FFCP PHASE1:Mm9::chr10:61573724..61573808,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=69894|HGNC=|MCL_coexpression_id=22|UniProt=Q9D882|association_with_transcript=0bp_to_ENSMUST00000125704,ENSMUST00000142796,NM_027251,uc007fgs.1,uc007fgt.1_5end|description=CAGE_peak_1_at_2010107G23Rik_5end|id=chr10:61573724..61573808,-|ontology_enrichment_celltype=CL:0000117!1.45e-15!23;CL:0000337!1.45e-15!23;CL:0000540!1.48e-12!33;CL:0000047!1.48e-12!33;CL:0000031!1.48e-12!33;CL:0000404!1.48e-12!33;CL:0000221!8.19e-12!44;CL:0000133!8.19e-12!44;CL:0002319!1.50e-11!43;CL:0002321!5.42e-09!70;CL:0000220!5.42e-09!70;CL:0000393!1.21e-08!39;CL:0000211!1.21e-08!39;CL:0000055!1.07e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,7.65e-16,23;CL:0000337,7.65e-16,23;CL:0000540,8.97e-13,33;CL:0000047,8.97e-13,33;CL:0000031,8.97e-13,33;CL:0000404,8.97e-13,33;CL:0000221,5.65e-12,44;CL:0000133,5.65e-12,44;CL:0002319,1.05e-11,43;CL:0002321,5.53e-09,70;CL:0000393,2.06e-08,39;CL:0000211,2.06e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.66e-25!73;UBERON:0005743!1.66e-25!73;UBERON:0000073!4.97e-24!75;UBERON:0001016!4.97e-24!75;UBERON:0000033!1.63e-23!63;UBERON:0001049!5.06e-23!52;UBERON:0005068!5.06e-23!52;UBERON:0006241!5.06e-23!52;UBERON:0007135!5.06e-23!52;UBERON:0004121!1.45e-22!102;UBERON:0000924!1.45e-22!102;UBERON:0006601!1.45e-22!102;UBERON:0000955!2.01e-21!50;UBERON:0006238!2.01e-21!50;UBERON:0002616!5.55e-21!49;UBERON:0002346!2.39e-20!71;UBERON:0003075!2.39e-20!71;UBERON:0007284!2.39e-20!71;UBERON:0002020!4.61e-20!34;UBERON:0003056!8.69e-19!49;UBERON:0003080!1.91e-17!40;UBERON:0002780!6.22e-17!39;UBERON:0001890!6.22e-17!39;UBERON:0006240!6.22e-17!39;UBERON:0002791!7.68e-17!29;UBERON:0003528!7.68e-17!29;UBERON:0001893!7.68e-17!29;UBERON:0000956!9.96e-12!21;UBERON:0001869!9.96e-12!21;UBERON:0000203!9.96e-12!21;UBERON:0000160!6.77e-10!43;UBERON:0007811!1.56e-09!86;UBERON:0002619!2.64e-09!17;UBERON:0000153!4.35e-08!94;UBERON:0005409!5.48e-07!59|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.52e-26,73;UBERON:0004121,1.46e-25,95;UBERON:0000924,1.46e-25,95;UBERON:0006601,1.46e-25,95;UBERON:0000073,8.73e-25,54;UBERON:0001016,1.99e-24,75;UBERON:0002346,2.01e-24,64;UBERON:0003075,2.01e-24,64;UBERON:0007284,2.01e-24,64;UBERON:0001049,1.89e-23,52;UBERON:0005068,1.89e-23,52;UBERON:0006241,1.89e-23,52;UBERON:0007135,1.89e-23,52;UBERON:0010371,2.39e-23,73;UBERON:0002020,1.97e-20,34;UBERON:0000955,3.27e-20,47;UBERON:0006238,3.27e-20,47;UBERON:0002616,9.06e-20,46;UBERON:0003056,3.94e-19,49;UBERON:0003080,9.24e-18,40;UBERON:0002780,3.07e-17,39;UBERON:0001890,3.07e-17,39;UBERON:0006240,3.07e-17,39;UBERON:0003528,3.81e-17,29;UBERON:0002791,3.81e-17,29;UBERON:0001893,3.81e-17,29;UBERON:0000956,6.25e-12,21;UBERON:0001869,6.25e-12,21;UBERON:0000203,6.25e-12,21;UBERON:0010314,4.30e-10,92;UBERON:0011216,1.44e-09,194;UBERON:0002619,1.85e-09,17;UBERON:0000160,9.97e-09,31;UBERON:0000344,8.09e-07,15|phase1_expression=4.32401887182944,11.5161884520989,11.8299802241279,9.67885476181856,8.01433167914156,12.4230661214798,7.70921713965235,0.129123323441576,0,0,0,0,0.171200729931206,0.0874204024189974,0,0.404950534779652,0.699561878128147,0.157731082679119,0.274228867211478,0,4.08207792725135,0,0.261199789138935,12.7993938234725,13.3057383018959,10.9104073181854,13.7843838770904,12.9282739611533,14.4417798786844,9.8291750606373,17.9601713630797,1.90509202037