FFCP PHASE1:Mm9::chr10:118677159..118677186,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71902|HGNC=|MCL_coexpression_id=0|UniProt=Q6ZQ38|association_with_transcript=-48bp_to_ENSMUST00000020315,NM_027994,uc007hec.2_5end|description=CAGE_peak_2_at_Cand1_5end|id=chr10:118677159..118677186,-|ontology_enrichment_celltype=CL:0000117!1.51e-13!23;CL:0000337!1.51e-13!23;CL:0000540!3.04e-09!33;CL:0000047!3.04e-09!33;CL:0000031!3.04e-09!33;CL:0000404!3.04e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.10e-14,23;CL:0000337,1.10e-14,23;CL:0000540,3.31e-09,33;CL:0000047,3.31e-09,33;CL:0000031,3.31e-09,33;CL:0000404,3.31e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!3.61e-21!86;UBERON:0000153!4.50e-21!94;UBERON:0002346!1.68e-18!71;UBERON:0003075!1.68e-18!71;UBERON:0007284!1.68e-18!71;UBERON:0001049!3.21e-18!52;UBERON:0005068!3.21e-18!52;UBERON:0006241!3.21e-18!52;UBERON:0007135!3.21e-18!52;UBERON:0000955!2.31e-17!50;UBERON:0006238!2.31e-17!50;UBERON:0001017!2.46e-17!73;UBERON:0005743!2.46e-17!73;UBERON:0003056!2.54e-17!49;UBERON:0000033!5.31e-17!63;UBERON:0000073!8.65e-17!75;UBERON:0001016!8.65e-17!75;UBERON:0002616!9.83e-17!49;UBERON:0003080!3.28e-15!40;UBERON:0002020!3.76e-15!34;UBERON:0002780!1.41e-14!39;UBERON:0001890!1.41e-14!39;UBERON:0006240!1.41e-14!39;UBERON:0004121!1.15e-13!102;UBERON:0000924!1.15e-13!102;UBERON:0006601!1.15e-13!102;UBERON:0002791!2.80e-12!29;UBERON:0003528!2.80e-12!29;UBERON:0001893!2.80e-12!29;UBERON:0000956!1.33e-07!21;UBERON:0001869!1.33e-07!21;UBERON:0000203!1.33e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.00e-22,64;UBERON:0003075,5.00e-22,64;UBERON:0007284,5.00e-22,64;UBERON:0000073,3.07e-21,54;UBERON:0001049,1.31e-19,52;UBERON:0005068,1.31e-19,52;UBERON:0006241,1.31e-19,52;UBERON:0007135,1.31e-19,52;UBERON:0001017,2.85e-18,73;UBERON:0003056,2.99e-18,49;UBERON:0001016,1.39e-17,75;UBERON:0000955,1.35e-16,47;UBERON:0006238,1.35e-16,47;UBERON:0010371,4.12e-16,73;UBERON:0003080,6.25e-16,40;UBERON:0002616,6.29e-16,46;UBERON:0002020,8.01e-16,34;UBERON:0004121,2.22e-15,95;UBERON:0000924,2.22e-15,95;UBERON:0006601,2.22e-15,95;UBERON:0002780,3.05e-15,39;UBERON:0001890,3.05e-15,39;UBERON:0006240,3.05e-15,39;UBERON:0003528,1.04e-12,29;UBERON:0002791,1.04e-12,29;UBERON:0001893,1.04e-12,29;UBERON:0010314,9.97e-11,92;UBERON:0000956,1.16e-07,21;UBERON:0001869,1.16e-07,21;UBERON:0000203,1.16e-07,21;UBERON:0002420,9.22e-07,8;UBERON:0007245,9.22e-07,8;UBERON:0010009,9.22e-07,8;UBERON:0010011,9.22e-07,8;UBERON:0000454,9.22e-07,8|phase1_expression=0.960893082628764,1.04692622291808,0.454999239389536,0.60492842261366,0.500895729946347,0.671517087647559,0,2.06597317506522,1.83025338797167,2.10658073689794,1.54096171402954,2.95156988282745,1.54080656938085,2.01066925563694,1.66554880907831,0.607425802169478,0.699561878128147,2.36596624018678,1.23402990245165,1.27316895539409,15.818051968099,1.09220046320974,0.261199789138935,0.47997726838022,0.45881856213434,1.14846392823004,0,0.646413698057667,0.190023419456374,0.756090389279792,0.221730510655305,0.635030673459631,1.84519436275371,0,0,0.498703936075477,0,1.67412652294763,0,0.523523743973798,0.588231488031014,0.683045484958446,0.971020706062307,0.251793635951155,0.709638518536602,1.28482726513177,0,0.436050312760893,0.878744730937887,0.58328969722285,1.1198913730029,1.43752564364972,2.51673909086605,0.725362142011344,3.36093799142464,0.514518872071894,0,0.515672092277442,10.1158230429799,8.99284664762456,8.23980824558033,1.35537812827653,0,0,0,0,0.299600110518405,0,2.28117147078651,2.43010688997043,2.94454945891935,7.7125765789027,4.8591079009355,9.79926393719632,8.72193786265951,6.43453150627015,12.1127469099328,11.3641730895817,9.36999852863085,12.265424758908,12.2593442427229,11.4600941522487,6.70039197603314,7.87867654044352,8.09830713217094,8.2496003932627,8.54230084794618,16.2167517868012,0.530083353332288,1.51143120213571,0.579728977403356,0,0,0,0,0.448026887097336,1.68533304158102,0.340860645156116,0.259786004602869,1.06001872353102,1.12674735821344,0,2.54805239706646,0,0.865964164044856,0.253359865475099,2.02209778005913,2.96878087269556,2.07150306917737,1.03909497