FFCP PHASE1:Mm9::chr10:42894259..42894282,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=109205|HGNC=|MCL_coexpression_id=2|UniProt=Q0P5V2|association_with_transcript=53bp_to_ENSMUST00000040275,NM_175407,uc007ezf.1,uc007ezg.1_5end|description=CAGE_peak_4_at_Sobp_5end|id=chr10:42894259..42894282,-|ontology_enrichment_celltype=CL:0000117!3.20e-13!23;CL:0000337!3.20e-13!23;CL:0000540!4.21e-11!33;CL:0000047!4.21e-11!33;CL:0000031!4.21e-11!33;CL:0000404!4.21e-11!33;CL:0000393!1.63e-08!39;CL:0000211!1.63e-08!39;CL:0000221!5.92e-08!44;CL:0000133!5.92e-08!44;CL:0002319!6.29e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,8.36e-17,23;CL:0000337,8.36e-17,23;CL:0000540,8.20e-13,33;CL:0000047,8.20e-13,33;CL:0000031,8.20e-13,33;CL:0000404,8.20e-13,33;CL:0000393,4.29e-10,39;CL:0000211,4.29e-10,39;CL:0002319,4.87e-08,43;CL:0000221,1.22e-07,44;CL:0000133,1.22e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.14e-23!73;UBERON:0005743!3.14e-23!73;UBERON:0001049!1.44e-22!52;UBERON:0005068!1.44e-22!52;UBERON:0006241!1.44e-22!52;UBERON:0007135!1.44e-22!52;UBERON:0000073!2.16e-22!75;UBERON:0001016!2.16e-22!75;UBERON:0000033!2.85e-22!63;UBERON:0002346!1.97e-21!71;UBERON:0003075!1.97e-21!71;UBERON:0007284!1.97e-21!71;UBERON:0000955!3.40e-21!50;UBERON:0006238!3.40e-21!50;UBERON:0004121!1.12e-20!102;UBERON:0000924!1.12e-20!102;UBERON:0006601!1.12e-20!102;UBERON:0002616!1.30e-20!49;UBERON:0002020!7.83e-19!34;UBERON:0003056!1.08e-18!49;UBERON:0003080!1.84e-17!40;UBERON:0002780!6.53e-17!39;UBERON:0001890!6.53e-17!39;UBERON:0006240!6.53e-17!39;UBERON:0002791!6.94e-16!29;UBERON:0003528!6.94e-16!29;UBERON:0001893!6.94e-16!29;UBERON:0000956!5.74e-12!21;UBERON:0001869!5.74e-12!21;UBERON:0000203!5.74e-12!21;UBERON:0000153!2.31e-11!94;UBERON:0007811!5.12e-11!86;UBERON:0002619!1.04e-09!17;UBERON:0002021!2.06e-08!10;UBERON:0000411!2.06e-08!10;UBERON:0001950!2.06e-08!10;UBERON:0000025!5.81e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.90e-26,54;UBERON:0001017,2.24e-25,73;UBERON:0001049,5.35e-25,52;UBERON:0005068,5.35e-25,52;UBERON:0006241,5.35e-25,52;UBERON:0007135,5.35e-25,52;UBERON:0002346,1.55e-24,64;UBERON:0003075,1.55e-24,64;UBERON:0007284,1.55e-24,64;UBERON:0001016,4.51e-24,75;UBERON:0002020,2.07e-23,34;UBERON:0004121,2.05e-22,95;UBERON:0000924,2.05e-22,95;UBERON:0006601,2.05e-22,95;UBERON:0010371,1.95e-21,73;UBERON:0000955,3.04e-21,47;UBERON:0006238,3.04e-21,47;UBERON:0002616,1.59e-20,46;UBERON:0003056,4.38e-20,49;UBERON:0003528,1.45e-19,29;UBERON:0002791,1.45e-19,29;UBERON:0001893,1.45e-19,29;UBERON:0003080,2.42e-19,40;UBERON:0002780,1.21e-18,39;UBERON:0001890,1.21e-18,39;UBERON:0006240,1.21e-18,39;UBERON:0010314,5.13e-18,92;UBERON:0000956,1.90e-14,21;UBERON:0001869,1.90e-14,21;UBERON:0000203,1.90e-14,21;UBERON:0002619,1.64e-11,17;UBERON:0002021,1.61e-10,10;UBERON:0000411,1.61e-10,10;UBERON:0001950,1.61e-10,10|phase1_expression=1.60148847104794,0,0,0,0,0,