FFCP PHASE1:Hg19::chr3:16327821..16327832,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=92106|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=25128|TSSclassifier=S|UniProt=|association_with_transcript=-27bp_to_AL832787_5end|coexpression_cluster_id=C18|description=CAGE_peak_6_at_OXNAD1_5end|id=chr3:16327821..16327832,+|ontology_enrichment_celltype=CL:0000791!7.80e-33!18;CL:0000789!7.80e-33!18;CL:0002420!7.80e-33!18;CL:0002419!7.80e-33!18;CL:0000790!7.80e-33!18;CL:0000084!7.64e-30!25;CL:0000827!7.64e-30!25;CL:0000625!4.34e-21!11;CL:0000838!8.05e-18!52;CL:0000542!2.48e-17!53;CL:0000051!2.48e-17!53;CL:0000738!1.96e-14!140;CL:0000624!3.16e-12!6;CL:0002087!1.63e-11!119;CL:0000037!1.68e-09!172;CL:0000566!1.68e-09!172;CL:0002031!6.25e-09!124;CL:0000988!2.34e-08!182;CL:0002032!1.02e-07!165;CL:0000837!1.02e-07!165;CL:0000898!5.45e-07!3|ontology_enrichment_celltype_v019=CL:0000791;6.82e-51;18!CL:0000789;6.82e-51;18!CL:0002419;6.82e-51;18!CL:0000084;7.95e-44;25!CL:0000625;1.42e-35;11!CL:0000624;4.04e-20;6!CL:0000542;2.00e-13;53!CL:0000898;5.28e-11;3!CL:0000226;1.69e-10;3!CL:0000842;1.69e-10;3!CL:0000623;5.08e-10;3!CL:0000815;8.22e-08;2!CL:0000792;8.22e-08;2!CL:0002677;8.22e-08;2|ontology_enrichment_celltype_v019_2=CL:0000791,6.96e-51,18;CL:0000789,6.96e-51,18;CL:0002420,6.96e-51,18;CL:0002419,6.96e-51,18;CL:0000790,6.96e-51,18;CL:0000084,8.91e-44,25;CL:0000827,8.91e-44,25;CL:0000625,1.41e-35,11;CL:0000838,3.30e-25,52;CL:0000542,1.28e-24,53;CL:0000051,1.28e-24,53;CL:0000624,4.18e-20,6;CL:0000738,7.92e-16,136;CL:0002087,8.89e-15,115;CL:0000037,2.46e-11,168;CL:0000898,5.20e-11,3;CL:0000226,1.69e-10,3;CL:0000842,1.69e-10,3;CL:0002031,2.05e-10,120;CL:0000988,2.25e-10,177;CL:0000623,3.89e-10,3;CL:0000825,3.89e-10,3;CL:0002032,2.70e-09,161;CL:0000837,2.70e-09,161;CL:0000815,8.09e-08,2;CL:0000792,8.09e-08,2;CL:0002677,8.09e-08,2|ontology_enrichment_development_v019=CL:0000790;6.82e-51;18!CL:0000051;2.00e-13;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.41e-16!115;UBERON:0000178!3.81e-16!15;UBERON:0000179!3.81e-16!15;UBERON:0000463!3.81e-16!15;UBERON:0004177!7.82e-09!7;UBERON:0002370!1.21e-07!4;UBERON:0005058!1.21e-07!4;UBERON:0009113!1.21e-07!4;UBERON:0003295!1.21e-07!4;UBERON:0005562!1.21e-07!4|ontology_enrichment_uberon_v019=UBERON:0000178;1.10e-23;15!UBERON:0000179;1.10e-23;15!UBERON:0000463;1.10e-23;15!UBERON:0002390;1.48e-14;32!UBERON:0002193;1.01e-10;42!UBERON:0002370;8.61e-07;2!UBERON:0005058;8.61e-07;2!UBERON:0009113;8.61e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.10e-23,15;UBERON:0000179,1.10e-23,15;UBERON:0000463,1.10e-23,15;UBERON:0002370,1.03e-07,4;UBERON:0005058,1.03e-07,4;UBERON:0009113,1.03e-07,4;UBERON:0003295,1.03e-07,4;UBERON:0005562,1.03e-07,4;UBERON:0004177,2.75e-07,7;UBERON:0005057,2.75e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,0.767658796194425,1.54816123316076,0,0,0,0,0,0,1.66198622559563,1.20326668482085,1.73608696572681,0,0.971680998056939,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