FFCP PHASE1:Mm9::chr2:153355941..153355988,-: Difference between revisions
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|id=chr2:153355941..153355988,- | |id=chr2:153355941..153355988,- | ||
|ontology_enrichment_celltype=CL:0000540!4.92e-12!33;CL:0000047!4.92e-12!33;CL:0000031!4.92e-12!33;CL:0000404!4.92e-12!33;CL:0002319!1.27e-08!43;CL:0000221!1.61e-08!44;CL:0000133!1.61e-08!44;CL:0000117!3.18e-08!23;CL:0000337!3.18e-08!23;CL:0000393!3.07e-07!39;CL:0000211!3.07e-07!39 | |ontology_enrichment_celltype=CL:0000540!4.92e-12!33;CL:0000047!4.92e-12!33;CL:0000031!4.92e-12!33;CL:0000404!4.92e-12!33;CL:0002319!1.27e-08!43;CL:0000221!1.61e-08!44;CL:0000133!1.61e-08!44;CL:0000117!3.18e-08!23;CL:0000337!3.18e-08!23;CL:0000393!3.07e-07!39;CL:0000211!3.07e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.37e-13,33;CL:0000047,8.37e-13,33;CL:0000031,8.37e-13,33;CL:0000404,8.37e-13,33;CL:0000393,5.02e-09,39;CL:0000211,5.02e-09,39;CL:0002319,1.44e-08,43;CL:0000117,2.94e-08,23;CL:0000337,2.94e-08,23;CL:0000221,4.09e-08,44;CL:0000133,4.09e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.70e-21!73;UBERON:0005743!6.70e-21!73;UBERON:0000073!9.28e-20!75;UBERON:0001016!9.28e-20!75;UBERON:0002346!1.97e-17!71;UBERON:0003075!1.97e-17!71;UBERON:0007284!1.97e-17!71;UBERON:0004121!1.20e-15!102;UBERON:0000924!1.20e-15!102;UBERON:0006601!1.20e-15!102;UBERON:0001049!1.89e-14!52;UBERON:0005068!1.89e-14!52;UBERON:0006241!1.89e-14!52;UBERON:0007135!1.89e-14!52;UBERON:0003056!2.16e-14!49;UBERON:0003080!3.31e-13!40;UBERON:0000955!6.02e-13!50;UBERON:0006238!6.02e-13!50;UBERON:0002780!7.10e-13!39;UBERON:0001890!7.10e-13!39;UBERON:0006240!7.10e-13!39;UBERON:0000033!8.40e-13!63;UBERON:0002020!1.05e-12!34;UBERON:0002616!1.53e-12!49;UBERON:0002791!5.02e-10!29;UBERON:0003528!5.02e-10!29;UBERON:0001893!5.02e-10!29;UBERON:0000956!5.34e-07!21;UBERON:0001869!5.34e-07!21;UBERON:0000203!5.34e-07!21;UBERON:0007811!7.15e-07!86;UBERON:0002619!9.81e-07!17 | |ontology_enrichment_uberon=UBERON:0001017!6.70e-21!73;UBERON:0005743!6.70e-21!73;UBERON:0000073!9.28e-20!75;UBERON:0001016!9.28e-20!75;UBERON:0002346!1.97e-17!71;UBERON:0003075!1.97e-17!71;UBERON:0007284!1.97e-17!71;UBERON:0004121!1.20e-15!102;UBERON:0000924!1.20e-15!102;UBERON:0006601!1.20e-15!102;UBERON:0001049!1.89e-14!52;UBERON:0005068!1.89e-14!52;UBERON:0006241!1.89e-14!52;UBERON:0007135!1.89e-14!52;UBERON:0003056!2.16e-14!49;UBERON:0003080!3.31e-13!40;UBERON:0000955!6.02e-13!50;UBERON:0006238!6.02e-13!50;UBERON:0002780!7.10e-13!39;UBERON:0001890!7.10e-13!39;UBERON:0006240!7.10e-13!39;UBERON:0000033!8.40e-13!63;UBERON:0002020!1.05e-12!34;UBERON:0002616!1.53e-12!49;UBERON:0002791!5.02e-10!29;UBERON:0003528!5.02e-10!29;UBERON:0001893!5.02e-10!29;UBERON:0000956!5.34e-07!21;UBERON:0001869!5.34e-07!21;UBERON:0000203!5.34e-07!21;UBERON:0007811!7.15e-07!86;UBERON:0002619!9.81e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.10e-21,73;UBERON:0001016,3.66e-20,75;UBERON:0002346,1.41e-16,64;UBERON:0003075,1.41e-16,64;UBERON:0007284,1.41e-16,64;UBERON:0004121