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.183546752161682,0.782391344348039,0.218025156380447,0.219686182734472,0.388859798148567,0.419959264876088,0,0,0,0,0,2.57880095944881,0,7.48570905180512,8.46385566835253,6.33831403506179,0.338844532069132,0.889294796111139,0,0,0,0,1.15265491596466,5.39185984004084,5.8052553482627,6.73039876324422,7.42692559449889,6.40518768759679,4.28717797252339,4.79227355091182,5.51531271966013,3.30347642998166,6.89511625660014,6.29786786350598,7.64940468835124,6.58711033937349,10.4182674111352,2.79182999001381,4.50210088025344,4.73674568108111,8.54422897873636,5.26775218956681,5.77838282058432,0.227178579999552,0.226714680320357,0.289864488701678,0,0,0,0,0,1.26399978118577,0.170430322578058,0.259786004602869,0,0.845060518660083,1.28326477414318,2.54805239706646,0,0,0,0,0.5709193985953,0.258937883647172,0.445326417194474,0,0.608930956624282,0.461230994512117,0.60289056221049,0.823120949949934,0.251333182659351,0,0.433798070759735,0,4.20593809863264,3.5334642953663,3.87900202508178,0,11.1256702864388,10.0534419270458,0.510914110417183,0,0,0,5.69204429738326,5.94750783664214,3.64397621127307,13.210648334613,14.5757810678288,4.57133698031032,6.32740925964255,0.305518091550949,0.995255764880744,0.252722758433675,1.89397670297827,0.260240885925407,0.919608417733892,1.44049703844279,1.65775299619287,2.9255694635071,3.71529788826064,1.40552586839593,4.13925393182425,0.215567992932842,0.756424320671277,1.05570674498369,1.7535658594206,1.11218899690239,2.43776516565517,0.61734640922383,0.398068533636986,0,0,0.284163499395593,0.414251545071004,0,0.36012412292203,0.946978942340841,0.983821158737019,0.462801338662135,1.39520366850245,1.07309360559848,1.40118410840603,0.822799249567402,1.31333971263276,2.26992666728396,1.90059983652932,1.3173006917463,1.07365135008297,15.5614561937454,17.0821656549612,0,0,0.213288250535234,0.696710015581316,0.77320476793256,0,0.22237804384487,0.190225626112559,0.949058123089023,0,0.754005626400808,0.1989564720411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| ||
|EntrezGene=109205 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=Q0P5V2 | |||
|association_with_transcript=53bp_to_ENSMUST00000040275,NM_175407,uc007ezf.1,uc007ezg.1_5end | |||
|description=CAGE_peak_4_at_Sobp_5end | |||
|id=chr10:42894259..42894282,- | |||
|ontology_enrichment_celltype=CL:0000117!3.20e-13!23;CL:0000337!3.20e-13!23;CL:0000540!4.21e-11!33;CL:0000047!4.21e-11!33;CL:0000031!4.21e-11!33;CL:0000404!4.21e-11!33;CL:0000393!1.63e-08!39;CL:0000211!1.63e-08!39;CL:0000221!5.92e-08!44;CL:0000133!5.92e-08!44;CL:0002319!6.29e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.36e-17,23;CL:0000337,8.36e-17,23;CL:0000540,8.20e-13,33;CL:0000047,8.20e-13,33;CL:0000031,8.20e-13,33;CL:0000404,8.20e-13,33;CL:0000393,4.29e-10,39;CL:0000211,4.29e-10,39;CL:0002319,4.87e-08,43;CL:0000221,1.22e-07,44;CL:0000133,1.22e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