FFCP PHASE1:Hg19::chr17:29335535..29335575,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:29335535..29335575,-|id=chr17:29335535..29335575,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002600;2.68e-21;2!CL:0002599;2.81e-11;1|ontology_enrichment_celltype_v019_2=CL:0002600,1.70e-21,2;CL:0002599,1.31e-11,1|ontology_enrichment_development_v019=UBERON:0010227;2.81e-11;1!UBERON:0005425;2.81e-11;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.16e-19!57;UBERON:0005068!2.16e-19!57;UBERON:0006241!2.16e-19!57;UBERON:0007135!2.16e-19!57;UBERON:0001017!1.24e-18!82;UBERON:0002616!1.25e-18!59;UBERON:0000955!3.16e-18!69;UBERON:0006238!3.16e-18!69;UBERON:0005743!7.64e-18!86;UBERON:0007023!6.46e-17!115;UBERON:0003075!6.66e-17!86;UBERON:0007284!6.66e-17!86;UBERON:0000073!4.42e-16!94;UBERON:0001016!4.42e-16!94;UBERON:0002346!2.81e-15!90;UBERON:0003080!3.05e-11!42;UBERON:0000153!6.77e-11!129;UBERON:0007811!6.77e-11!129;UBERON:0000033!1.21e-10!123;UBERON:0002780!1.63e-10!41;UBERON:0001890!1.63e-10!41;UBERON:0006240!1.63e-10!41;UBERON:0003076!2.44e-10!15;UBERON:0003057!2.44e-10!15;UBERON:0001893!4.89e-10!34;UBERON:0002020!5.58e-10!34;UBERON:0003528!5.58e-10!34;UBERON:0004121!8.67e-10!169;UBERON:0002791!1.75e-09!33;UBERON:0001869!2.94e-09!32;UBERON:0000924!4.62e-09!173;UBERON:0006601!4.62e-09!173;UBERON:0004732!8.09e-09!13;UBERON:0003056!1.41e-08!61;UBERON:0004733!6.36e-08!12;UBERON:0002028!6.36e-08!12;UBERON:0007277!6.36e-08!12;UBERON:0000956!1.41e-07!25;UBERON:0000203!1.41e-07!25;UBERON:0002619!2.60e-07!22;UBERON:0001950!3.17e-07!20;UBERON:0002298!9.38e-07!8|ontology_enrichment_uberon_v019=UBERON:0002079;2.81e-11;1!UBERON:0000941;2.81e-11;1!UBERON:0001785;2.81e-11;1!UBERON:0002464;2.81e-11;1!UBERON:0004904;2.81e-11;1!UBERON:0001021;2.81e-11;1|ontology_enrichment_uberon_v019_2=UBERON:0002079,2.42e-11,1;UBERON:0000941,2.68e-11,1;UBERON:0001785,2.68e-11,1;UBERON:0002464,2.68e-11,1;UBERON:0004904,2.68e-11,1;UBERON:0001021,2.68e-11,1;UBERON:0003902,2.68e-11,1;UBERON:0005425,2.68e-11,1;UBERON:0003126,8.86e-07,7;UBERON:0001005,8.86e-07,7|phase1_expression=0.363356758541113,0.428201047781966,0,0,0,0.872338524100369,0,0,0.261185628199839,0.245733936501509,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0.246242116153576,0.612002073732759,0.313454721478088,0.572471974262113,0.136874425072884,0,0.152826811495903,0,0,0,0,0,0,0,0,3.87336002901508,0,0,0,0,0,0.447830948479849,0,0.257575567634187,0,0,0,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0,0,0.212604299965044,0,0,0.150176892841506,0,0,0,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,0.569212969109448,0.587237189370939,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0.535081656179426,0,0,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0.665188192387692,0.263504357079378,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,1.14734648299525,0,0,0,0,0,0,0,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0,1.12606667884768,0,0,0.30648779579902,0,0,0,0.213557388818567,0.211931901159562,0,0,0,0,0,0.0974370051611986,0,0.184099797284599,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0.132529768321485,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.431255149719035,0.256686072559497,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0.356857977594324,0,0,0,2.27407504055985,0,0.664225598535437,0,0.260650843404249,0.195801157462741,0.686286847621712,0,0,0.213455115606889,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.256278298511402,0,0,0,0.308419387605311,0.355123450626254,0.246381468041427,0,0.116210378459959,0,0,0,0,0.182091168