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MCL coexpression mm9:697: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0010314!1.55e-14!92;UBERON:0000073!6.50e-11!54;UBERON:0001049!7.88e-10!52;UBERON:0005068!7.88e-10!52;UBERON:0006241!7.88e-10!52;UBERON:0007135!7.88e-10!52;UBERON:0000468!9.26e-10!333;UBERON:0004111!1.84e-09!122;UBERON:0000025!2.22e-09!114;UBERON:0002346!1.20e-08!64;UBERON:0003075!1.20e-08!64;UBERON:0007284!1.20e-08!64;UBERON:0000955!4.87e-08!47;UBERON:0006238!4.87e-08!47;UBERON:0010371!5.97e-08!73;UBERON:0002616!1.32e-07!46;UBERON:0007100!5.62e-07!18;UBERON:0000948!5.62e-07!18;UBERON:0005498!5.62e-07!18;UBERON:0004140!5.62e-07!18;UBERON:0009881!5.62e-07!18;UBERON:0004141!5.62e-07!18;UBERON:0003084!5.62e-07!18;UBERON:0007005!5.62e-07!18;UBERON:0004139!5.62e-07!18;UBERON:0004291!5.62e-07!18;UBERON:0004121!7.57e-07!95;UBERON:0000924!7.57e-07!95;UBERON:0006601!7.57e-07!95;UBERON:0000479!8.61e-07!349;UBERON:0001017!8.83e-07!73
|ontology_enrichment_uberon=UBERON:0010314!1.55e-14!92;UBERON:0000073!6.50e-11!54;UBERON:0001049!7.88e-10!52;UBERON:0005068!7.88e-10!52;UBERON:0006241!7.88e-10!52;UBERON:0007135!7.88e-10!52;UBERON:0000468!9.26e-10!333;UBERON:0004111!1.84e-09!122;UBERON:0000025!2.22e-09!114;UBERON:0002346!1.20e-08!64;UBERON:0003075!1.20e-08!64;UBERON:0007284!1.20e-08!64;UBERON:0000955!4.87e-08!47;UBERON:0006238!4.87e-08!47;UBERON:0010371!5.97e-08!73;UBERON:0002616!1.32e-07!46;UBERON:0007100!5.62e-07!18;UBERON:0000948!5.62e-07!18;UBERON:0005498!5.62e-07!18;UBERON:0004140!5.62e-07!18;UBERON:0009881!5.62e-07!18;UBERON:0004141!5.62e-07!18;UBERON:0003084!5.62e-07!18;UBERON:0007005!5.62e-07!18;UBERON:0004139!5.62e-07!18;UBERON:0004291!5.62e-07!18;UBERON:0004121!7.57e-07!95;UBERON:0000924!7.57e-07!95;UBERON:0006601!7.57e-07!95;UBERON:0000479!8.61e-07!349;UBERON:0001017!8.83e-07!73
|tfbs_overrepresentation_for_novel_motifs=0.321524,1.23178,0.297937,0.360062,0.200163,0.373426,0.458558,0.124431,0.411053,1.12691,0.417132,0.447169,0.393382,1.18563,0.214197,0,0.656089,0.19356,0.113609,0.451901,0.26524,0.336916,0.469335,0.198877,0.304728,0.496413,1.16975,1.01819,0.238759,0.271461,0.379806,0.754912,2.38223,0.31333,0.214608,0.102262,0.541514,0.443753,0.166348,0.143746,0.196807,2.66022,0.0320468,0.215898,0.962788,0.349801,0.578773,0.407653,0.255625,0.677281,0.639101,0.522137,0.259389,0.894161,0.911367,1.20022,0.249055,0.435119,1.65728,0.47505,0.735292,0.531188,0.433822,0.628155,0.487593,0.667546,1.04613,1.3932,0.730718,1.24673,0.281085,0.404236,0.639498,0.944464,2.20686,0.623453,0.313198,0.567793,0.718494,0.268962,0.129727,2.72206,0.529804,0.119727,0.830765,3.45325,1.24521,0.572901,0.583509,1.55487,1.11522,0.835661,0.767462,0.205117,0.163126,0.149272,0.777003,0.770215,0.57902,0.0659594,0.184103,0.754637,0.87698,0.639679,0.638654,0.3842,0.696857,0.403887,0.273261,0.736223,0.315128,0.878738,0.26996,0.421988,1.12221,0.5687,2.27254,0.363536,0.657356,0.181004,0.949798,0.607824,0.498153,0.566919,1.17594,0.722111,0.466292,0.760818,1.04463,0.59809,0.86025,0.353344,1.01535,0.48999,1.14365,0.142597,0.329172,0.385921,1.09487,1.92247,1.5231,1.0508,0.509663,0.765172,0.632358,0.385031,1.42284,1.88287,1.58559,1.73501,2.01123,0.305197,0.895708,0.46758,0.489108,0.976367,0.523103,0.224422,0.319291,0.328917,1.1043,0.829923,0.722546,0.841258,0.629147,0.482049,0.18312,0.445669,0.809881
}}
}}

Revision as of 18:46, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:102697739..102697772,+p1@Higd1b
Mm9::chr11:77275827..77275923,+p3@Coro6
Mm9::chr17:43938862..43938873,+p9@Rcan2
Mm9::chr17:43938876..43938960,+p2@Rcan2
Mm9::chr2:55288799..55288810,+p6@Kcnj3
Mm9::chr4:128814103..128814120,+p4@Fndc5
Mm9::chr4:128814121..128814147,+p1@Fndc5
Mm9::chr4:128814164..128814185,+p3@Fndc5
Mm9::chr4:128814192..128814217,+p2@Fndc5
Mm9::chr9:121701596..121701608,-p2@Hhatl


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest1.55e-1492
regional part of nervous system6.50e-1154
neural tube7.88e-1052
neural rod7.88e-1052
future spinal cord7.88e-1052
neural keel7.88e-1052
multi-cellular organism9.26e-10333
anatomical conduit1.84e-09122
tube2.22e-09114
neurectoderm1.20e-0864
neural plate1.20e-0864
presumptive neural plate1.20e-0864
brain4.87e-0847
future brain4.87e-0847
ecto-epithelium5.97e-0873
regional part of brain1.32e-0746
primary circulatory organ5.62e-0718
heart5.62e-0718
primitive heart tube5.62e-0718
primary heart field5.62e-0718
anterior lateral plate mesoderm5.62e-0718
heart tube5.62e-0718
heart primordium5.62e-0718
cardiac mesoderm5.62e-0718
cardiogenic plate5.62e-0718
heart rudiment5.62e-0718
ectoderm-derived structure7.57e-0795
ectoderm7.57e-0795
presumptive ectoderm7.57e-0795
tissue8.61e-07349
central nervous system8.83e-0773


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}