.14e-23!73;UBERON:0005743!3.14e-23!73;UBERON:0001049!1.44e-22!52;UBERON:0005068!1.44e-22!52;UBERON:0006241!1.44e-22!52;UBERON:0007135!1.44e-22!52;UBERON:0000073!2.16e-22!75;UBERON:0001016!2.16e-22!75;UBERON:0000033!2.85e-22!63;UBERON:0002346!1.97e-21!71;UBERON:0003075!1.97e-21!71;UBERON:0007284!1.97e-21!71;UBERON:0000955!3.40e-21!50;UBERON:0006238!3.40e-21!50;UBERON:0004121!1.12e-20!102;UBERON:0000924!1.12e-20!102;UBERON:0006601!1.12e-20!102;UBERON:0002616!1.30e-20!49;UBERON:0002020!7.83e-19!34;UBERON:0003056!1.08e-18!49;UBERON:0003080!1.84e-17!40;UBERON:0002780!6.53e-17!39;UBERON:0001890!6.53e-17!39;UBERON:0006240!6.53e-17!39;UBERON:0002791!6.94e-16!29;UBERON:0003528!6.94e-16!29;UBERON:0001893!6.94e-16!29;UBERON:0000956!5.74e-12!21;UBERON:0001869!5.74e-12!21;UBERON:0000203!5.74e-12!21;UBERON:0000153!2.31e-11!94;UBERON:0007811!5.12e-11!86;UBERON:0002619!1.04e-09!17;UBERON:0002021!2.06e-08!10;UBERON:0000411!2.06e-08!10;UBERON:0001950!2.06e-08!10;UBERON:0000025!5.81e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.90e-26,54;UBERON:0001017,2.24e-25,73;UBERON:0001049,5.35e-25,52;UBERON:0005068,5.35e-25,52;UBERON:0006241,5.35e-25,52;UBERON:0007135,5.35e-25,52;UBERON:0002346,1.55e-24,64;UBERON:0003075,1.55e-24,64;UBERON:0007284,1.55e-24,64;UBERON:0001016,4.51e-24,75;UBERON:0002020,2.07e-23,34;UBERON:0004121,2.05e-22,95;UBERON:0000924,2.05e-22,95;UBERON:0006601,2.05e-22,95;UBERON:0010371,1.95e-21,73;UBERON:0000955,3.04e-21,47;UBERON:0006238,3.04e-21,47;UBERON:0002616,1.59e-20,46;UBERON:0003056,4.38e-20,49;UBERON:0003528,1.45e-19,29;UBERON:0002791,1.45e-19,29;UBERON:0001893,1.45e-19,29;UBERON:0003080,2.42e-19,40;UBERON:0002780,1.21e-18,39;UBERON:0001890,1.21e-18,39;UBERON:0006240,1.21e-18,39;UBERON:0010314,5.13e-18,92;UBERON:0000956,1.90e-14,21;UBERON:0001869,1.90e-14,21;UBERON:0000203,1.90e-14,21;UBERON:0002619,1.64e-11,17;UBERON:0002021,1.61e-10,10;UBERON:0000411,1.61e-10,10;UBERON:0001950,1.61e-10,10 | |||
|phase1_expression=1.60148847104794,0,0,0,0,0,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.183546752161682,0.782391344348039,0.218025156380447,0.219686182734472,0.388859798148567,0.419959264876088,0,0,0,0,0,2.57880095944881,0,7.48570905180512,8.46385566835253,6.33831403506179,0.338844532069132,0.889294796111139,0,0,0,0,1.15265491596466,5.39185984004084,5.8052553482627,6.73039876324422,7.42692559449889,6.40518768759679,4.28717797252339,4.79227355091182,5.51531271966013,3.30347642998166,6.89511625660014,6.29786786350598,7.64940468835124,6.58711033937349,10.4182674111352,2.79182999001381,4.50210088025344,4.73674568108111,8.54422897873636,5.26775218956681,5.77838282058432,0.227178579999552,0.226714680320357,0.289864488701678,0,0,0,0,0,1.26399978118577,0.170430322578058,0.259786004602869,0,0.845060518660083,1.28326477414318,2.54805239706646,0,0,0,0,0.5709193985953,0.258937883647172,0.445326417194474,0,0.608930956624282,0.461230994512117,