FFCP PHASE1:Mm9::chr10:81090436..81090487,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=13|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:81090436..81090487,+|id=chr10:81090436..81090487,+|ontology_enrichment_celltype=CL:0000117!3.00e-10!23;CL:0000337!3.00e-10!23;CL:0000540!8.44e-10!33;CL:0000047!8.44e-10!33;CL:0000031!8.44e-10!33;CL:0000404!8.44e-10!33;CL:0000393!5.75e-09!39;CL:0000211!5.75e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.78e-11,23;CL:0000337,4.78e-11,23;CL:0000540,1.32e-10,33;CL:0000047,1.32e-10,33;CL:0000031,1.32e-10,33;CL:0000404,1.32e-10,33;CL:0000393,6.67e-10,39;CL:0000211,6.67e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.16e-22!73;UBERON:0005743!3.16e-22!73;UBERON:0001049!8.67e-21!52;UBERON:0005068!8.67e-21!52;UBERON:0006241!8.67e-21!52;UBERON:0007135!8.67e-21!52;UBERON:0002346!1.89e-20!71;UBERON:0003075!1.89e-20!71;UBERON:0007284!1.89e-20!71;UBERON:0000073!2.18e-20!75;UBERON:0001016!2.18e-20!75;UBERON:0000955!2.94e-19!50;UBERON:0006238!2.94e-19!50;UBERON:0002616!1.18e-18!49;UBERON:0000033!2.11e-18!63;UBERON:0003056!4.03e-18!49;UBERON:0003080!5.39e-17!40;UBERON:0004121!1.45e-16!102;UBERON:0000924!1.45e-16!102;UBERON:0006601!1.45e-16!102;UBERON:0002780!2.00e-16!39;UBERON:0001890!2.00e-16!39;UBERON:0006240!2.00e-16!39;UBERON:0000153!4.37e-16!94;UBERON:0007811!1.26e-15!86;UBERON:0002020!7.91e-15!34;UBERON:0002791!1.45e-12!29;UBERON:0003528!1.45e-12!29;UBERON:0001893!1.45e-12!29;UBERON:0000956!4.30e-09!21;UBERON:0001869!4.30e-09!21;UBERON:0000203!4.30e-09!21;UBERON:0002619!3.15e-07!17;UBERON:0002021!6.44e-07!10;UBERON:0000411!6.44e-07!10;UBERON:0001950!6.44e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.93e-24,64;UBERON:0003075,1.93e-24,64;UBERON:0007284,1.93e-24,64;UBERON:0001017,1.16e-23,73;UBERON:0000073,1.09e-22,54;UBERON:0001049,2.45e-22,52;UBERON:0005068,2.45e-22,52;UBERON:0006241,2.45e-22,52;UBERON:0007135,2.45e-22,52;UBERON:0001016,4.14e-22,75;UBERON:0010371,2.09e-20,73;UBERON:0000955,2.33e-20,47;UBERON:0006238,2.33e-20,47;UBERON:0002616,1.06e-19,46;UBERON:0004121,1.25e-19,95;UBERON:0000924,1.25e-19,95;UBERON:0006601,1.25e-19,95;UBERON:0003056,3.49e-19,49;UBERON:0003080,3.59e-18,40;UBERON:0002780,1.49e-17,39;UBERON:0001890,1.49e-17,39;UBERON:0006240,1.49e-17,39;UBERON:0002020,8.33e-16,34;UBERON:0003528,2.44e-13,29;UBERON:0002791,2.44e-13,29;UBERON:0001893,2.44e-13,29;UBERON:0010314,1.14e-10,92;UBERON:0000956,1.48e-09,21;UBERON:0001869,1.48e-09,21;UBERON:0000203,1.48e-09,21;UBERON:0002619,1.57e-07,17;UBERON:0002021,2.06e-07,10;UBERON:0000411,2.06e-07,10;UBERON:0001950,2.06e-07,10|phase1_expression=1.60148847104794,0,0,0.60492842261366,0.500895729946347,0.503637815735669,0.467225281191051,2.58246646883153,0.703943610758334,1.17032263160997,0.68487187290202,1.51567102091139,2.73921167889929,2.09808965805594,0,1.01237633694913,1.39912375625629,0.946386496074713,0.274228867211478,0,1.10556277196391,1.09220046320974,1.56719873483361,0.319984845586813,0.22940928106717,0,0,0.215471232685889,0,0,0.221730510655305,5.71527606113668,3.07532393792285,0,0,0.332469290716985,0.408338712524738,0,0,0.523523743973798,0.588231488031014,0,0.485510353031154,3.65100