FFCP PHASE1:Mm9::chr14:28173903..28173930,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=20|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr14:28173903..28173930,+|id=chr14:28173903..28173930,+|ontology_enrichment_celltype=CL:0000117!1.63e-11!23;CL:0000337!1.63e-11!23;CL:0002610!4.06e-08!3;CL:0002614!1.54e-07!3;CL:0000540!3.23e-07!33;CL:0000047!3.23e-07!33;CL:0000031!3.23e-07!33;CL:0000404!3.23e-07!33;CL:0002612!4.56e-07!3|ontology_enrichment_celltype_v019_2=CL:0002610,1.36e-24,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002298!4.17e-14!6;UBERON:0002240!6.78e-13!6;UBERON:0005174!6.78e-13!6;UBERON:0001137!6.78e-13!6;UBERON:0001049!1.02e-12!52;UBERON:0005068!1.02e-12!52;UBERON:0006241!1.02e-12!52;UBERON:0007135!1.02e-12!52;UBERON:0001017!1.71e-12!73;UBERON:0005743!1.71e-12!73;UBERON:0000073!5.33e-12!75;UBERON:0001016!5.33e-12!75;UBERON:0003076!4.45e-11!12;UBERON:0003057!4.45e-11!12;UBERON:0000955!7.19e-11!50;UBERON:0006238!7.19e-11!50;UBERON:0001948!1.07e-10!5;UBERON:0002315!1.07e-10!5;UBERON:0002616!1.03e-09!49;UBERON:0002950!1.28e-09!4;UBERON:0001891!1.28e-09!4;UBERON:0009616!1.28e-09!4;UBERON:0002020!1.52e-09!34;UBERON:0004684!4.06e-08!3;UBERON:0002275!4.06e-08!3;UBERON:0004121!4.47e-08!102;UBERON:0000924!4.47e-08!102;UBERON:0006601!4.47e-08!102;UBERON:0002346!5.23e-08!71;UBERON:0003075!5.23e-08!71;UBERON:0007284!5.23e-08!71;UBERON:0000033!1.02e-07!63;UBERON:0002038!1.54e-07!3;UBERON:0002308!1.54e-07!3;UBERON:0009663!1.54e-07!3;UBERON:0009661!1.54e-07!3;UBERON:0006331!1.54e-07!3;UBERON:0000125!1.54e-07!3;UBERON:0002257!4.56e-07!3;UBERON:0002420!9.01e-07!8;UBERON:0007245!9.01e-07!8;UBERON:0010009!9.01e-07!8;UBERON:0010011!9.01e-07!8;UBERON:0000454!9.01e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.36e-24,3;UBERON:0002275,1.36e-24,3;UBERON:0001896,1.55e-17,2;UBERON:0002298,1.55e-17,2;UBERON:0005290,1.55e-17,2;UBERON:0010096,1.55e-17,2;UBERON:0001017,1.39e-12,73;UBERON:0001016,3.15e-12,75;UBERON:0000073,2.27e-11,54;UBERON:0004121,1.73e-09,95;UBERON:0000924,1.73e-09,95;UBERON:0006601,1.73e-09,95;UBERON:0002259,5.27e-09,1;UBERON:0002314,5.27e-09,1;UBERON:0004061,5.27e-09,1;UBERON:0006777,5.27e-09,1;UBERON:0005882,5.27e-09,1;UBERON:0002950,1.00e-08,4;UBERON:0001891,1.00e-08,4;UBERON:0009616,1.00e-08,4;UBERON:0010286,1.00e-08,4;UBERON:0000955,5.71e-08,47;UBERON:0006238,5.71e-08,47;UBERON:0001049,3.60e-07,52;UBERON:0005068,3.60e-07,52;UBERON:0006241,3.60e-07,52;UBERON:0007135,3.60e-07,52;UBERON:0003076,8.89e-07,12;UBERON:0003057,8.89e-07,12|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0.220868540951614,0,0,0,4.40463523997555,2.17068474744819,1.0752457327937,0,0.0914876436024097,0,0.279182999001381,1.68828783009504,0.61119299110724,0.589257170947335,0.284743361598206,0.186399445825301,0,0,0,0,0,0.539703191637817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,1.3481157546434,1.83000241127451,0,0.347648640384553,0,1.66230435647648,0.486723789203273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.33486592967038,3.6335622843583,0,0,0,0,0,0,0,0,0,0,0,2.24924921495265,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0,0,0,0,2.41052892613663,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0,0.675022500231806,0.900642406448441,0,0,0,0,0,0.486213434136588,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.229741875822453,0,0.115884325944855,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0.231867835620421|short_description=p@chr14:28173903..28173930,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr14:28173903..28173930,+ | |||
