FFCP PHASE1:Mm9::chr15:76307703..76307714,-: Difference between revisions
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|id=chr15:76307703..76307714,- | |id=chr15:76307703..76307714,- | ||
|ontology_enrichment_celltype=CL:0000055!2.31e-12!50;CL:0002319!6.98e-12!43;CL:0000221!7.89e-12!44;CL:0000133!7.89e-12!44;CL:0002321!5.52e-11!70;CL:0000220!5.52e-11!70;CL:0000393!1.09e-10!39;CL:0000211!1.09e-10!39;CL:0000117!3.44e-10!23;CL:0000337!3.44e-10!23;CL:0000540!2.49e-09!33;CL:0000047!2.49e-09!33;CL:0000031!2.49e-09!33;CL:0000404!2.49e-09!33;CL:0000548!3.33e-08!115;CL:0000004!3.33e-08!115;CL:0000255!3.33e-08!115;CL:0002371!5.75e-07!118 | |ontology_enrichment_celltype=CL:0000055!2.31e-12!50;CL:0002319!6.98e-12!43;CL:0000221!7.89e-12!44;CL:0000133!7.89e-12!44;CL:0002321!5.52e-11!70;CL:0000220!5.52e-11!70;CL:0000393!1.09e-10!39;CL:0000211!1.09e-10!39;CL:0000117!3.44e-10!23;CL:0000337!3.44e-10!23;CL:0000540!2.49e-09!33;CL:0000047!2.49e-09!33;CL:0000031!2.49e-09!33;CL:0000404!2.49e-09!33;CL:0000548!3.33e-08!115;CL:0000004!3.33e-08!115;CL:0000255!3.33e-08!115;CL:0002371!5.75e-07!118 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.97e-12,43;CL:0000221,7.87e-12,44;CL:0000133,7.87e-12,44;CL:0002321,5.34e-11,70;CL:0000393,1.08e-10,39;CL:0000211,1.08e-10,39;CL:0000117,3.44e-10,23;CL:0000337,3.44e-10,23;CL:0000540,2.48e-09,33;CL:0000047,2.48e-09,33;CL:0000031,2.48e-09,33;CL:0000404,2.48e-09,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.18e-20!75;UBERON:0001016!9.18e-20!75;UBERON:0001017!1.01e-19!73;UBERON:0005743!1.01e-19!73;UBERON:0002020!3.09e-18!34;UBERON:0001049!4.04e-17!52;UBERON:0005068!4.04e-17!52;UBERON:0006241!4.04e-17!52;UBERON:0007135!4.04e-17!52;UBERON:0002791!9.24e-16!29;UBERON:0003528!9.24e-16!29;UBERON:0001893!9.24e-16!29;UBERON:0004121!4.74e-15!102;UBERON:0000924!4.74e-15!102;UBERON:0006601!4.74e-15!102;UBERON:0002346!2.87e-14!71;UBERON:0003075!2.87e-14!71;UBERON:0007284!2.87e-14!71;UBERON:0002616!2.91e-14!49;UBERON:0000955!3.40e-14!50;UBERON:0006238!3.40e-14!50;UBERON:0003080!1.75e-12!40;UBERON:0002780!3.09e-12!39;UBERON:0001890!3.09e-12!39;UBERON:0006240!3.09e-12!39;UBERON:0000956!1.78e-11!21;UBERON:0001869!1.78e-11!21;UBERON:0000203!1.78e-11!21;UBERON:0000033!3.35e-10!63;UBERON:0003056!3.71e-10!49;UBERON:0002619!1.24e-09!17;UBERON:0002021!9.89e-08!10;UBERON:0000411!9.89e-08!10;UBERON:0001950!9.89e-08!10 | |ontology_enrichment_uberon=UBERON:0000073!9.18e-20!75;UBERON:0001016!9.18e-20!75;UBERON:0001017!1.01e-19!73;UBERON:0005743!1.01e-19!73;UBERON:0002020!3.09e-18!34;UBERON:0001049!4.04e-17!52;UBERON:0005068!4.04e-17!52;UBERON:0006241!4.04e-17!52;UBERON:0007135!4.04e-17!52;UBERON:0002791!9.24e-16!29;UBERON:0003528!9.24e-16!29;UBERON:0001893!9.24e-16!29;UBERON:0004121!4.74e-15!102;UBERON:0000924!4.74e-15!102;UBERON:0006601!4.74e-15!102;UBERON:0002346!2.87e-14!71;UBERON:0003075!2.87e-14!71;UBERON:0007284!2.87e-14!71;UBERON:0002616!2.91e-14!49;UBERON:0000955!3.40e-14!50;UBERON:0006238!3.40e-14!50;UBERON:0003080!1.75e-12!40;UBERON:0002780!3.09e-12!39;UBERON:0001890!3.09e-12!39;UBERON:0006240!3.09e-12!39;UBERON:0000956!1.78e-11!21;UBERON:0001869!1.78e-11!21;UBERON:0000203!1.78e-11!21;UBERON:0000033!3.35e-10!63;UBERON:0003056!3.71e-10!49;UBERON:0002619!1.24e-09!17;UBERON:0002021!9.89e-08!10;UBERON:0000411!9.89e-08!10;UBERON:0001950!9.89e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.15e-20,75;UBERON:0001017,1.00e-19,73;UBERON:0002020,3.08e-18,34;UBERON:0001049,4.03e-17,52;UBERON:0005068,4.03e-17,52;UBERON:0006241,4.03e-17,52;UBERON:0007135,4.03e-17,52;UBERON:0000073,1.04e-16,54;UBERON:0003528,9.22e-16,29;UBERON:0002791,9.22e-16,29;UBERON:0001893,9.22e-16,29;UBERON:0004121,2.00e-15,95;UBERON:0000924,2.00e-15,95;UBERON:0006601,2.00e-15,95;UBERON:0002346,4.78e-15,64;UBERON:0003075,4.78e-15,64;UBERON:0007284,4.78e-15,64;UBERON:0002616,2.44e-14,46;UBERON:0000955,2.94e-14,47;UBERON:0006238,2.94e-14,47;UBERON:0010371,6.27e-14,73;UBERON:0003080,1.74e-12,40;UBERON:0002780,3.08e-12,39;UBERON:0001890,3.08e-12,39;UBERON:0006240,3.08e-12,39;UBERON:0000956,1.77e-11,21;UBERON:0001869,1.77e-11,21;UBERON:0000203,1.77e-11,21;UBERON:0003056,3.70e-10,49;UBERON:0002619,1.23e-09,17;UBERON:0010314,2.90e-09,92;UBERON:0002021,9.88e-08,10;UBERON:0000411,9.88e-08,10;UBERON:0001950,9.88e-08,10 | |||
