FFCP PHASE1:Mm9::chr13:70776647..70776703,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=218333|HGNC=|MCL_coexpression_id=1260|UniProt=E9Q286,Q6ZQ20|association_with_transcript=-135bp_to_ENSMUST00000043493,NM_144837,uc007rcv.2,uc007rcx.2_5end|description=CAGE_peak_1_at_BC018507_5end|id=chr13:70776647..70776703,-|ontology_enrichment_celltype=CL:0000117!1.01e-09!23;CL:0000337!1.01e-09!23;CL:0000540!2.09e-09!33;CL:0000047!2.09e-09!33;CL:0000031!2.09e-09!33;CL:0000404!2.09e-09!33;CL:0000393!4.21e-07!39;CL:0000211!4.21e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.01e-09,23;CL:0000337,1.01e-09,23;CL:0000540,2.09e-09,33;CL:0000047,2.09e-09,33;CL:0000031,2.09e-09,33;CL:0000404,2.09e-09,33;CL:0000393,4.21e-07,39;CL:0000211,4.21e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!5.55e-15!94;UBERON:0001017!1.04e-13!73;UBERON:0005743!1.04e-13!73;UBERON:0002020!1.40e-13!34;UBERON:0001049!1.42e-13!52;UBERON:0005068!1.42e-13!52;UBERON:0006241!1.42e-13!52;UBERON:0007135!1.42e-13!52;UBERON:0000955!1.95e-13!50;UBERON:0006238!1.95e-13!50;UBERON:0000033!3.23e-13!63;UBERON:0003056!4.68e-13!49;UBERON:0007811!6.26e-13!86;UBERON:0002616!8.28e-13!49;UBERON:0000073!1.17e-12!75;UBERON:0001016!1.17e-12!75;UBERON:0002791!2.16e-12!29;UBERON:0003528!2.16e-12!29;UBERON:0001893!2.16e-12!29;UBERON:0003080!3.01e-12!40;UBERON:0002780!8.23e-12!39;UBERON:0001890!8.23e-12!39;UBERON:0006240!8.23e-12!39;UBERON:0002346!1.89e-11!71;UBERON:0003075!1.89e-11!71;UBERON:0007284!1.89e-11!71;UBERON:0004121!7.27e-10!102;UBERON:0000924!7.27e-10!102;UBERON:0006601!7.27e-10!102;UBERON:0000956!3.40e-09!21;UBERON:0001869!3.40e-09!21;UBERON:0000203!3.40e-09!21;UBERON:0002021!1.12e-07!10;UBERON:0000411!1.12e-07!10;UBERON:0001950!1.12e-07!10;UBERON:0002619!2.29e-07!17;UBERON:0000025!2.69e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.81e-14,64;UBERON:0003075,1.81e-14,64;UBERON:0007284,1.81e-14,64;UBERON:0000073,3.71e-14,54;UBERON:0001017,1.04e-13,73;UBERON:0002020,1.40e-13,34;UBERON:0001049,1.42e-13,52;UBERON:0005068,1.42e-13,52;UBERON:0006241,1.42e-13,52;UBERON:0007135,1.42e-13,52;UBERON:0003056,4.68e-13,49;UBERON:0010371,9.62e-13,73;UBERON:0001016,1.17e-12,75;UBERON:0010314,1.28e-12,92;UBERON:0000955,1.44e-12,47;UBERON:0006238,1.44e-12,47;UBERON:0003528,2.16e-12,29;UBERON:0002791,2.16e-12,29;UBERON:0001893,2.16e-12,29;UBERON:0003080,3.01e-12,40;UBERON:0004121,5.84e-12,95;UBERON:0000924,5.84e-12,95;UBERON:0006601,5.84e-12,95;UBERON:0002616,5.99e-12,46;UBERON:0002780,8.23e-12,39;UBERON:0001890,8.23e-12,39;UBERON:0006240,8.23e-12,39;UBERON:0000956,3.40e-09,21;UBERON:0001869,3.40e-09,21;UBERON:0000203,3.40e-09,21;UBERON:0002021,1.12e-07,10;UBERON:0000411,1.12e-07,10;UBERON:0001950,1.12e-07,10;UBERON:0002619,2.29e-07,17;UBERON:0000025,2.69e-07,114|phase1_expression=34.4320021275307,8.72438519098403,9.09998478779072,13.0059610861937,14.5259761684441,19.809754085603,16.8201101228778,46.3552731155259,38.435321147405,49.8557441065846,40.7498764376702,44.5128647193977,55