24203425192614,0,19.8676867814971,7.07419372948497,7.19605246498282,1.5046784585161,22.4886363977177,17.5175688121851,19.4826728407911,0.334231370655521,5.59751224202191,5.98141515375777,6.49929273036037,0.896639238079726,0.780356085359269,6.41307827954337,9.94860064029054,8.11448640058147,38.8510795484598,29.6970319179582,32.4060123795428,2.37949619664889,16.4784812248826,11.3397057009268,14.6751421371312,15.9282707162048,11.0684187155591,13.3063286222772,21.8333922662771,24.5734293416483,18.7396089828519,13.969857870597,8.21127996921047,5.44338206706778,3.7441627409691,8.97911304073354,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0.348259474598534,0,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,7.48716888767323,1.94064817373566,4.74869234235069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.09779314940704,7.98142543028882,3.41528184971022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05958087385735,4.58782324285425,5.12682468456746,8.33811214102261,6.9931586424653,0.648473311192717,2.70015718619057,1.58625035258854,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6480387422676,0,0.19924798825107,1.93398740871803,0,0,0.123084805461069,0,0,0,0,0.197286811273867,9.57932369387759,0,0.969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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=92106 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=25128 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-27bp_to_AL832787_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_6_at_OXNAD1_5end | |||
|id=chr3:16327821..16327832,+ | |||
|ontology_enrichment_celltype=CL:0000791!7.80e-33!18;CL:0000789!7.80e-33!18;CL:0002420!7.80e-33!18;CL:0002419!7.80e-33!18;CL:0000790!7.80e-33!18;CL:0000084!7.64e-30!25;CL:0000827!7.64e-30!25;CL:0000625!4.34e-21!11;CL:0000838!8.05e-18!52;CL:0000542!2.48e-17!53;CL:0000051!2.48e-17!53;CL:0000738!1.96e-14!140;CL:0000624!3.16e-12!6;CL:0002087!1.63e-11!119;CL:0000037!1.68e-09!172;CL:0000566!1.68e-09!172;CL:0002031!6.25e-09!124;CL:0000988!2.34e-08!182;CL:0002032!1.02e-07!165;CL:0000837!1.02e-07!165;CL:0000898!5.45e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.82e-51;18!CL:0000789;6.82e-51;18!CL:0002419;6.82e-51;18!CL:0000084;7.95e-44;25!CL:0000625;1.42e-35;11!CL:0000624;4.04e-20;6!CL:0000542;2.00e-13;53!CL:0000898;5.28e-11;3!CL:0000226;1.69e-10;3!CL:0000842;1.69e-10;3!CL:0000623;5.08e-10;3!CL:0000815;8.22e-08;2!CL:0000792;8.22e-08;2!CL:0002677;8.22e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.96e-51,18;CL:0000789,6.96e-51,18;CL:0002420,6.96e-51,18;CL:0002419,6.96e-51,18;CL:0000790,6.96e-51,18;CL:0000084,8.91e-44,25;CL:0000827,8.91e-44,25;CL:0000625,1.41e-35,11;CL:0000838,3.30e-25,52;CL:0000542,1.28e-24,53;CL:0000051,1.28e-24,53;CL:0000624,4.18e-20,6;CL:0000738,7.92e-16,136;CL:0002087,8.89e-15,115;CL:0000037,2.46e-11,168;CL:0000898,5.20e-11,3;CL:0000226,1.69e-10,3;CL:0000842,1.69e-10,3;CL:0002031,2.05e-10,120;CL:0000988,2.25e-10,