|phase1_expression=2.24208385946712,1.39590163055744,3.18499467572675,3.62957053568196,2.50447864973174,2.51818907867835,3.97141489012394,2.1950964985068,2.53419699873,3.04283884218592,9.41698825240277,8.21653237651965,2.05440875917447,1.48614684112296,3.99731714178795,2.02475267389826,2.79824751251259,2.20823515750766,2.19383093769182,2.54633791078818,3.48677489619386,3.27660138962921,2.87319768052829,2.55987876469451,2.2940928106717,1.72269589234506,2.15380998079537,1.72376986148711,3.42042155021473,1.51218077855958,3.54768817048488,9.52546010189447,14.7615549020297,0,4.33277429626912,2.99222361645286,2.24586291888606,0,1.5626706890476,1.0470474879476,0.588231488031014,0,0.485510353031154,6.92432498865675,6.69087746048796,6.05704282133549,6.25913075478431,6.75877984779384,3.95435128922049,6.02732687130279,4.05960622713551,4.31257693094915,1.34226084846189,0.725362142011344,1.68046899571232,2.57259436035947,3.43840127926508,5.67239301505187,5.86717736492834,8.99284664762456,15.2119536841483,10.5041804941431,7.11435836888911,4.49949858640699,2.96659908770092,7.8152812644071,5.09320187881288,5.37905627450176,6.0139975138917,8.10035629990144,5.25812403378455,9.14083150092171,8.83474163806454,5.75706756310284,7.09256485534949,3.67687514644008,1.10115880999389,5.61824287574826,7.37311359629969,8.83638127792299,9.60620257825301,6.25096044668112,6.97957497503452,7.87867654044352,5.95913166329559,5.59794312399969,5.26775218956681,6.33758115806022,5.83091688665517,2.49386148352392,0.579728977403356,0.860423876981386,4.0798280022465,3.77792234146472,3.24888208723835,1.34408066129201,2.24711072210803,5.79463096765396,5.19572009205738,6.71345191569646,3.23939865486365,3.84979432242953,5.09610479413291,0,5.19578498426914,5.06719730950197,3.53867111510348,2.62622923353838,1.03575153458869,3.41416919849097,3.29622120855658,4.56698217468212,2.7673859670727,2.71300752994721,2.11659672844269,3.01599819191221,2.47194967734374,1.3013942122792,0.884610551949874,1.61766849947409,1.76673214768315,1.93950101254089,0,3.80615036115011,3.14170060220183,3.83185582812887,1.7972268675888,2.99951365496704,1.77898317902291,4.49371918214468,9.60751265919116,5.78010019719176,7.47444576826789,8.95004100656157,7.06479351502504,6.00292673350703,2.24046600470696,3.11017426525233,4.80173241023982,2.94618598241064,1.95180664444056,5.28774840196988,3.96136685571768,2.26057226753573,1.97305847538851,2.69038812598185,2.99845518591132,2.32833033665114,4.95806383745537,1.51284864134255,3.16712023495108,2.84954452155847,2.50242524303038,1.0447564995665,2.88094990971121,2.18937693500343,4.91549231119264,3.86021860672073,2.55747149456033,2.89976081549703,3.04883877975425,2.88099298337624,2.60419209143731,1.57411385397923,2.31400669331067,2.79040733700489,3.21928081679543,2.80236821681207,1.97471819896177,2.13417703302824,1.70244500046297,2.04679982395465,1.75640092232841,1.74468344388483,6.09840850835969,5.04232600658494,2.64335026387038,2.64450566663544,2.13288250535234,3.0190767341857,2.96395161040815,4.43703754171354,2.44615848229357,2.85338439168839,4.2707615539006,2.63518327558417,3.01602250560323,1.1937388322469,3.50935356814416,0,1.29682829924817,2.58883655230677,3.79335801906163,2.97046132785295,2.25415471346161,1.62921062276251,2.90928730751439,2.10407459670956,1.39120381673366,2.36176236767363,2.98297582898612,1.85095745882701,1.1858105083486,2.66952169