.2978357677794,46.8573356965826,20.6528052325711,16.1980213911861,14.6907994406911,41.16781257925,42.3683599841733,43.7121341351971,29.6801082627234,24.9220287514222,24.5527801790599,10.8794847499517,6.8822784320151,8.03924749761028,6.03066794622705,8.83432054012145,9.88121781173144,17.6421090831952,11.0865255327652,14.6057054895715,17.8368788399525,0,18.4865036640816,18.4520456347927,22.4586291888606,23.4377713212668,14.8453715459522,18.3233310390829,26.4704169613956,20.4913645487534,22.3334762394331,27.3196095007003,26.4593790482933,29.1839335937074,16.4302182313088,9.3750817243592,8.34807494390993,11.8602238435313,13.0187372111587,7.18762821824858,31.8786951509699,46.423177088726,53.4389140636518,22.3815709351274,27.7937436740594,23.7209162447623,55.6370267363894,71.4137822017244,65.9184659646426,13.2149367506962,9.78224275722253,8.09909745553259,3.9554654502679,8.5257613793532,7.49000276296012,12.6792040756113,49.8747035203778,44.4169537111262,49.005715994872,33.421165175245,31.5842013560807,52.5485528632153,53.4817728281759,55.1531271966013,44.0463523997555,39.455387468323,43.4706489115169,63.8329632614138,66.8774674733614,65.6350846901518,24.8472869111229,48.9603470727562,46.4506673241503,63.3451458768386,61.0774510628152,62.630213797301,20.4460721999597,22.2180386713949,50.1465565453903,13.7667820317022,28.5587960157255,14.0322829825832,15.5946340187441,16.1289679355041,17.4151080963372,22.1559419351475,17.1458763037893,20.1403557470894,26.6194063377926,20.5322363862909,28.028576367731,14.2213340630666,19.0512116089868,18.4952701796822,21.2320266906209,18.6119723942068,42.206875034489,25.9773743363443,25.6758283613881,22.2259799167863,21.4472412448134,20.347556474604,31.5137735123689,22.3686532566822,31.1465659345311,25.1602881040646,15.0383793831479,39.6328782371152,24.0717255121829,26.6681389224372,20.5030937339934,64.4117753425404,56.5506108396329,16.860165643767,25.1611761462433,19.7967901227825,27.447169047782,47.0342607731143,53.0700699269607,75.2669569156058,62.5767552692195,69.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| ||
|EntrezGene=218333 | |||
|HGNC= | |||
|MCL_coexpression_id=1260 | |||
|UniProt=E9Q286,Q6ZQ20 | |||
|association_with_transcript=-135bp_to_ENSMUST00000043493,NM_144837,uc007rcv.2,uc007rcx.2_5end | |||
|description=CAGE_peak_1_at_BC018507_5end | |||
|id=chr13:70776647..70776703,- | |||
|ontology_enrichment_celltype=CL:0000117!1.01e-09!23;CL:0000337!1.01e-09!23;CL:0000540!2.09e-09!33;CL:0000047!2.09e-09!33;CL:0000031!2.09e-09!33;CL:0000404!2.09e-09!33;CL:0000393!4.21e-07!39;CL:0000211!4.21e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.01e-09,23;CL:0000337,1.01e-09,23;CL:0000540,2.09e-09,33;CL:0000047,2.09e-09,33;CL:0000031,2.09e-09,33;CL:0000404,2.09e-09,33;CL:0000393,4.21e-07,39;CL:0000211,4.21e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!5.55e-15!94;UBERON:0001017!1.04e-13!73;UBERON:0005743!1.04e-13!73;UBERON:0002020!1.40e-13!34;UBERON:0001049!1.42e-13!52;UBERON:0005068!