345377,1.56136794089522,0.608930956624282,0.461230994512117,1.80867168663147,1.64624189989987,0.879666139307728,2.96633961281249,0.578397427679647,1.76922110389975,0.323533699894818,0.220841518460394,0.484875253135222,1.86391761218122,2.34224637609238,3.14170060220183,0.766371165625774,0.359445373517761,0,0.508280908292259,11.2342979553617,9.60751265919116,21.4868942112998,5.73620256634512,6.13717097592793,7.48036960414416,10.058958310201,0.305518091550949,1.7416975885413,0.758168275301024,1.47309299120532,4.29397461776922,2.75882525320168,2.88099407688559,2.10986744970001,3.53789795586905,3.07472928683639,1.87403449119458,3.3631438196072,4.52692785158969,3.40390944302075,1.93546236580344,1.09597866213787,0.834141747676794,1.74126083261083,0,0.796137067273973,0,0,0.568326998791185,3.52113813310353,2.57978665979206,1.44049649168812,0.710234206755631,0.787056926989615,0.9256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| ||
|EntrezGene=71902 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q6ZQ38 | |||
|association_with_transcript=-48bp_to_ENSMUST00000020315,NM_027994,uc007hec.2_5end | |||
|description=CAGE_peak_2_at_Cand1_5end | |||
|id=chr10:118677159..118677186,- | |||
|ontology_enrichment_celltype=CL:0000117!1.51e-13!23;CL:0000337!1.51e-13!23;CL:0000540!3.04e-09!33;CL:0000047!3.04e-09!33;CL:0000031!3.04e-09!33;CL:0000404!3.04e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.10e-14,23;CL:0000337,1.10e-14,23;CL:0000540,3.31e-09,33;CL:0000047,3.31e-09,33;CL:0000031,3.31e-09,33;CL:0000404,3.31e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!3.61e-21!86;UBERON:0000153!4.50e-21!94;UBERON:0002346!1.68e-18!71;UBERON:0003075!1.68e-18!71;UBERON:0007284!1.68e-18!71;UBERON:0001049!3.21e-18!52;UBERON:0005068!3.21e-18!52;UBERON:0006241!3.21e-18!52;UBERON:0007135!3.21e-18!52;UBERON:0000955!2.31e-17!50;UBERON:0006238!2.31e-17!50;UBERON:0001017!2.46e-17!73;UBERON:0005743!2.46e-17!73;UBERON:0003056!2.54e-17!49;UBERON:0000033!5.31e-17!63;UBERON:0000073!8.65e-17!75;UBERON:0001016!8.65e-17!75;UBERON:0002616!9.83e-17!49;UBERON:0003080!3.28e-15!40;UBERON:0002020!3.76e-15!34;UBERON:0002780!1.41e-14!39;UBERON:0001890!1.41e-14!39;UBERON:0006240!1.41e-14!39;UBERON:0004121!1.15e-13!102;UBERON:0000924!1.15e-13!102;UBERON:0006601!1.15e-13!102;UBERON:0002791!2.80e-12!29;UBERON:0003528!2.80e-12!29;UBERON:0001893!2.80e-12!29;UBERON:0000956!1.33e-07!21;UBERON:0001869!1.33e-07!21;UBERON:0000203!1.33e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.00e-22,64;UBERON:0003075,5.00e-22,64;UBERON:0007284,5.00e-22,64;UBERON:0000073,3.07e-21,54;UBERON:0001049,1.31e-19,52;UBERON:0005068,1.31e-19,52;UBERON:0006241,1.31e-19,52;UBERON:0007135,1.31e-19,52;UBERON:0001017,2.85e-18,73;UBERON:0003056,2.99e-18,49;UBERON:0001016,1.39e-17,75;UBERON:0000955,1.35e-16,47;UBERON:0006238,1.35e-16,47;UBERON:0010371,4.12e-16,73;UBERON:0003080,6.25e-16,40;UBERON:0002616,6.29e-16,46;UBERON:0002020,8.01e-16,34;UBERON:0004121,2.22e-15,95;UBERON:0000924,2.22e-15,95;UBERON:0006601,2.22e-15,95;UBERON:0002780,3.05e-15,39;UBERON:0001890,3.05e-15,39;UBERON:0006240,3.05e-15,39;UBERON:0003528,1.04e-12,29;UBERON:0002791,1.04e-12,29;UBERON:0001893,1.04e-12,29;UBERON:0010314,9.97e-11,92;UBERON:0000956,1.16e-07,21;UBERON:0001869,1.16e-07,21;UBERON:0000203,1.16e-07,21;UBERON:0002420,9.22e-07,8;UBERON:0007245,9.22e-07,8;UBERON:0010009,9.22e-07,8;UBERON:0010011,9.22e-07,8;UBERON:0000454,9.22e-07,8 | |||
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| |||
|short_description=p2@Cand1 | |||
}} | |||
Revision as of 15:52, 12 September 2013
| Short description: | p2@Cand1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Cand1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:0 |
| Association with transcript: | -48bp_to_ENSMUST00000020315, NM_027994, uc007hec.2_5end |
| EntrezGene: | Cand1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 1.10e-14 | 23 |
| neuroblast (sensu Vertebrata) | 1.10e-14 | 23 |
| neuron | 3.31e-09 | 33 |
| neuronal stem cell | 3.31e-09 | 33 |
| neuroblast | 3.31e-09 | 33 |
| electrically signaling cell | 3.31e-09 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