|id=chr14:28173903..28173930,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.63e-11!23;CL:0000337!1.63e-11!23;CL:0002610!4.06e-08!3;CL:0002614!1.54e-07!3;CL:0000540!3.23e-07!33;CL:0000047!3.23e-07!33;CL:0000031!3.23e-07!33;CL:0000404!3.23e-07!33;CL:0002612!4.56e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.36e-24,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!4.17e-14!6;UBERON:0002240!6.78e-13!6;UBERON:0005174!6.78e-13!6;UBERON:0001137!6.78e-13!6;UBERON:0001049!1.02e-12!52;UBERON:0005068!1.02e-12!52;UBERON:0006241!1.02e-12!52;UBERON:0007135!1.02e-12!52;UBERON:0001017!1.71e-12!73;UBERON:0005743!1.71e-12!73;UBERON:0000073!5.33e-12!75;UBERON:0001016!5.33e-12!75;UBERON:0003076!4.45e-11!12;UBERON:0003057!4.45e-11!12;UBERON:0000955!7.19e-11!50;UBERON:0006238!7.19e-11!50;UBERON:0001948!1.07e-10!5;UBERON:0002315!1.07e-10!5;UBERON:0002616!1.03e-09!49;UBERON:0002950!1.28e-09!4;UBERON:0001891!1.28e-09!4;UBERON:0009616!1.28e-09!4;UBERON:0002020!1.52e-09!34;UBERON:0004684!4.06e-08!3;UBERON:0002275!4.06e-08!3;UBERON:0004121!4.47e-08!102;UBERON:0000924!4.47e-08!102;UBERON:0006601!4.47e-08!102;UBERON:0002346!5.23e-08!71;UBERON:0003075!5.23e-08!71;UBERON:0007284!5.23e-08!71;UBERON:0000033!1.02e-07!63;UBERON:0002038!1.54e-07!3;UBERON:0002308!1.54e-07!3;UBERON:0009663!1.54e-07!3;UBERON:0009661!1.54e-07!3;UBERON:0006331!1.54e-07!3;UBERON:0000125!1.54e-07!3;UBERON:0002257!4.56e-07!3;UBERON:0002420!9.01e-07!8;UBERON:0007245!9.01e-07!8;UBERON:0010009!9.01e-07!8;UBERON:0010011!9.01e-07!8;UBERON:0000454!9.01e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.36e-24,3;UBERON:0002275,1.36e-24,3;UBERON:0001896,1.55e-17,2;UBERON:0002298,1.55e-17,2;UBERON:0005290,1.55e-17,2;UBERON:0010096,1.55e-17,2;UBERON:0001017,1.39e-12,73;UBERON:0001016,3.15e-12,75;UBERON:0000073,2.27e-11,54;UBERON:0004121,1.73e-09,95;UBERON:0000924,1.73e-09,95;UBERON:0006601,1.73e-09,95;UBERON:0002259,5.27e-09,1;UBERON:0002314,5.27e-09,1;UBERON:0004061,5.27e-09,1;UBERON:0006777,5.27e-09,1;UBERON:0005882,5.27e-09,1;UBERON:0002950,1.00e-08,4;UBERON:0001891,1.00e-08,4;UBERON:0009616,1.00e-08,4;UBERON:0010286,1.00e-08,4;UBERON:0000955,5.71e-08,47;UBERON:0006238,5.71e-08,47;UBERON:0001049,3.60e-07,52;UBERON:0005068,3.60e-07,52;UBERON:0006241,3.60e-07,52;UBERON:0007135,3.60e-07,52;UBERON:0003076,8.89e-07,12;UBERON:0003057,8.89e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0.220868540951614,0,0,0,4.40463523997555,2.17068474744819,1.0752457327937,0,0.0914876436024097,0,0.279182999001381,1.68828783009504,0.61119299110724,0.589257170947335,0.284743361598206,0.186399445825301,0,0,0,0,0,0.539703191637817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,1.3481157546434,1.83000241127451,0,0.347648640384553,0,1.66230435647648,0.486723789203273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.33486592967038,3.6335622843583,0,0,0,0,0,0,0,0,0,0,0,2.24924921495265,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0,0,0,0,2.41052892613663,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0.108005340821801,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0,0.675022500231806,0.900642406448441,0,0,0,0,0,0.486213434136588,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.229741875822453,0,0.115884325944855,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0.231867835620421 | |||
|short_description=p@chr14:28173903..28173930,+ | |||
}} |
Revision as of 01:53, 13 September 2013
Short description: | p@chr14:28173903..28173930, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr14:28173903..28173930, + |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.36e-24 | 3 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 1.36e-24 | 3 |
reticular formation | 1.36e-24 | 3 |
medulla oblongata | 1.55e-17 | 2 |
brainstem | 1.55e-17 | 2 |
myelencephalon | 1.55e-17 | 2 |
future myelencephalon | 1.55e-17 | 2 |
central nervous system | 1.39e-12 | 73 |
nervous system | 3.15e-12 | 75 |
regional part of nervous system | 2.27e-11 | 54 |
ectoderm-derived structure | 1.73e-09 | 95 |
ectoderm | 1.73e-09 | 95 |
presumptive ectoderm | 1.73e-09 | 95 |
corpora quadrigemina | 5.27e-09 | 1 |
midbrain tectum | 5.27e-09 | 1 |
neural tube mantle layer | 5.27e-09 | 1 |
tectal plate | 5.27e-09 | 1 |
neural tube alar plate | 5.27e-09 | 1 |
regional part of midbrain | 1.00e-08 | 4 |
midbrain | 1.00e-08 | 4 |
presumptive midbrain | 1.00e-08 | 4 |
midbrain neural tube | 1.00e-08 | 4 |
brain | 5.71e-08 | 47 |
future brain | 5.71e-08 | 47 |
neural tube | 3.60e-07 | 52 |
neural rod | 3.60e-07 | 52 |
future spinal cord | 3.60e-07 | 52 |
neural keel | 3.60e-07 | 52 |
posterior neural tube | 8.89e-07 | 12 |
chordal neural plate | 8.89e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.