1.42e-13!52;UBERON:0006241!1.42e-13!52;UBERON:0007135!1.42e-13!52;UBERON:0000955!1.95e-13!50;UBERON:0006238!1.95e-13!50;UBERON:0000033!3.23e-13!63;UBERON:0003056!4.68e-13!49;UBERON:0007811!6.26e-13!86;UBERON:0002616!8.28e-13!49;UBERON:0000073!1.17e-12!75;UBERON:0001016!1.17e-12!75;UBERON:0002791!2.16e-12!29;UBERON:0003528!2.16e-12!29;UBERON:0001893!2.16e-12!29;UBERON:0003080!3.01e-12!40;UBERON:0002780!8.23e-12!39;UBERON:0001890!8.23e-12!39;UBERON:0006240!8.23e-12!39;UBERON:0002346!1.89e-11!71;UBERON:0003075!1.89e-11!71;UBERON:0007284!1.89e-11!71;UBERON:0004121!7.27e-10!102;UBERON:0000924!7.27e-10!102;UBERON:0006601!7.27e-10!102;UBERON:0000956!3.40e-09!21;UBERON:0001869!3.40e-09!21;UBERON:0000203!3.40e-09!21;UBERON:0002021!1.12e-07!10;UBERON:0000411!1.12e-07!10;UBERON:0001950!1.12e-07!10;UBERON:0002619!2.29e-07!17;UBERON:0000025!2.69e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.81e-14,64;UBERON:0003075,1.81e-14,64;UBERON:0007284,1.81e-14,64;UBERON:0000073,3.71e-14,54;UBERON:0001017,1.04e-13,73;UBERON:0002020,1.40e-13,34;UBERON:0001049,1.42e-13,52;UBERON:0005068,1.42e-13,52;UBERON:0006241,1.42e-13,52;UBERON:0007135,1.42e-13,52;UBERON:0003056,4.68e-13,49;UBERON:0010371,9.62e-13,73;UBERON:0001016,1.17e-12,75;UBERON:0010314,1.28e-12,92;UBERON:0000955,1.44e-12,47;UBERON:0006238,1.44e-12,47;UBERON:0003528,2.16e-12,29;UBERON:0002791,2.16e-12,29;UBERON:0001893,2.16e-12,29;UBERON:0003080,3.01e-12,40;UBERON:0004121,5.84e-12,95;UBERON:0000924,5.84e-12,95;UBERON:0006601,5.84e-12,95;UBERON:0002616,5.99e-12,46;UBERON:0002780,8.23e-12,39;UBERON:0001890,8.23e-12,39;UBERON:0006240,8.23e-12,39;UBERON:0000956,3.40e-09,21;UBERON:0001869,3.40e-09,21;UBERON:0000203,3.40e-09,21;UBERON:0002021,1.12e-07,10;UBERON:0000411,1.12e-07,10;UBERON:0001950,1.12e-07,10;UBERON:0002619,2.29e-07,17;UBERON:0000025,2.69e-07,114 | |||
|phase1_expression=34.4320021275307,8.72438519098403,9.09998478779072,13.0059610861937,14.5259761684441,19.809754085603,16.8201101228778,46.3552731155259,38.435321147405,49.8557441065846,40.7498764376702,44.5128647193977,55.2978357677794,46.8573356965826,20.6528052325711,16.1980213911861,14.6907994406911,41.16781257925,42.3683599841733,43.7121341351971,29.6801082627234,24.9220287514222,24.5527801790599,10.8794847499517,6.8822784320151,8.03924749761028,6.03066794622705,8.83432054012145,9.88121781173144,17.6421090831952,11.0865255327652,14.6057054895715,17.8368788399525,0,18.4865036640816,18.4520456347927,22.4586291888606,23.4377713212668,14.8453715459522,18.3233310390829,26.4704169613956,20.4913645487534,22.3334762394331,27.3196095007003,26.4593790482933,29.1839335937074,16.4302182313088,9.3750817243592,8.34807494390993,11.8602238435313,13.0187372111587,7.18762821824858,31.8786951509699,46.423177088726,53.4389140636518,22.3815709351274,27.7937436740594,23.7209162447623,55.6370267363894,71.4137822017244,65.9184659646426,13.2149367506962,9.78224275722253,8.09909745553259,3.9554654502679,8.5257613793532,7.49000276296012,12.6792040756113