772129174,2.12891555560981,2.9367480345869,2.34717403304412,0.436050312760893,0.219686182734472,0.972149495371417,0.979904951377538,1.43752564364972,1.17447824240415,4.35217285206807,4.7053131879945,0,1.14613375975503,0.515672092277442,4.24864567805155,6.34789175126439,9.50747105259269,1.35537812827653,0.889294796111139,0.899899717281399,0,0,0.299600110518405,1.53687322128622,4.56234294157302,3.24014251996058,3.57552434297349,3.71346279724945,3.3130281142742,3.79721477566358,3.73797336971122,2.75765635983006,3.30347642998166,1.65993539510744,1.53606533256243,8.44072241473241,5.48925861614458,7.29278718779464,2.23346399201105,2.8138130501584,2.59757021220577,3.83017161115768,5.55249555116501,3.16879057903011,0.075726193333184,0.226714680320357,4.63783181922684,0,1.3599426674155,0,0,0,0.280888840263504,3.2381761289831,1.03914401841148,3.18005617059306,1.40843419776681,0,5.09610479413291,0,0.865964164044856,0.506719730950197,1.51657333504435,0,0.517875767294343,0.890652834388949,1.04091196059682,1.52232739156071,0.922461989024234,0.904335843315735,1.64624189989987,0.376999773989026,2.22475470960936,0.433798070759735,0.884610551949874,0.485300549842228,1.10420759230197,0.969750506270444,1.86391761218122,5.5628351432194,5.23616767033638,1.02182822083437,0.599075622529601,0.599902730993408,0.762421362438388,4.6435098215495,2.74500361691176,10.3036568732549,6.25767552692195,3.3243009452943,2.0778804455956,5.353961681236,2.24046600470696,0.497627882440372,1.76905930903572,1.26265113531884,1.56144531555244,0.689706313300419,1.44049703844279,2.41127708537144,3.87808045162569,4.86832137082429,3.37326208415024,3.88055056108524,0.431135985865684,2.26927296201383,2.99116911078713,1.97276159184817,3.33656699070717,3.1342694986995,1.23469281844766,1.99034266818493,0,0.51469581422943,0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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:81090436..81090487,+ | |||
|id=chr10:81090436..81090487,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.00e-10!23;CL:0000337!3.00e-10!23;CL:0000540!8.44e-10!33;CL:0000047!8.44e-10!33;CL:0000031!8.44e-10!33;CL:0000404!8.44e-10!33;CL:0000393!5.75e-09!39;CL:0000211!5.75e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.78e-11,23;CL:0000337,4.78e-11,23;CL:0000540,1.32e-10,33;CL:0000047,1.32e-10,33;CL:0000031,1.32e-10,33;CL:0000404,1.32e-10,33;CL:0000393,6.67e-10,39;CL:0000211,6.67e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.16e-22!73;UBERON:0005743!3.16e-22!73;UBERON:0001049!8.67e-21!52;UBERON:0005068!8.67e-21!52;UBERON:0006241!8.67e-21!52;UBERON:0007135!8.67e-21!52;UBERON:0002346!1.89e-20!71;UBERON:0003075!1.89e-20!71;UBERON:0007284!1.89e-20!71;UBERON:0000073!2.18e-20!75;UBERON:0001016!2.18e-20!75;UBERON:0000955!2.94e-19!50;UBERON:0006238!2.94e-19!50;UBERON:0002616!1.18e-18!49;UBERON:0000033!2.11e-18!63;UBERON:0003056!4.03e-18!49;UBERON:0003080!5.39e-17!40;UBERON:0004121!1.45e-16!102;UBERON:0000924!1.45e-16!102;UBERON:0006601!1.45e-16!102;UBERON:0002780!2.00e-16!39;UBERON:0001890!2.00e-16!39;UBERON:0006240!2.00e-16!39;UBERON:0000153!4.37e-16!94;UBERON:0007811!1.26e-15!86;UBERON:0002020!7.91e-15!34;UBERON:0002791!1.45e