,5.52e-16,95;UBERON:0000924,5.52e-16,95;UBERON:0006601,5.52e-16,95;UBERON:0003056,1.92e-15,49;UBERON:0000073,7.29e-15,54;UBERON:0003080,1.33e-14,40;UBERON:0002780,3.33e-14,39;UBERON:0001890,3.33e-14,39;UBERON:0006240,3.33e-14,39;UBERON:0001049,4.49e-14,52;UBERON:0005068,4.49e-14,52;UBERON:0006241,4.49e-14,52;UBERON:0007135,4.49e-14,52;UBERON:0002020,6.20e-14,34;UBERON:0010371,1.20e-12,73;UBERON:0000955,4.12e-12,47;UBERON:0006238,4.12e-12,47;UBERON:0002616,1.19e-11,46;UBERON:0003528,9.61e-11,29;UBERON:0002791,9.61e-11,29;UBERON:0001893,9.61e-11,29;UBERON:0010314,1.94e-10,92;UBERON:0002619,1.22e-07,17;UBERON:0002021,1.47e-07,10;UBERON:0000411,1.47e-07,10;UBERON:0001950,1.47e-07,10;UBERON:0000956,1.88e-07,21;UBERON:0001869,1.88e-07,21;UBERON:0000203,1.88e-07,21 | |||
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| ||
|short_description=p3@8430427H17Rik | |short_description=p3@8430427H17Rik | ||
}} | }} |
Revision as of 21:44, 14 November 2012
Short description: | p3@8430427H17Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_8430427H17Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:966 |
Association with transcript: | -234bp_to_ENSMUST00000035346, NM_001134300, uc008nhv.2_5end |
EntrezGene: | 8430427H17Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.37e-13 | 33 |
neuronal stem cell | 8.37e-13 | 33 |
neuroblast | 8.37e-13 | 33 |
electrically signaling cell | 8.37e-13 | 33 |
electrically responsive cell | 5.02e-09 | 39 |
electrically active cell | 5.02e-09 | 39 |
neural cell | 1.44e-08 | 43 |
CNS neuron (sensu Vertebrata) | 2.94e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.94e-08 | 23 |
ectodermal cell | 4.09e-08 | 44 |
neurectodermal cell | 4.09e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.10e-21 | 73 |
nervous system | 3.66e-20 | 75 |
neurectoderm | 1.41e-16 | 64 |
neural plate | 1.41e-16 | 64 |
presumptive neural plate | 1.41e-16 | 64 |
ectoderm-derived structure | 5.52e-16 | 95 |
ectoderm | 5.52e-16 | 95 |
presumptive ectoderm | 5.52e-16 | 95 |
pre-chordal neural plate | 1.92e-15 | 49 |
regional part of nervous system | 7.29e-15 | 54 |
anterior neural tube | 1.33e-14 | 40 |
regional part of forebrain | 3.33e-14 | 39 |
forebrain | 3.33e-14 | 39 |
future forebrain | 3.33e-14 | 39 |
neural tube | 4.49e-14 | 52 |
neural rod | 4.49e-14 | 52 |
future spinal cord | 4.49e-14 | 52 |
neural keel | 4.49e-14 | 52 |
gray matter | 6.20e-14 | 34 |
ecto-epithelium | 1.20e-12 | 73 |
brain | 4.12e-12 | 47 |
future brain | 4.12e-12 | 47 |
regional part of brain | 1.19e-11 | 46 |
brain grey matter | 9.61e-11 | 29 |
regional part of telencephalon | 9.61e-11 | 29 |
telencephalon | 9.61e-11 | 29 |
structure with developmental contribution from neural crest | 1.94e-10 | 92 |
regional part of cerebral cortex | 1.22e-07 | 17 |
occipital lobe | 1.47e-07 | 10 |
visual cortex | 1.47e-07 | 10 |
neocortex | 1.47e-07 | 10 |
cerebral cortex | 1.88e-07 | 21 |
cerebral hemisphere | 1.88e-07 | 21 |
pallium | 1.88e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.