145751,3.53806191203765,4.04751802292737,3.04290182082754,3.85883455603867,2.80088436959562,3.16465751195892,1.29708181420028,1.64736847912849,0,3.34926852901653,2.80833905803104,2.27320990152401,3.58794827043824,1.4473305640901,1.29327233116623,4.16881105895066,3.42226450528254,2.54617628662782,2.81628297946203,1.67506257441816,1.6663054862021,1.56106918286239,2.20689201748667,1.10732344824387,1.2756381492599,1.3109065177259,1.38147985492716,1.44649058581512,3.01582567878545,1.08781136763742,3.44234991113325,2.20749397043786,6.26147300952389,5.97779601620236,3.11476396215683,2.01976741763498,5.67914794949262,3.12350995437311,3.87762115919038,4.06246956519338,4.01037613348309,3.39691836946599,2.02405350837447,2.92255857911312,4.34816555741176,3.21321316421807,2.41298144854057,2.67098405500883,1.30309567482861,1.97964147567043,3.98235415019888,3.39892890616974,3.62788268357701,2.45186603682668,4.13422650033082,4.61152721915891,2.84271122485043,2.54473610634254,2.13898427030833,6.63677191665214,6.32511651449993,9.28219889233682,2.04263763452273,2.16073312837572,2.58717367565509,3.00071849044229,2.6601035046341,2.14042581122485,2.13913726782757,3.65357938937519,2.58138878870081,1.27099242518292,4.19003956304428,3.13283880588812,1.61464426695906,3.1362720962641,4.17803204010978,4.76008609260678,0.874442509889552,4.82105785227325,1.70870880797853,2.68302928352189,1.29636169158798,2.26042148405629,1.91371918809435,2.0590035588587,1.69978429993855,2.79902904647316,1.79659965945751,5.72802370809068,3.95419991976419,3.65975040828328,2.70013352054503,4.80903080833278,1.74690050996942,1.61837215661785,1.32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| ||
|short_description=p2@Bop1 | |short_description=p2@Bop1 | ||
}} | }} |
Revision as of 00:16, 15 November 2012
Short description: | p2@Bop1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Bop1_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_ENSMUST00000023217, NM_013481, uc007wkf.1_5end |
EntrezGene: | Bop1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.97e-12 | 43 |
ectodermal cell | 7.87e-12 | 44 |
neurectodermal cell | 7.87e-12 | 44 |
embryonic cell | 5.34e-11 | 70 |
electrically responsive cell | 1.08e-10 | 39 |
electrically active cell | 1.08e-10 | 39 |
CNS neuron (sensu Vertebrata) | 3.44e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.44e-10 | 23 |
neuron | 2.48e-09 | 33 |
neuronal stem cell | 2.48e-09 | 33 |
neuroblast | 2.48e-09 | 33 |
electrically signaling cell | 2.48e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.15e-20 | 75 |
central nervous system | 1.00e-19 | 73 |
gray matter | 3.08e-18 | 34 |
neural tube | 4.03e-17 | 52 |
neural rod | 4.03e-17 | 52 |
future spinal cord | 4.03e-17 | 52 |
neural keel | 4.03e-17 | 52 |
regional part of nervous system | 1.04e-16 | 54 |
brain grey matter | 9.22e-16 | 29 |
regional part of telencephalon | 9.22e-16 | 29 |
telencephalon | 9.22e-16 | 29 |
ectoderm-derived structure | 2.00e-15 | 95 |
ectoderm | 2.00e-15 | 95 |
presumptive ectoderm | 2.00e-15 | 95 |
neurectoderm | 4.78e-15 | 64 |
neural plate | 4.78e-15 | 64 |
presumptive neural plate | 4.78e-15 | 64 |
regional part of brain | 2.44e-14 | 46 |
brain | 2.94e-14 | 47 |
future brain | 2.94e-14 | 47 |
ecto-epithelium | 6.27e-14 | 73 |
anterior neural tube | 1.74e-12 | 40 |
regional part of forebrain | 3.08e-12 | 39 |
forebrain | 3.08e-12 | 39 |
future forebrain | 3.08e-12 | 39 |
cerebral cortex | 1.77e-11 | 21 |
cerebral hemisphere | 1.77e-11 | 21 |
pallium | 1.77e-11 | 21 |
pre-chordal neural plate | 3.70e-10 | 49 |
regional part of cerebral cortex | 1.23e-09 | 17 |
structure with developmental contribution from neural crest | 2.90e-09 | 92 |
occipital lobe | 9.88e-08 | 10 |
visual cortex | 9.88e-08 | 10 |
neocortex | 9.88e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.