-12!29;UBERON:0003528!1.45e-12!29;UBERON:0001893!1.45e-12!29;UBERON:0000956!4.30e-09!21;UBERON:0001869!4.30e-09!21;UBERON:0000203!4.30e-09!21;UBERON:0002619!3.15e-07!17;UBERON:0002021!6.44e-07!10;UBERON:0000411!6.44e-07!10;UBERON:0001950!6.44e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.93e-24,64;UBERON:0003075,1.93e-24,64;UBERON:0007284,1.93e-24,64;UBERON:0001017,1.16e-23,73;UBERON:0000073,1.09e-22,54;UBERON:0001049,2.45e-22,52;UBERON:0005068,2.45e-22,52;UBERON:0006241,2.45e-22,52;UBERON:0007135,2.45e-22,52;UBERON:0001016,4.14e-22,75;UBERON:0010371,2.09e-20,73;UBERON:0000955,2.33e-20,47;UBERON:0006238,2.33e-20,47;UBERON:0002616,1.06e-19,46;UBERON:0004121,1.25e-19,95;UBERON:0000924,1.25e-19,95;UBERON:0006601,1.25e-19,95;UBERON:0003056,3.49e-19,49;UBERON:0003080,3.59e-18,40;UBERON:0002780,1.49e-17,39;UBERON:0001890,1.49e-17,39;UBERON:0006240,1.49e-17,39;UBERON:0002020,8.33e-16,34;UBERON:0003528,2.44e-13,29;UBERON:0002791,2.44e-13,29;UBERON:0001893,2.44e-13,29;UBERON:0010314,1.14e-10,92;UBERON:0000956,1.48e-09,21;UBERON:0001869,1.48e-09,21;UBERON:0000203,1.48e-09,21;UBERON:0002619,1.57e-07,17;UBERON:0002021,2.06e-07,10;UBERON:0000411,2.06e-07,10;UBERON:0001950,2.06e-07,10 | |||
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| |||
|short_description=p@chr10:81090436..81090487,+ | |||
}} |
Revision as of 17:45, 12 September 2013
Short description: | p@chr10:81090436..81090487, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:81090436..81090487, + |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.78e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.78e-11 | 23 |
neuron | 1.32e-10 | 33 |
neuronal stem cell | 1.32e-10 | 33 |
neuroblast | 1.32e-10 | 33 |
electrically signaling cell | 1.32e-10 | 33 |
electrically responsive cell | 6.67e-10 | 39 |
electrically active cell | 6.67e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.93e-24 | 64 |
neural plate | 1.93e-24 | 64 |
presumptive neural plate | 1.93e-24 | 64 |
central nervous system | 1.16e-23 | 73 |
regional part of nervous system | 1.09e-22 | 54 |
neural tube | 2.45e-22 | 52 |
neural rod | 2.45e-22 | 52 |
future spinal cord | 2.45e-22 | 52 |
neural keel | 2.45e-22 | 52 |
nervous system | 4.14e-22 | 75 |
ecto-epithelium | 2.09e-20 | 73 |
brain | 2.33e-20 | 47 |
future brain | 2.33e-20 | 47 |
regional part of brain | 1.06e-19 | 46 |
ectoderm-derived structure | 1.25e-19 | 95 |
ectoderm | 1.25e-19 | 95 |
presumptive ectoderm | 1.25e-19 | 95 |
pre-chordal neural plate | 3.49e-19 | 49 |
anterior neural tube | 3.59e-18 | 40 |
regional part of forebrain | 1.49e-17 | 39 |
forebrain | 1.49e-17 | 39 |
future forebrain | 1.49e-17 | 39 |
gray matter | 8.33e-16 | 34 |
brain grey matter | 2.44e-13 | 29 |
regional part of telencephalon | 2.44e-13 | 29 |
telencephalon | 2.44e-13 | 29 |
structure with developmental contribution from neural crest | 1.14e-10 | 92 |
cerebral cortex | 1.48e-09 | 21 |
cerebral hemisphere | 1.48e-09 | 21 |
pallium | 1.48e-09 | 21 |
regional part of cerebral cortex | 1.57e-07 | 17 |
occipital lobe | 2.06e-07 | 10 |
visual cortex | 2.06e-07 | 10 |
neocortex | 2.06e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.