177;CL:0000623,3.89e-10,3;CL:0000825,3.89e-10,3;CL:0002032,2.70e-09,161;CL:0000837,2.70e-09,161;CL:0000815,8.09e-08,2;CL:0000792,8.09e-08,2;CL:0002677,8.09e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;6.82e-51;18!CL:0000051;2.00e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.41e-16!115;UBERON:0000178!3.81e-16!15;UBERON:0000179!3.81e-16!15;UBERON:0000463!3.81e-16!15;UBERON:0004177!7.82e-09!7;UBERON:0002370!1.21e-07!4;UBERON:0005058!1.21e-07!4;UBERON:0009113!1.21e-07!4;UBERON:0003295!1.21e-07!4;UBERON:0005562!1.21e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.10e-23;15!UBERON:0000179;1.10e-23;15!UBERON:0000463;1.10e-23;15!UBERON:0002390;1.48e-14;32!UBERON:0002193;1.01e-10;42!UBERON:0002370;8.61e-07;2!UBERON:0005058;8.61e-07;2!UBERON:0009113;8.61e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.10e-23,15;UBERON:0000179,1.10e-23,15;UBERON:0000463,1.10e-23,15;UBERON:0002370,1.03e-07,4;UBERON:0005058,1.03e-07,4;UBERON:0009113,1.03e-07,4;UBERON:0003295,1.03e-07,4;UBERON:0005562,1.03e-07,4;UBERON:0004177,2.75e-07,7;UBERON:0005057,2.75e-07,7 | |||
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|short_description=p6@OXNAD1 | |||
}} |
Revision as of 22:32, 12 September 2013
Short description: | p6@OXNAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_OXNAD1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -27bp_to_AL832787_5end |
EntrezGene: | OXNAD1 |
HGNC: | 25128 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 6.96e-51 | 18 |
alpha-beta T cell | 6.96e-51 | 18 |
immature T cell | 6.96e-51 | 18 |
mature T cell | 6.96e-51 | 18 |
immature alpha-beta T cell | 6.96e-51 | 18 |
T cell | 8.91e-44 | 25 |
pro-T cell | 8.91e-44 | 25 |
CD8-positive, alpha-beta T cell | 1.41e-35 | 11 |
lymphoid lineage restricted progenitor cell | 3.30e-25 | 52 |
lymphocyte | 1.28e-24 | 53 |
common lymphoid progenitor | 1.28e-24 | 53 |
CD4-positive, alpha-beta T cell | 4.18e-20 | 6 |
leukocyte | 7.92e-16 | 136 |
nongranular leukocyte | 8.89e-15 | 115 |
hematopoietic stem cell | 2.46e-11 | 168 |
naive T cell | 5.20e-11 | 3 |
single nucleate cell | 1.69e-10 | 3 |
mononuclear cell | 1.69e-10 | 3 |
hematopoietic lineage restricted progenitor cell | 2.05e-10 | 120 |
hematopoietic cell | 2.25e-10 | 177 |
natural killer cell | 3.89e-10 | 3 |
pro-NK cell | 3.89e-10 | 3 |
hematopoietic oligopotent progenitor cell | 2.70e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.70e-09 | 161 |
regulatory T cell | 8.09e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.09e-08 | 2 |
naive regulatory T cell | 8.09e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.10e-23 | 15 |
haemolymphatic fluid | 1.10e-23 | 15 |
organism substance | 1.10e-23 | 15 |
thymus | 1.03e-07 | 4 |
hemolymphoid system gland | 1.03e-07 | 4 |
thymic region | 1.03e-07 | 4 |
pharyngeal gland | 1.03e-07 | 4 |
thymus primordium | 1.03e-07 | 4 |
hemopoietic organ | 2.75e-07 | 7 |
immune organ | 2.75e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.