889,1.84519436275371,0,11.554064790051,8.81043620400009,12.2501613757421,0,0,0,0,0,0,0.881277725829041,1.92616169317078,0.367093504323363,7.04152209913235,4.36050312760893,5.71184075109627,5.44403717407994,3.21968769738334,4.31257693094915,0.167782606057736,0,0.336093799142464,0.257259436035947,0.85960031981627,1.03134418455488,45.3188872325499,55.0150618442914,50.0726808769882,1.35537812827653,3.55717918444456,0.449949858640699,0.988866362566974,0,5.09320187881288,11.1423308543251,22.5006458709397,31.7263955079473,29.4454945891935,21.7094748146891,27.8294361599033,29.8877550084488,31.3414690229633,37.6879702510109,12.1127469099328,17.3654779795855,16.8967186581868,54.7328094080304,67.5178809785783,56.2586440201301,24.8472869111229,22.5105044012672,22.0029476798607,20.0347438122094,25.7692742246376,36.9070902734095,0.37863096666592,1.5870027622425,2.02905142091174,0,2.03991400112325,1.07940638327563,3.89865850468601,0.896053774194671,3.5111105032938,0.681721290312231,1.55871602761721,1.7666978725517,7.60554466794075,0,0,0,7.79367747640371,7.34743609877786,7.07734223020697,3.4255163915718,0,3.85949561568544,1.21439728736295,0.913396434936424,1.15307748628029,1.80867168663147,1.41106448562846,2.01066546127481,0.988779870937496,0.433798070759735,0,0.161766849947409,0,0.969750506270444,3.72783522436244,24.59358694897,17.5935233723302,7.91916871146633,0.11981512450592,0,0,14.9790639404823,14.1825186873774,41.0889731409067,21.2065670634577,11.2514801225345,14.7529511637288,13.6282660976916,2.64782346010822,0.870848794270651,5.05445516867349,10.9429765060966,4.16385417480652,8.5063778640385,5.22180176435513,6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| ||
|EntrezGene=69894 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q9D882 | |||
|association_with_transcript=0bp_to_ENSMUST00000125704,ENSMUST00000142796,NM_027251,uc007fgs.1,uc007fgt.1_5end | |||
|description=CAGE_peak_1_at_2010107G23Rik_5end | |||
|id=chr10:61573724..61573808,- | |||
|ontology_enrichment_celltype=CL:0000117!1.45e-15!23;CL:0000337!1.45e-15!23;CL:0000540!1.48e-12!33;CL:0000047!1.48e-12!33;CL:0000031!1.48e-12!33;CL:0000404!1.48e-12!33;CL:0000221!8.19e-12!44;CL:0000133!8.19e-12!44;CL:0002319!1.50e-11!43;CL:0002321!5.42e-09!70;CL:0000220!5.42e-09!70;CL:0000393!1.21e-08!39;CL:0000211!1.21e-08!39;CL:0000055!1.07e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.65e-16,23;CL:0000337,7.65e-16,23;CL:0000540,8.97e-13,33;CL:0000047,8.97e-13,33;CL:0000031,8.97e-13,33;CL:0000404,8.97e-13,33;CL:0000221,5.65e-12,44;CL:0000133,5.65e-12,44;CL:0002319,1.05e-11,43;CL:0002321,5.53e-09,70;CL:0000393,2.06e-08,39;CL:0000211,2.06e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.66e-25!73;UBERON:0005743!1.66e-25!73;UBERON:0000073!4.97e-24!75;UBERON:0001016!4.97e-24!75;UBERON:0000033!1.63e-23!63;UBERON:0001049!5.06e-23!52;UBERON:0005068!5.06e-23!52;UBERON:0006241!5.06e-23!52;UBERON:0007135!5.06e-23!52;UBERON:0004121!1.45e-22!102;UBERON:0000924!1.45e-22!102;UBERON:0006601!1.45e-22!102;UBERON:0000955!2.01e-21!50;UBERON:0006238!2.01e-21!50;UBERON:0002616!5.55e-21!49;UBERON:0002346!2.39e-20!71;UBERON:0003075!2.39e-20!71;UBERON:0007284!2.39e-20!71;UBERON:0002020!4.61e-20!34;UBERON:0003056!8.69e-19!49;UBERON:0003080!1.91e-17!40;UBERON:0002780!6.22e-17!39;UBERON:0001890!6.22e-17!39;UBERON:0006240!6.22e-17!39;UBERON:0002791!7.68e-17!29;UBERON:0003528!7.68e-17!29;UBERON:0001893