FFCP PHASE1:Hg19::chr2:242577097..242577116,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23192|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20790|TSSclassifier=S|UniProt=F8WD71,C9J1C1,F5H7P2|association_with_transcript=0bp_to_ENST00000396411,ENST00000419606,ENST00000465399,ENST00000468018,ENST00000474739,ENST00000475195,ENST00000479554,ENST00000482507_5end|description=CAGE_peak_1_at_ATG4B_5end|id=chr2:242577097..242577116,+|ontology_enrichment_celltype=CL:0002057!1.61e-14!42;CL:0000860!2.47e-11!45;CL:0000766!6.35e-08!76|ontology_enrichment_celltype_v019=CL:0000860;1.10e-10;33!CL:0002057;1.10e-10;33!CL:0000473;1.89e-07;39!CL:0000234;1.89e-07;39|ontology_enrichment_celltype_v019_2=CL:0000860,1.61e-14,42;CL:0002057,1.61e-14,42;CL:0000473,1.68e-12,48;CL:0000234,1.68e-12,48;CL:0000766,7.59e-10,72;CL:0002009,4.24e-08,61;CL:0002194,1.29e-07,59;CL:0000576,1.29e-07,59;CL:0000040,1.29e-07,59;CL:0000559,1.29e-07,59;CL:0000557,1.60e-07,67;CL:0000839,2.52e-07,66|ontology_enrichment_development_v019=CL:0002057;1.12e-10;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.63e-13!57;UBERON:0005068!1.63e-13!57;UBERON:0006241!1.63e-13!57;UBERON:0007135!1.63e-13!57;UBERON:0000025!6.90e-13!194;UBERON:0003075!3.14e-11!86;UBERON:0007284!3.14e-11!86;UBERON:0002616!5.06e-11!59;UBERON:0002346!1.00e-10!90;UBERON:0005743!7.49e-10!86;UBERON:0001017!8.55e-10!82;UBERON:0000955!2.00e-09!69;UBERON:0006238!2.00e-09!69;UBERON:0002780!2.63e-09!41;UBERON:0001890!2.63e-09!41;UBERON:0006240!2.63e-09!41;UBERON:0003080!2.79e-09!42;UBERON:0000073!4.13e-09!94;UBERON:0001016!4.13e-09!94;UBERON:0003056!6.04e-09!61;UBERON:0003081!1.92e-07!216;UBERON:0004111!4.01e-07!241;UBERON:0002791!4.34e-07!33;UBERON:0001893!4.45e-07!34;UBERON:0002020!5.29e-07!34;UBERON:0003528!5.29e-07!34|ontology_enrichment_uberon_v019=UBERON:0000073;8.64e-08;53!UBERON:0002616;8.64e-08;53!UBERON:0002780;3.66e-07;41!UBERON:0001890;3.66e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.51e-13,56;UBERON:0005068,1.51e-13,56;UBERON:0006241,1.51e-13,56;UBERON:0007135,1.51e-13,56;UBERON:0000073,5.61e-13,53;UBERON:0002616,5.61e-13,53;UBERON:0000025,9.47e-13,192;UBERON:0003075,1.62e-11,82;UBERON:0007284,1.62e-11,82;UBERON:0002346,5.63e-11,86;UBERON:0001017,9.01e-10,81;UBERON:0000955,2.07e-09,68;UBERON:0006238,2.07e-09,68;UBERON:0002780,2.63e-09,41;UBERON:0001890,2.63e-09,41;UBERON:0003080,2.63e-09,41;UBERON:0006240,2.63e-09,41;UBERON:0001016,5.40e-09,89;UBERON:0003056,5.69e-09,61;UBERON:0003081,1.33e-07,203;UBERON:0004111,4.39e-07,240;UBERON:0001893,4.45e-07,34;UBERON:0010371,5.17e-07,104;UBERON:0003528,5.29e-07,34;UBERON:0002020,5.29e-07,34;UBERON:0002791,7.21e-07,32|phase1_expression=11.082381135504,7.06531728840244,8.88012745804618,21.0153926541574,18.3254048715188,22.6808016266096,17.7309914717817,13.2661173419635,10.7086107561934,20.6416506661267,69.0823156292703,16.8199856540233,18.9912224324487,11.3865044723243,16.5698687863958,18.1527789541979,19.2862248967673,21.9093027116212,12.6862527685532,32.0114750999649,34.0681154377902,26.3301966041594,16.0292152793392,11.0868284309036,16.9482563452984,9.32243550125005,9.03106483949403,7.9497889126816,22.4217637803875,19.1914699048606,23.6868668673596,27.5826367343678,20.482002476921,32