0.60289056221049,0.823120949949934,0.251333182659351,0,0.433798070759735,0,4.20593809863264,3.5334642953663,3.87900202508178,0,11.1256702864388,10.0534419270458,0.510914110417183,0,0,0,5.69204429738326,5.94750783664214,3.64397621127307,13.210648334613,14.5757810678288,4.57133698031032,6.32740925964255,0.305518091550949,0.995255764880744,0.252722758433675,1.89397670297827,0.260240885925407,0.919608417733892,1.44049703844279,1.65775299619287,2.9255694635071,3.71529788826064,1.40552586839593,4.13925393182425,0.215567992932842,0.756424320671277,1.05570674498369,1.7535658594206,1.11218899690239,2.43776516565517,0.61734640922383,0.398068533636986,0,0,0.284163499395593,0.414251545071004,0,0.36012412292203,0.946978942340841,0.983821158737019,0.462801338662135,1.39520366850245,1.07309360559848,1.40118410840603,0.822799249567402,1.31333971263276,2.26992666728396,1.90059983652932,1.3173006917463,1.07365135008297,15.5614561937454,17.0821656549612,0,0,0.213288250535234,0.696710015581316,0.77320476793256,0,0.22237804384487,0.190225626112559,0.949058123089023,0,0.754005626400808,0.198956472041151,0.779856348476481,0,0.432276099749388,0,0,0.456994050438915,1.1270773567308,0.407302655690628,0,0.350679099451593,0.442655759869801,0.147610147979602,0,0.123397163921801,0,0,0,0,0,0,0,0.287696137450811,0,0,1.43768206527355,0.372140947668503,0.312037673114561,0,0,0,0.369506380333209,0.189491411770485,0.325929952884052,0.169745085775188,0,0.167506257441816,0.238043640886014,0.390267295715598,0.472905432318573,0.221464689648775,0.478364305972461,0.327726629431476,0.172684981865896,0.289298117163023,0,0,0,0,4.81651769963376,3.7507739709505,0,4.79694761688309,0.315508219416257,1.17131623288992,0.430846795465598,0,0.668396022247182,0.283076530788832,1.61924280669958,1.16902343164525,1.58115111178609,5.78378369559253,0.851640511249612,0.534196811001766,1.14020871547503,0.659880491890142,0,0.242780636154981,0,0.754420319023592,0.295301892880773,0.614870295887855,0,0.363533729477506,0.712994756769443,0.316036757935816,0,0,1.70219802876894,0.720244376125241,0.905510786479282,0.857348140126369,1.24138163549592,1.42695054081656,1.48094118541909,1.522324745573,0.23467170806371,0,0,2.80306630000516,1.13025098687134,0.542816324353403,0.358117032009409,0.492422699235184,0,4.45020724825223,0,0,0,0.188368457004691,0,0,0,0,0.138199973804424,0,0.158167996790568,0.406638934253697,0.324016022465404,0.209088296014469,0.436725127492355,0.809186078308924,1.1571483801547,0.26175594198403,0.259229946583586,0,0,0.299033092087958,0.165458490457098,0.388902376688095,1.54991788173277,0.844780627453891,0.938857909166032,1.69265700297135,2.83120229949419,1.93267296660805,1.72818003754719,0.316011120628178,0.608175645870493,0.205421914329655,0.51968329191118,0.358053391334963,0,0,0.147689527174577,0,0,0,0,0,0,4.30787728868902,0,0,0,0.386379188064381,0.375364950902364,0.549454872801795,0.643105137237198,0,32.1908550291