,49.8747035203778,44.4169537111262,49.005715994872,33.421165175245,31.5842013560807,52.5485528632153,53.4817728281759,55.1531271966013,44.0463523997555,39.455387468323,43.4706489115169,63.8329632614138,66.8774674733614,65.6350846901518,24.8472869111229,48.9603470727562,46.4506673241503,63.3451458768386,61.0774510628152,62.630213797301,20.4460721999597,22.2180386713949,50.1465565453903,13.7667820317022,28.5587960157255,14.0322829825832,15.5946340187441,16.1289679355041,17.4151080963372,22.1559419351475,17.1458763037893,20.1403557470894,26.6194063377926,20.5322363862909,28.028576367731,14.2213340630666,19.0512116089868,18.4952701796822,21.2320266906209,18.6119723942068,42.206875034489,25.9773743363443,25.6758283613881,22.2259799167863,21.4472412448134,20.347556474604,31.5137735123689,22.3686532566822,31.1465659345311,25.1602881040646,15.0383793831479,39.6328782371152,24.0717255121829,26.6681389224372,20.5030937339934,64.4117753425404,56.5506108396329,16.860165643767,25.1611761462433,19.7967901227825,27.447169047782,47.0342607731143,53.0700699269607,75.2669569156058,62.5767552692195,69.0431734791892,44.0510654466267,52.5661692339535,47.5589829180977,26.2498707987296,31.843067562643,30.0931853917658,36.433724029557,33.3358051428536,33.3114940139896,40.6903008156431,44.4278339458171,41.3807316520065,40.1980398361237,42.1686494304596,32.5507669328592,47.087413961787,42.2282697993477,35.9481001181223,47.2680323683516,45.969285980926,38.2754773718775,37.8165106955137,22.4708219940235,18.2717014051448,17.3339734631312,31.6902431979318,29.315757497637,35.2921640463589,34.0912419242703,38.1722609589963,35.7899701898718,35.5776935468124,41.0458304141417,41.334931197978,38.013325330014,42.5193731964857,51.3165564425267,52.339595498269,47.861925133449,43.8854989346416,52.3621971924677,57.4207737076407,8.59088835757875,16.6603856998033,44.7905326123991,40.8736542474372,31.3147931012687,24.2020229548011,20.6811580775729,20.1639163679313,21.353807769503,16.4698954724011,23.6255096272253,22.6810378126912,22.8107981929371,22.4704852163555,16.8587678902262,21.1089749649629,22.9498160153229,40.9009675142829,27.0498565615393,38.6937522906097,38.5965449463575,43.4842083319975,33.3888916016078,27.1602672282468,25.2767951824613,22.0880923420023,14.5261787272703,22.6909343773888,21.4249304673391,18.2138311031732,19.6774317746848,20.7412357387078,19.0969388836065,22.4402987211632,22.2125260681798,16.1991233780968,27.3159592401974,26.0498663367952,24.9630138491648,18.9434158460334,22.6040741037609,21.2275149399882,33.9945869906553,32.0240485892119,36.6671196994558,33.9490171550376,32.8566347603903,34.506289033014,38.5630698235342,44.8807390072937,45.8718269349016,38.0919266195893,38.4285992464544,37.524699069904,35.0550513187768,39.3445439341711,34.6819953060326,15.7732648307426,25.5717421969899,27.0418011378638,39.1743439570212,42.0789954866009,29.3443552224249,39.6379355710866,40.3850520852809,30.0637833108412,33.6060500463166,33.9335693092624,35.2021905050