006717,0.131124414959424,0,0.0770153371044148,0,1.46139224653261,0.105551628892876,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0.103041011647722,0.824125183365091,0.907604499126468,0,0,0,0,0,0.460511024178389,0,0.214840489736547,0.435050081742686,0.170453254832202,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0.18532421910392,0,0.372158369359667,0.632758849437452,0.38126038784765,0.255897791311334,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0.202182481573316,0,0.421258456238981,1.95053495635836,0,0,0,0,0,0,0.66343897524122,0,1.73632660280006,5.9030527684197,0,0.30982349809975,0,0.14341135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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:29335535..29335575,- | |||
|id=chr17:29335535..29335575,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002600;2.68e-21;2!CL:0002599;2.81e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002600,1.70e-21,2;CL:0002599,1.31e-11,1 | |||
|ontology_enrichment_development_v019=UBERON:0010227;2.81e-11;1!UBERON:0005425;2.81e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.16e-19!57;UBERON:0005068!2.16e-19!57;UBERON:0006241!2.16e-19!57;UBERON:0007135!2.16e-19!57;UBERON:0001017!1.24e-18!82;UBERON:0002616!1.25e-18!59;UBERON:0000955!3.16e-18!69;UBERON:0006238!3.16e-18!69;UBERON:0005743!7.64e-18!86;UBERON:0007023!6.46e-17!115;UBERON:0003075!6.66e-17!86;UBERON:0007284!6.66e-17!86;UBERON:0000073!4.42e-16!94;UBERON:0001016!4.42e-16!94;UBERON:0002346!2.81e-15!90;UBERON:0003080!3.05e-11!42;UBERON:0000153!6.77e-11!129;UBERON:0007811!6.77e-11!129;UBERON:0000033!1.21e-10!123;UBERON:0002780!1.63e-10!41;UBERON:0001890!1.63e-10!41;UBERON:0006240!1.63e-10!41;UBERON:0003076!2.44e-10!15;UBERON:0003057!2.44e-10!15;UBERON:0001893!4.89e-10!34;UBERON:0002020!5.58e-10!34;UBERON:0003528!5.58e-10!34;UBERON:0004121!8.67e-10!169;UBERON:0002791!1.75e-09!33;UBERON:0001869!2.94e-09!32;UBERON:0000924!4.62e-09!173;UBERON:0006601!4.62e-09!173;UBERON:0004732!8.09e-09!13;UBERON:0003056!1.41e-08!61;UBERON:0004733!6.36e-08!12;UBERON:0002028!6.36e-08!12;UBERON:0007277!6.36e-08!12;UBERON:0000956!1.41e-07!25;UBERON:0000203!1.41e-07!25;UBERON:0002619!2.60e-07!22;UBERON:0001950!3.17e-07!20;UBERON:0002298!9.38e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002079;2.81e-11;1!UBERON:0000941;2.81e-11;1!UBERON:0001785;2.81e-11;1!UBERON:0002464;2.81e-11;1!UBERON:0004904;2.81e-11;1!UBERON:0001021;2.81e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002079,2.42e-11,1;UBERON:0000941,2.68e-11,1;UBERON:0001785,2.68e-11,1;UBERON:0002464,2.68e-11,1;UBERON:0004904,2.68e-11,1;UBERON:0001021,2.68e-11,1;UBERON:0003902,2.68e-11,1;UBERON:0005425,2.68e-11,1;UBERON:0003126,8.86e-07,7;UBERON:0001005,8.86e-07,7 | |||
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| |||
|short_description=p@chr17:29335535..29335575,- | |||
}} |
Revision as of 12:54, 11 September 2013
Short description: | p@chr17:29335535..29335575, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:29335535..29335575, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of trachea | 1.70e-21 | 2 |
smooth muscle cell of the esophagus | 1.31e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
left cardiac atrium | 2.42e-11 | 1 |
cranial nerve II | 2.68e-11 | 1 |
cranial nerve | 2.68e-11 | 1 |
nerve trunk | 2.68e-11 | 1 |
nerve connecting eye with brain | 2.68e-11 | 1 |
nerve | 2.68e-11 | 1 |
retinal neural layer | 2.68e-11 | 1 |
presumptive neural retina | 2.68e-11 | 1 |
trachea | 8.86e-07 | 7 |
respiratory airway | 8.86e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.