.5383528946773,11.6975472876255,18.19766175839,10.5696158160545,40.4416648228271,35.6969116496852,28.6454349344924,10.9718582377563,6.80176698639857,11.8484761111726,27.6256653681173,27.2070679455943,21.10481332334,26.9617682810594,23.8477375052659,46.4559556342655,24.7415457397049,16.1381245113333,23.1752585290814,32.7508396699788,33.565203546359,47.3992703080196,23.7185347823682,31.3842072566523,26.2926476800749,26.3232147438976,20.53945773287,44.1142616801338,11.8746468067218,21.143147707893,20.885012776102,26.9894591924583,22.6954089876456,15.5705562248894,22.8636285383636,22.4237654920687,21.7188844705117,16.9511860737343,28.72565560703,21.2029799585393,22.3930603490658,20.1974084966791,22.6431337149046,19.3205245571972,22.3763570333844,23.7873868311679,17.3857773682162,24.6656679726872,21.9196984517561,10.5597746676794,11.4689108365048,9.7846017924991,9.38806489646316,8.80871171479227,13.2193061189531,15.8650769468367,15.2648600725658,16.507176104174,19.9660644386119,15.2909291250092,21.1474125726441,32.5094966529291,10.5353633910031,11.6058764367162,9.82526906872912,10.6912779479745,14.3780386035983,10.7554347989085,13.2565385605725,11.6896037044747,15.8202848776946,12.668054021418,14.8427709371026,18.143858872256,6.78883994546078,11.0550445425897,13.8127839867088,16.0283010315792,11.5921234294021,8.74890722656157,14.4472047168445,21.9524599990451,12.9172650675225,11.1133943144557,11.6833331464094,18.7234572094432,5.41561204350964,8.46408490013344,8.55406840003537,16.2621128603995,12.7986611154418,3.74792179657038,8.99753557767264,9.85353596305256,14.7172922554055,13.1045695933919,14.7720891960455,17.0664806419773,10.0605128955545,11.7633556896048,11.2046137239216,16.042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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23192 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20790 | |||
|TSSclassifier=S | |||
|UniProt=F8WD71,C9J1C1,F5H7P2 | |||
|association_with_transcript=0bp_to_ENST00000396411,ENST00000419606,ENST00000465399,ENST00000468018,ENST00000474739,ENST00000475195,ENST00000479554,ENST00000482507_5end | |||
|description=CAGE_peak_1_at_ATG4B_5end | |||
|id=chr2:242577097..242577116,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.61e-14!42;CL:0000860!2.47e-11!45;CL:0000766!6.35e-08!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.10e-10;33!CL:0002057;1.10e-10;33!CL:0000473;1.89e-07;39!CL:0000234;1.89e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.61e-14,42;CL:0002057,1.61e-14,42;CL:0000473,1.68e-12,48;CL:0000234,1.68e-12,48;CL:0000766,7.59e-10,72;CL:0002009,4.24e-08,61;CL:0002194,1.29e-07,59;CL:0000576,1.29e-07,59;CL:0000040,1.29e-07,59;CL:0000559,1.29e-07,59;CL:0000557,1.60e-07,67;CL:0000839,2.52e-07,66 | |||
|ontology_enrichment_development_v019=CL:0002057;1.12e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.63e-13!57;UBERON:0005068!1.63e-13!57;UBERON:0006241!1.63e-13!57;UBERON:0007135!1.63e-13!57;UBERON:0000025!6.90e-13!194;UBERON:0003075!3.14e-11!86;UBERON:0007284!3.14e-11!86;UBERON:0002616!5.06e-11!59;UBERON:0002346!1.00e-10!90;UBERON:0005743!7.49e-10!86;UBERON:0001017!8.55e-10!82;UBERON:0000955!2.00e-09!69;UBERON:0006238!2.00e-09!69;UBERON:0002780!2.63e-09!41;UBERON:0001890!2