728,18.8733346967943,22.9158205375759,15.9823459579629,17.1270629942661,18.8848474347425,18.2256075062588,18.9134905354173,15.8599843144472,16.5683299760582,0.93408612825759,3.19219898720825,1.36586884603307,1.70174701947806,2.51535795153579,3.67687016900028,2.66696073361938,4.94484137373346,2.88827288632634,3.28506375292937,4.05566879824384,3.39527414494937,4.775716880964,3.84150914429216,3.4461281373368,4.28664322154766,3.1288768005111,2.12200142510076,5.35711671044299,2.64958056241915,2.05721551431249,3.37204031702741,1.1921809497366,3.92435324907287,3.76437521661322,3.29996970777538,2.56099162021882,3.6829759601298,3.25929873230068,2.24456908663095,1.54225523561426,4.43270170690036,2.86461730218783,4.02835787083512,2.12197272079256,6.49507502638659,1.40358965067245,3.00819475667618,2.67803664896381,2.20591419119516,2.55054619182464 | |||
|short_description=p4@Sobp | |||
}} |
Revision as of 16:45, 12 September 2013
Short description: | p4@Sobp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sobp_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 53bp_to_ENSMUST00000040275, NM_175407, uc007ezf.1, uc007ezg.1_5end |
EntrezGene: | Sobp |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.36e-17 | 23 |
neuroblast (sensu Vertebrata) | 8.36e-17 | 23 |
neuron | 8.20e-13 | 33 |
neuronal stem cell | 8.20e-13 | 33 |
neuroblast | 8.20e-13 | 33 |
electrically signaling cell | 8.20e-13 | 33 |
electrically responsive cell | 4.29e-10 | 39 |
electrically active cell | 4.29e-10 | 39 |
neural cell | 4.87e-08 | 43 |
ectodermal cell | 1.22e-07 | 44 |
neurectodermal cell | 1.22e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.90e-26 | 54 |
central nervous system | 2.24e-25 | 73 |
neural tube | 5.35e-25 | 52 |
neural rod | 5.35e-25 | 52 |
future spinal cord | 5.35e-25 | 52 |
neural keel | 5.35e-25 | 52 |
neurectoderm | 1.55e-24 | 64 |
neural plate | 1.55e-24 | 64 |
presumptive neural plate | 1.55e-24 | 64 |
nervous system | 4.51e-24 | 75 |
gray matter | 2.07e-23 | 34 |
ectoderm-derived structure | 2.05e-22 | 95 |
ectoderm | 2.05e-22 | 95 |
presumptive ectoderm | 2.05e-22 | 95 |
ecto-epithelium | 1.95e-21 | 73 |
brain | 3.04e-21 | 47 |
future brain | 3.04e-21 | 47 |
regional part of brain | 1.59e-20 | 46 |
pre-chordal neural plate | 4.38e-20 | 49 |
brain grey matter | 1.45e-19 | 29 |
regional part of telencephalon | 1.45e-19 | 29 |
telencephalon | 1.45e-19 | 29 |
anterior neural tube | 2.42e-19 | 40 |
regional part of forebrain | 1.21e-18 | 39 |
forebrain | 1.21e-18 | 39 |
future forebrain | 1.21e-18 | 39 |
structure with developmental contribution from neural crest | 5.13e-18 | 92 |
cerebral cortex | 1.90e-14 | 21 |
cerebral hemisphere | 1.90e-14 | 21 |
pallium | 1.90e-14 | 21 |
regional part of cerebral cortex | 1.64e-11 | 17 |
occipital lobe | 1.61e-10 | 10 |
visual cortex | 1.61e-10 | 10 |
neocortex | 1.61e-10 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.