!7.68e-17!29;UBERON:0000956!9.96e-12!21;UBERON:0001869!9.96e-12!21;UBERON:0000203!9.96e-12!21;UBERON:0000160!6.77e-10!43;UBERON:0007811!1.56e-09!86;UBERON:0002619!2.64e-09!17;UBERON:0000153!4.35e-08!94;UBERON:0005409!5.48e-07!59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.52e-26,73;UBERON:0004121,1.46e-25,95;UBERON:0000924,1.46e-25,95;UBERON:0006601,1.46e-25,95;UBERON:0000073,8.73e-25,54;UBERON:0001016,1.99e-24,75;UBERON:0002346,2.01e-24,64;UBERON:0003075,2.01e-24,64;UBERON:0007284,2.01e-24,64;UBERON:0001049,1.89e-23,52;UBERON:0005068,1.89e-23,52;UBERON:0006241,1.89e-23,52;UBERON:0007135,1.89e-23,52;UBERON:0010371,2.39e-23,73;UBERON:0002020,1.97e-20,34;UBERON:0000955,3.27e-20,47;UBERON:0006238,3.27e-20,47;UBERON:0002616,9.06e-20,46;UBERON:0003056,3.94e-19,49;UBERON:0003080,9.24e-18,40;UBERON:0002780,3.07e-17,39;UBERON:0001890,3.07e-17,39;UBERON:0006240,3.07e-17,39;UBERON:0003528,3.81e-17,29;UBERON:0002791,3.81e-17,29;UBERON:0001893,3.81e-17,29;UBERON:0000956,6.25e-12,21;UBERON:0001869,6.25e-12,21;UBERON:0000203,6.25e-12,21;UBERON:0010314,4.30e-10,92;UBERON:0011216,1.44e-09,194;UBERON:0002619,1.85e-09,17;UBERON:0000160,9.97e-09,31;UBERON:0000344,8.09e-07,15 | |||
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| |||
|short_description=p1@2010107G23Rik | |||
}} |
Revision as of 17:04, 12 September 2013
Short description: | p1@2010107G23Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_2010107G23Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000125704, ENSMUST00000142796, NM_027251, uc007fgs.1, uc007fgt.1_5end |
EntrezGene: | 2010107G23Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.65e-16 | 23 |
neuroblast (sensu Vertebrata) | 7.65e-16 | 23 |
neuron | 8.97e-13 | 33 |
neuronal stem cell | 8.97e-13 | 33 |
neuroblast | 8.97e-13 | 33 |
electrically signaling cell | 8.97e-13 | 33 |
ectodermal cell | 5.65e-12 | 44 |
neurectodermal cell | 5.65e-12 | 44 |
neural cell | 1.05e-11 | 43 |
embryonic cell | 5.53e-09 | 70 |
electrically responsive cell | 2.06e-08 | 39 |
electrically active cell | 2.06e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.52e-26 | 73 |
ectoderm-derived structure | 1.46e-25 | 95 |
ectoderm | 1.46e-25 | 95 |
presumptive ectoderm | 1.46e-25 | 95 |
regional part of nervous system | 8.73e-25 | 54 |
nervous system | 1.99e-24 | 75 |
neurectoderm | 2.01e-24 | 64 |
neural plate | 2.01e-24 | 64 |
presumptive neural plate | 2.01e-24 | 64 |
neural tube | 1.89e-23 | 52 |
neural rod | 1.89e-23 | 52 |
future spinal cord | 1.89e-23 | 52 |
neural keel | 1.89e-23 | 52 |
ecto-epithelium | 2.39e-23 | 73 |
gray matter | 1.97e-20 | 34 |
brain | 3.27e-20 | 47 |
future brain | 3.27e-20 | 47 |
regional part of brain | 9.06e-20 | 46 |
pre-chordal neural plate | 3.94e-19 | 49 |
anterior neural tube | 9.24e-18 | 40 |
regional part of forebrain | 3.07e-17 | 39 |
forebrain | 3.07e-17 | 39 |
future forebrain | 3.07e-17 | 39 |
brain grey matter | 3.81e-17 | 29 |
regional part of telencephalon | 3.81e-17 | 29 |
telencephalon | 3.81e-17 | 29 |
cerebral cortex | 6.25e-12 | 21 |
cerebral hemisphere | 6.25e-12 | 21 |
pallium | 6.25e-12 | 21 |
structure with developmental contribution from neural crest | 4.30e-10 | 92 |
organ system subdivision | 1.44e-09 | 194 |
regional part of cerebral cortex | 1.85e-09 | 17 |
intestine | 9.97e-09 | 31 |
mucosa | 8.09e-07 | 15 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.