.63e-09!41;UBERON:0006240!2.63e-09!41;UBERON:0003080!2.79e-09!42;UBERON:0000073!4.13e-09!94;UBERON:0001016!4.13e-09!94;UBERON:0003056!6.04e-09!61;UBERON:0003081!1.92e-07!216;UBERON:0004111!4.01e-07!241;UBERON:0002791!4.34e-07!33;UBERON:0001893!4.45e-07!34;UBERON:0002020!5.29e-07!34;UBERON:0003528!5.29e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;8.64e-08;53!UBERON:0002616;8.64e-08;53!UBERON:0002780;3.66e-07;41!UBERON:0001890;3.66e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.51e-13,56;UBERON:0005068,1.51e-13,56;UBERON:0006241,1.51e-13,56;UBERON:0007135,1.51e-13,56;UBERON:0000073,5.61e-13,53;UBERON:0002616,5.61e-13,53;UBERON:0000025,9.47e-13,192;UBERON:0003075,1.62e-11,82;UBERON:0007284,1.62e-11,82;UBERON:0002346,5.63e-11,86;UBERON:0001017,9.01e-10,81;UBERON:0000955,2.07e-09,68;UBERON:0006238,2.07e-09,68;UBERON:0002780,2.63e-09,41;UBERON:0001890,2.63e-09,41;UBERON:0003080,2.63e-09,41;UBERON:0006240,2.63e-09,41;UBERON:0001016,5.40e-09,89;UBERON:0003056,5.69e-09,61;UBERON:0003081,1.33e-07,203;UBERON:0004111,4.39e-07,240;UBERON:0001893,4.45e-07,34;UBERON:0010371,5.17e-07,104;UBERON:0003528,5.29e-07,34;UBERON:0002020,5.29e-07,34;UBERON:0002791,7.21e-07,32 | |||
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|short_description=p1@ATG4B | |||
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Revision as of 17:52, 12 September 2013
Short description: | p1@ATG4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ATG4B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000396411, ENST00000419606, ENST00000465399, ENST00000468018, ENST00000474739, ENST00000475195, ENST00000479554, ENST00000482507_5end |
EntrezGene: | ATG4B |
HGNC: | 20790 |
UniProt: | F8WD71C9J1C1F5H7P2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.61e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.61e-14 | 42 |
defensive cell | 1.68e-12 | 48 |
phagocyte | 1.68e-12 | 48 |
myeloid leukocyte | 7.59e-10 | 72 |
macrophage dendritic cell progenitor | 4.24e-08 | 61 |
monopoietic cell | 1.29e-07 | 59 |
monocyte | 1.29e-07 | 59 |
monoblast | 1.29e-07 | 59 |
promonocyte | 1.29e-07 | 59 |
granulocyte monocyte progenitor cell | 1.60e-07 | 67 |
myeloid lineage restricted progenitor cell | 2.52e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.51e-13 | 56 |
neural rod | 1.51e-13 | 56 |
future spinal cord | 1.51e-13 | 56 |
neural keel | 1.51e-13 | 56 |
regional part of nervous system | 5.61e-13 | 53 |
regional part of brain | 5.61e-13 | 53 |
tube | 9.47e-13 | 192 |
neural plate | 1.62e-11 | 82 |
presumptive neural plate | 1.62e-11 | 82 |
neurectoderm | 5.63e-11 | 86 |
central nervous system | 9.01e-10 | 81 |
brain | 2.07e-09 | 68 |
future brain | 2.07e-09 | 68 |
regional part of forebrain | 2.63e-09 | 41 |
forebrain | 2.63e-09 | 41 |
anterior neural tube | 2.63e-09 | 41 |
future forebrain | 2.63e-09 | 41 |
nervous system | 5.40e-09 | 89 |
pre-chordal neural plate | 5.69e-09 | 61 |
lateral plate mesoderm | 1.33e-07 | 203 |
anatomical conduit | 4.39e-07 | 240 |
telencephalon | 4.45e-07 | 34 |
ecto-epithelium | 5.17e-07 | 104 |
brain grey matter | 5.29e-07 | 34 |
gray matter | 5.29e-07 | 34 |
regional part of telencephalon | 7.21e-07 | 32 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.