241!1.09e-19!52;UBERON:0007135!1.09e-19!52;UBERON:0000955!6.43e-18!50;UBERON:0006238!6.43e-18!50;UBERON:0002020!2.21e-17!34;UBERON:0002616!2.55e-17!49;UBERON:0000033!1.48e-16!63;UBERON:0003056!4.87e-16!49;UBERON:0003080!1.04e-15!40;UBERON:0002780!3.60e-15!39;UBERON:0001890!3.60e-15!39;UBERON:0006240!3.60e-15!39;UBERON:0002791!4.03e-14!29;UBERON:0003528!4.03e-14!29;UBERON:0001893!4.03e-14!29;UBERON:0000956!5.00e-10!21;UBERON:0001869!5.00e-10!21;UBERON:0000203!5.00e-10!21;UBERON:0000468!1.03e-09!333;UBERON:0002619!8.43e-08!17;UBERON:0000922!2.94e-07!328;UBERON:0002021!3.84e-07!10;UBERON:0000411!3.84e-07!10;UBERON:0001950!3.84e-07!10 | |ontology_enrichment_uberon=UBERON:0001017!4.99e-25!73;UBERON:0005743!4.99e-25!73;UBERON:0000073!5.89e-24!75;UBERON:0001016!5.89e-24!75;UBERON:0004121!4.14e-21!102;UBERON:0000924!4.14e-21!102;UBERON:0006601!4.14e-21!102;UBERON:0002346!3.25e-20!71;UBERON:0003075!3.25e-20!71;UBERON:0007284!3.25e-20!71;UBERON:0001049!1.09e-19!52;UBERON:0005068!1.09e-19!52;UBERON:0006241!1.09e-19!52;UBERON:0007135!1.09e-19!52;UBERON:0000955!6.43e-18!50;UBERON:0006238!6.43e-18!50;UBERON:0002020!2.21e-17!34;UBERON:0002616!2.55e-17!49;UBERON:0000033!1.48e-16!63;UBERON:0003056!4.87e-16!49;UBERON:0003080!1.04e-15!40;UBERON:0002780!3.60e-15!39;UBERON:0001890!3.60e-15!39;UBERON:0006240!3.60e-15!39;UBERON:0002791!4.03e-14!29;UBERON:0003528!4.03e-14!29;UBERON:0001893!4.03e-14!29;UBERON:0000956!5.00e-10!21;UBERON:0001869!5.00e-10!21;UBERON:0000203!5.00e-10!21;UBERON:0000468!1.03e-09!333;UBERON:0002619!8.43e-08!17;UBERON:0000922!2.94e-07!328;UBERON:0002021!3.84e-07!10;UBERON:0000411!3.84e-07!10;UBERON:0001950!3.84e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.47e-26,73;UBERON:0001016,1.85e-24,75;UBERON:0002346,1.76e-21,64;UBERON:0003075,1.76e-21,64;UBERON:0007284,1.76e-21,64;UBERON:0000073,2.39e-21,54;UBERON:0004121,7.11e-21,95;UBERON:0000924,7.11e-21,95;UBERON:0006601,7.11e-21,95;UBERON:0001049,2.17e-20,52;UBERON:0005068,2.17e-20,52;UBERON:0006241,2.17e-20,52;UBERON:0007135,2.17e-20,52;UBERON:0002020,5.15e-18,34;UBERON:0010314,9.37e-18,92;UBERON:0010371,1.01e-17,73;UBERON:0000955,3.66e-17,47;UBERON:0006238,3.66e-17,47;UBERON:0003056,1.31e-16,49;UBERON:0002616,1.49e-16,46;UBERON:0003080,2.83e-16,40;UBERON:0002780,1.03e-15,39;UBERON:0001890,1.03e-15,39;UBERON:0006240,1.03e-15,39;UBERON:0003528,1.23e-14,29;UBERON:0002791,1.23e-14,29;UBERON:0001893,1.23e-14,29;UBERON:0000956,2.12e-10,21;UBERON:0001869,2.12e-10,21;UBERON:0000203,2.12e-10,21;UBERON:0002619,4.29e-08,17;UBERON:0002021,2.46e-07,10;UBERON:0000411,2.46e-07,10;UBERON:0001950,2.46e-07,10 | |||
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| ||
|short_description=p1@Nav1 | |short_description=p1@Nav1 | ||
}} | }} |
Revision as of 21:56, 13 November 2012
Short description: | p1@Nav1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nav1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -22bp_to_uc007ctk.1, uc011wsl.1_5end |
EntrezGene: | Nav1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.75e-15 | 33 |
neuronal stem cell | 6.75e-15 | 33 |
neuroblast | 6.75e-15 | 33 |
electrically signaling cell | 6.75e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.81e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.81e-14 | 23 |
neural cell | 6.79e-11 | 43 |
electrically responsive cell | 7.04e-11 | 39 |
electrically active cell | 7.04e-11 | 39 |
ectodermal cell | 3.41e-10 | 44 |
neurectodermal cell | 3.41e-10 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.47e-26 | 73 |
nervous system | 1.85e-24 | 75 |
neurectoderm | 1.76e-21 | 64 |
neural plate | 1.76e-21 | 64 |
presumptive neural plate | 1.76e-21 | 64 |
regional part of nervous system | 2.39e-21 | 54 |
ectoderm-derived structure | 7.11e-21 | 95 |
ectoderm | 7.11e-21 | 95 |
presumptive ectoderm | 7.11e-21 | 95 |
neural tube | 2.17e-20 | 52 |
neural rod | 2.17e-20 | 52 |
future spinal cord | 2.17e-20 | 52 |
neural keel | 2.17e-20 | 52 |
gray matter | 5.15e-18 | 34 |
structure with developmental contribution from neural crest | 9.37e-18 | 92 |
ecto-epithelium | 1.01e-17 | 73 |
brain | 3.66e-17 | 47 |
future brain | 3.66e-17 | 47 |
pre-chordal neural plate | 1.31e-16 | 49 |
regional part of brain | 1.49e-16 | 46 |
anterior neural tube | 2.83e-16 | 40 |
regional part of forebrain | 1.03e-15 | 39 |
forebrain | 1.03e-15 | 39 |
future forebrain | 1.03e-15 | 39 |
brain grey matter | 1.23e-14 | 29 |
regional part of telencephalon | 1.23e-14 | 29 |
telencephalon | 1.23e-14 | 29 |
cerebral cortex | 2.12e-10 | 21 |
cerebral hemisphere | 2.12e-10 | 21 |
pallium | 2.12e-10 | 21 |
regional part of cerebral cortex | 4.29e-08 | 17 |
occipital lobe | 2.46e-07 | 10 |
visual cortex | 2.46e-07 | 10 |
neocortex | 2.46e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.