183,39.9137908412254,37.2425845540903,37.1164939547366,38.7382022387593,75.5105093591247,33.7817402795679,35.2569895261165,51.1465052370229,40.4176801282712,27.8764790513922,31.3187020639926,24.1858845571801,24.8958705277786,17.4228116799656,29.821209350561,33.3372498187005,33.4451031119305,32.7977588113944,29.0753817300951,31.6255825724996,24.7525303795648,30.6395645178409,38.5330741227004,26.6478888592474,36.0086218853075,28.1970971491215,35.495394702812,39.1626669033048,32.8822145043767,22.0591405579888,27.3263371414328,25.3607657763206,30.8337293000568,38.4285335536255,33.8958638096236,26.0231709926837,30.3660664528363,21.569581910609,41.5352676503542,25.6306321196779,33.8474463459685,28.890346269675,16.5764242164128,23.6481013957374,23.3353736670653,36.8853193086666,32.328785486765,33.3061936868661,16.2294005062569,33.8479513131815,33.3443926088032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| |||
|short_description=p1@BC018507 | |||
}} |
Revision as of 01:04, 13 September 2013
Short description: | p1@BC018507 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BC018507_5end |
Coexpression cluster: | MCL_coexpression_mm9:1260 |
Association with transcript: | -135bp_to_ENSMUST00000043493, NM_144837, uc007rcv.2, uc007rcx.2_5end |
EntrezGene: | BC018507 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.01e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.01e-09 | 23 |
neuron | 2.09e-09 | 33 |
neuronal stem cell | 2.09e-09 | 33 |
neuroblast | 2.09e-09 | 33 |
electrically signaling cell | 2.09e-09 | 33 |
electrically responsive cell | 4.21e-07 | 39 |
electrically active cell | 4.21e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.81e-14 | 64 |
neural plate | 1.81e-14 | 64 |
presumptive neural plate | 1.81e-14 | 64 |
regional part of nervous system | 3.71e-14 | 54 |
central nervous system | 1.04e-13 | 73 |
gray matter | 1.40e-13 | 34 |
neural tube | 1.42e-13 | 52 |
neural rod | 1.42e-13 | 52 |
future spinal cord | 1.42e-13 | 52 |
neural keel | 1.42e-13 | 52 |
pre-chordal neural plate | 4.68e-13 | 49 |
ecto-epithelium | 9.62e-13 | 73 |
nervous system | 1.17e-12 | 75 |
structure with developmental contribution from neural crest | 1.28e-12 | 92 |
brain | 1.44e-12 | 47 |
future brain | 1.44e-12 | 47 |
brain grey matter | 2.16e-12 | 29 |
regional part of telencephalon | 2.16e-12 | 29 |
telencephalon | 2.16e-12 | 29 |
anterior neural tube | 3.01e-12 | 40 |
ectoderm-derived structure | 5.84e-12 | 95 |
ectoderm | 5.84e-12 | 95 |
presumptive ectoderm | 5.84e-12 | 95 |
regional part of brain | 5.99e-12 | 46 |
regional part of forebrain | 8.23e-12 | 39 |
forebrain | 8.23e-12 | 39 |
future forebrain | 8.23e-12 | 39 |
cerebral cortex | 3.40e-09 | 21 |
cerebral hemisphere | 3.40e-09 | 21 |
pallium | 3.40e-09 | 21 |
occipital lobe | 1.12e-07 | 10 |
visual cortex | 1.12e-07 | 10 |
neocortex | 1.12e-07 | 10 |
regional part of cerebral cortex | 2.29e-07 | 17 |
tube | 2.69e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.